X2F728 · X2F728_LAGSI

Function

function

Photosystem II (PSII) is a light-driven water:plastoquinone oxidoreductase that uses light energy to abstract electrons from H2O, generating O2 and a proton gradient subsequently used for ATP formation. It consists of a core antenna complex that captures photons, and an electron transfer chain that converts photonic excitation into a charge separation. The D1/D2 (PsbA/PsbD) reaction center heterodimer binds P680, the primary electron donor of PSII as well as several subsequent electron acceptors.

Miscellaneous

2 of the reaction center chlorophylls (ChlD1 and ChlD2) are entirely coordinated by water.
Herbicides such as atrazine, BNT, diuron or ioxynil bind in the Q(B) binding site and block subsequent electron transfer.

Catalytic activity

Features

Showing features for binding site, site.

TypeIDPosition(s)Description
Binding site118Mg (UniProtKB | ChEBI) of chlorophyll a ChlzD1 (UniProtKB | ChEBI); axial binding residue
Binding site126pheophytin a D1 (UniProtKB | ChEBI)
Site161Tyrosine radical intermediate
Binding site170[CaMn4O5] cluster (UniProtKB | ChEBI)
Binding site189[CaMn4O5] cluster (UniProtKB | ChEBI)
Site190Stabilizes free radical intermediate
Binding site198Mg (UniProtKB | ChEBI) of chlorophyll a PD1 (UniProtKB | ChEBI); axial binding residue
Binding site215Fe cation (UniProtKB | ChEBI); ligand shared with heterodimeric partner
Binding site215a quinone B (UniProtKB | ChEBI)
Binding site264-265a quinone B (UniProtKB | ChEBI)
Binding site272Fe cation (UniProtKB | ChEBI); ligand shared with heterodimeric partner
Binding site332[CaMn4O5] cluster (UniProtKB | ChEBI)
Binding site333[CaMn4O5] cluster (UniProtKB | ChEBI)
Binding site342[CaMn4O5] cluster (UniProtKB | ChEBI)
Binding site344[CaMn4O5] cluster (UniProtKB | ChEBI)
Site344-345Cleavage; by CtpA

GO annotations

AspectTerm
Cellular Componentchloroplast thylakoid membrane
Cellular Componentphotosystem II
Molecular Functionchlorophyll binding
Molecular Functionelectron transporter, transferring electrons within the cyclic electron transport pathway of photosynthesis activity
Molecular Functioniron ion binding
Molecular Functionoxidoreductase activity, acting on diphenols and related substances as donors, oxygen as acceptor
Molecular Functionoxygen evolving activity
Biological Processphotosynthetic electron transport in photosystem II
Biological Processresponse to herbicide

Keywords

Enzyme and pathway databases

Names & Taxonomy

Protein names

  • Recommended name
    Photosystem II protein D1
  • EC number
  • Short names
    PSII D1 protein
  • Alternative names
    • Photosystem II Q(B) protein

Gene names

    • Name
      psbA

Encoded on

  • Chloroplast

Organism names

  • Taxonomic identifier
  • Strains
    • 35B_Argentina_1
    • Ls10e_Malaysia
    • Ls4E_Iraq
    • Ls5B_Pakistan_1
    • Ls5D_Zimbabwe_2
  • Taxonomic lineage
    Eukaryota > Viridiplantae > Streptophyta > Embryophyta > Tracheophyta > Spermatophyta > Magnoliopsida > eudicotyledons > Gunneridae > Pentapetalae > rosids > fabids > Cucurbitales > Cucurbitaceae > Benincaseae > Lagenaria

Accessions

  • Primary accession
    X2F728

Subcellular Location

Membrane
; Multi-pass membrane protein
Plastid, chloroplast thylakoid membrane
; Multi-pass membrane protein

Features

Showing features for transmembrane.

TypeIDPosition(s)Description
Transmembrane29-55Helical
Transmembrane76-97Helical
Transmembrane109-129Helical
Transmembrane141-164Helical
Transmembrane199-224Helical
Transmembrane271-295Helical

Keywords

PTM/Processing

Features

Showing features for initiator methionine, modified residue, chain, propeptide.

TypeIDPosition(s)Description
Initiator methionine1Removed
Modified residue2N-acetylthreonine
Modified residue2Phosphothreonine
ChainPRO_50350148712-344Photosystem II protein D1
PropeptidePRO_5035014870345-353

Post-translational modification

C-terminally processed by CtpA; processing is essential to allow assembly of the oxygen-evolving complex and thus photosynthetic growth.
Tyr-161 forms a radical intermediate that is referred to as redox-active TyrZ, YZ or Y-Z.

Keywords

Interaction

Subunit

PSII is composed of 1 copy each of membrane proteins PsbA, PsbB, PsbC, PsbD, PsbE, PsbF, PsbH, PsbI, PsbJ, PsbK, PsbL, PsbM, PsbT, PsbX, PsbY, PsbZ, Psb30/Ycf12, at least 3 peripheral proteins of the oxygen-evolving complex and a large number of cofactors. It forms dimeric complexes.

Family & Domains

Sequence similarities

Belongs to the reaction center PufL/M/PsbA/D family.

Keywords

Family and domain databases

Sequence

  • Sequence status
    Complete
  • Length
    353
  • Mass (Da)
    38,866
  • Last updated
    2014-06-11 v1
  • Checksum
    E34B6CE4BCEDFFA4
MTAILERRESESLWGRFCNWITSTENRLYIGWFGVLMIPTLLTATSVFIIAFIAAPPVDIDGIREPVSGSLLYGNNIISGAIIPTSAAIGLHFYPIWEAASVDEWLYNGGPYELIVLHFLLGVACYMGREWELSFRLGMRPWIAVAYSAPVAAATAVFLIYPIGQGSFSDGMPLGISGTFNFMIVFQAEHNILMHPFHMLGVAGVFGGSLXSAMHGSLVTSSLIRETTENESAXXGYRFGQEEETXXIVAAHGYFGRLIFQYASFNNSRSLHFFLAAWPVVGIWFTALGISTMAFNLNGFNFNQSVVDSQGRVINTWADIINRANLGMEVMHERNAHNFPLDLAAVEVPSING

Sequence databases

Nucleotide SequenceProtein SequenceMolecule TypeStatus
KJ399838
EMBL· GenBank· DDBJ
AHM88697.1
EMBL· GenBank· DDBJ
Genomic DNA
KJ399844
EMBL· GenBank· DDBJ
AHM89046.1
EMBL· GenBank· DDBJ
Genomic DNA
KJ399858
EMBL· GenBank· DDBJ
AHM89874.1
EMBL· GenBank· DDBJ
Genomic DNA
KJ399862
EMBL· GenBank· DDBJ
AHM90110.1
EMBL· GenBank· DDBJ
Genomic DNA
KJ399864
EMBL· GenBank· DDBJ
AHM90228.1
EMBL· GenBank· DDBJ
Genomic DNA
KJ399868
EMBL· GenBank· DDBJ
AHM90464.1
EMBL· GenBank· DDBJ
Genomic DNA
KJ399870
EMBL· GenBank· DDBJ
AHM90582.1
EMBL· GenBank· DDBJ
Genomic DNA
KJ399871
EMBL· GenBank· DDBJ
AHM90641.1
EMBL· GenBank· DDBJ
Genomic DNA
KJ399872
EMBL· GenBank· DDBJ
AHM90700.1
EMBL· GenBank· DDBJ
Genomic DNA

Similar Proteins

Disclaimer

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