S9V2S8 · S9V2S8_9TRYP

  • Protein
    Small nuclear ribonucleoprotein Sm D3
  • Status
    UniProtKB unreviewed (TrEMBL)
  • Amino acids
  • Protein existence
    Inferred from homology
  • Annotation score
    3/5

Function

Caution

The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.

GO annotations

all annotationsall molecular functionvirus receptor activitydna bindingrna bindingcytoskeletal motor activitycatalytic activitygtpase activitystructural molecule activitytransporter activitycytoskeletal protein bindinglipid bindingcyclase activityantioxidant activityoxidoreductase activitytransferase activityhydrolase activitylyase activityisomerase activityligase activityprotein tag activitycargo receptor activityhistone bindingprotein folding chaperonetranslation regulator activitynutrient reservoir activityreceptor ligand activitymolecular transducer activitymolecular adaptor activitytoxin activitycell adhesion mediator activitymolecular function regulator activityvirus coreceptor activitycatalytic activity, acting on a proteincatalytic activity, acting on dnacatalytic activity, acting on rnamolecular carrier activitytranscription regulator activitygeneral transcription initiation factor activitymolecular sensor activitymolecular sequestering activityatp-dependent activityother molecular functionall biological processmitotic cell cyclecytokinesiscytoplasmic translationimmune system processmuscle system processcirculatory system processrenal system processrespiratory system processcarbohydrate metabolic processgeneration of precursor metabolites and energydna replicationdna repairdna recombinationchromatin organizationdna-templated transcriptionregulation of dna-templated transcriptiontrna metabolic processprotein foldingprotein glycosylationamino acid metabolic processmodified amino acid metabolic processlipid metabolic processvitamin metabolic processsulfur compound metabolic processintracellular protein transportnucleocytoplasmic transportautophagyinflammatory responsemitochondrion organizationcytoskeleton organizationmicrotubule-based movementperoxisome organizationlysosome organizationchromosome segregationcell adhesionestablishment or maintenance of cell polarityprogrammed cell deathphotosynthesismrna metabolic processsnrna metabolic processvesicle-mediated transportreproductive processdigestive system processsignalingcell differentiationprotein catabolic processextracellular matrix organizationregulatory ncrna-mediated gene silencingtelomere organizationcell junction organizationwound healingribosome biogenesiscilium organizationanatomical structure developmentcell motilitynervous system processendocrine processprotein maturationtransmembrane transportnucleobase-containing small molecule metabolic processhepaticobiliary system processmembrane organizationprotein-containing complex assemblycell wall organization or biogenesisnitrogen cycle metabolic processprotein localization to plasma membranedefense response to other organismdetoxificationmeiotic nuclear divisionmitotic nuclear divisionmitochondrial gene expressioncarbohydrate derivative metabolic processother biological processall cellular componentnuclear chromosomeextracellular regionextracellular spacecell wallnucleusnuclear envelopenucleoplasmchromosomenucleolusmitochondrionlysosomeendosomevacuoleperoxisomeendoplasmic reticulumgolgi apparatuslipid dropletmicrotubule organizing centercytosolribosomecytoskeletonplasma membraneciliumplastidthylakoidexternal encapsulating structureextracellular matrixcytoplasmic vesicleorganelleother cellular component
Cell color indicative of number of GO terms
AspectTerm
Cellular Componentcatalytic step 2 spliceosome
Cellular Componentcommitment complex
Cellular Componentcytosol
Cellular ComponentpICln-Sm protein complex
Cellular Componentprecatalytic spliceosome
Cellular ComponentSMN-Sm protein complex
Cellular Componentspliceosomal tri-snRNP complex
Cellular ComponentU1 snRNP
Cellular ComponentU12-type spliceosomal complex
Cellular ComponentU2 snRNP
Cellular ComponentU4 snRNP
Cellular ComponentU5 snRNP
Molecular FunctionRNA binding
Biological Processspliceosomal snRNP assembly

Keywords

Names & Taxonomy

Protein names

  • Recommended name
    Small nuclear ribonucleoprotein Sm D3
  • Short names
    Sm-D3
  • Alternative names
    • snRNP core protein D3

Gene names

    • ORF names
      STCU_00316
      , STCU_01161

Organism names

  • Taxonomic identifier
  • Organism
  • Taxonomic lineage
    Eukaryota > Discoba > Euglenozoa > Kinetoplastea > Metakinetoplastina > Trypanosomatida > Trypanosomatidae > Strigomonadinae > Strigomonas

Accessions

  • Primary accession
    S9V2S8

Proteomes

Family & Domains

Features

Showing features for domain.

TypeIDPosition(s)Description
Domain6-78Sm

Sequence similarities

Belongs to the snRNP core protein family.

Phylogenomic databases

Family and domain databases

Sequence

  • Sequence status
    Complete
  • Length
    113
  • Mass (Da)
    11,962
  • Last updated
    2013-10-16 v1
  • Checksum
    A4B7015A50DABE87
MSQTSVPLKVLFDAIDTTVSLEVANGEVYTGALAEVQETMNITLKKATKISLSGKESHYETVFIRGSNVVFFQLPDALQCSPALVAAGKAVAKALDSRGDGKGFGAGRKRGRE

Keywords

Sequence databases

Nucleotide SequenceProtein SequenceMolecule TypeStatus
ATMH01001161
EMBL· GenBank· DDBJ
EPY35278.1
EMBL· GenBank· DDBJ
Genomic DNA
ATMH01000316
EMBL· GenBank· DDBJ
EPY36968.1
EMBL· GenBank· DDBJ
Genomic DNA

Genome annotation databases

Similar Proteins

Disclaimer

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