V4NRD1 · V4NRD1_9CAUL
- ProteinRibonuclease E
- Generne
- StatusUniProtKB unreviewed (TrEMBL)
- Organism
- Amino acids922 (go to sequence)
- Protein existenceInferred from homology
- Annotation score4/5
Function
function
Endoribonuclease that plays a central role in RNA processing and decay. Required for the maturation of 5S and 16S rRNAs and the majority of tRNAs. Also involved in the degradation of most mRNAs.
Catalytic activity
Cofactor
Protein has several cofactor binding sites:
Note: Binds 1 Mg2+ ion per subunit.
Note: Binds 2 Zn2+ ions per homotetramer.
Features
Showing features for binding site.
Type | ID | Position(s) | Description | ||
---|---|---|---|---|---|
Binding site | 362 | Mg2+ (UniProtKB | ChEBI); catalytic | |||
Binding site | 405 | Mg2+ (UniProtKB | ChEBI); catalytic | |||
Binding site | 463 | Zn2+ (UniProtKB | ChEBI); ligand shared between dimeric partners | |||
Binding site | 466 | Zn2+ (UniProtKB | ChEBI); ligand shared between dimeric partners | |||
GO annotations
Aspect | Term | |
---|---|---|
Cellular Component | cytoplasm | |
Cellular Component | cytoplasmic side of plasma membrane | |
Molecular Function | magnesium ion binding | |
Molecular Function | ribonuclease E activity | |
Molecular Function | RNA endonuclease activity | |
Molecular Function | rRNA binding | |
Molecular Function | tRNA binding | |
Molecular Function | zinc ion binding | |
Biological Process | mRNA catabolic process | |
Biological Process | rRNA processing | |
Biological Process | tRNA processing |
Keywords
- Molecular function
- Biological process
- Ligand
Enzyme and pathway databases
Names & Taxonomy
Protein names
- Recommended nameRibonuclease E
- EC number
- Short namesRNase E
Gene names
Organism names
- Organism
- Strain
- Taxonomic lineageBacteria > Pseudomonadota > Alphaproteobacteria > Caulobacterales > Caulobacteraceae > Asticcacaulis
Accessions
- Primary accessionV4NRD1
Proteomes
Subcellular Location
UniProt Annotation
GO Annotation
Cell inner membrane ; Peripheral membrane protein
Keywords
- Cellular component
Interaction
Structure
Family & Domains
Features
Showing features for domain, region, coiled coil, compositional bias.
Type | ID | Position(s) | Description | ||
---|---|---|---|---|---|
Domain | 43-178 | S1 motif | |||
Region | 105-133 | Disordered | |||
Coiled coil | 376-429 | ||||
Region | 463-466 | Required for zinc-mediated homotetramerization and catalytic activity | |||
Region | 558-679 | Disordered | |||
Compositional bias | 568-595 | Acidic residues | |||
Compositional bias | 596-610 | Basic and acidic residues | |||
Compositional bias | 611-620 | Basic residues | |||
Compositional bias | 621-630 | Basic and acidic residues | |||
Compositional bias | 636-650 | Acidic residues | |||
Compositional bias | 655-666 | Basic residues | |||
Region | 733-803 | Disordered | |||
Compositional bias | 756-766 | Basic residues | |||
Region | 892-922 | Disordered | |||
Sequence similarities
Belongs to the RNase E/G family. RNase E subfamily.
Belongs to the RNase E/G family. RNase G subfamily.
Keywords
- Domain
Phylogenomic databases
Family and domain databases
Sequence
- Sequence statusComplete
- Length922
- Mass (Da)102,533
- Last updated2014-01-22 v1
- MD5 ChecksumC433F62635B911528D7E51D50212053C
Features
Showing features for compositional bias.
Type | ID | Position(s) | Description | ||
---|---|---|---|---|---|
Compositional bias | 568-595 | Acidic residues | |||
Compositional bias | 596-610 | Basic and acidic residues | |||
Compositional bias | 611-620 | Basic residues | |||
Compositional bias | 621-630 | Basic and acidic residues | |||
Compositional bias | 636-650 | Acidic residues | |||
Compositional bias | 655-666 | Basic residues | |||
Compositional bias | 756-766 | Basic residues | |||
Keywords
- Technical term
Sequence databases
Nucleotide Sequence | Protein Sequence | Molecule Type | Status | |
---|---|---|---|---|
AWGE01000007 EMBL· GenBank· DDBJ | ESQ84357.1 EMBL· GenBank· DDBJ | Genomic DNA |