R7WKE6 · R7WKE6_9NOCA
- ProteinRiboflavin biosynthesis protein RibBA
- GeneribBA
- StatusUniProtKB unreviewed (TrEMBL)
- Organism
- Amino acids452 (go to sequence)
- Protein existenceInferred from homology
- Annotation score4/5
Function
function
Catalyzes the conversion of D-ribulose 5-phosphate to formate and 3,4-dihydroxy-2-butanone 4-phosphate.
Catalyzes the conversion of GTP to 2,5-diamino-6-ribosylamino-4(3H)-pyrimidinone 5'-phosphate (DARP), formate and pyrophosphate.
Catalytic activity
- D-ribulose 5-phosphate = (2S)-2-hydroxy-3-oxobutyl phosphate + formate + H+
Cofactor
Protein has several cofactor binding sites:
Mn2+ (UniProtKB | Rhea| CHEBI:29035 )
Note: Binds 2 divalent metal cations per subunit. Magnesium or manganese.
Note: Binds 1 zinc ion per subunit.
Pathway
Cofactor biosynthesis; riboflavin biosynthesis; 2-hydroxy-3-oxobutyl phosphate from D-ribulose 5-phosphate: step 1/1.
Cofactor biosynthesis; riboflavin biosynthesis; 5-amino-6-(D-ribitylamino)uracil from GTP: step 1/4.
Features
Showing features for binding site, site, active site.
Type | ID | Position(s) | Description | |||
---|---|---|---|---|---|---|
Binding site | 48-49 | D-ribulose 5-phosphate (UniProtKB | ChEBI) | ||||
Sequence: RE | ||||||
Binding site | 49 | Mg2+ 1 (UniProtKB | ChEBI) | ||||
Sequence: E | ||||||
Binding site | 49 | Mg2+ 2 (UniProtKB | ChEBI) | ||||
Sequence: E | ||||||
Binding site | 53 | D-ribulose 5-phosphate (UniProtKB | ChEBI) | ||||
Sequence: D | ||||||
Site | 147 | Essential for DHBP synthase activity | ||||
Sequence: H | ||||||
Binding site | 161-165 | D-ribulose 5-phosphate (UniProtKB | ChEBI) | ||||
Sequence: RPGHT | ||||||
Binding site | 164 | Mg2+ 2 (UniProtKB | ChEBI) | ||||
Sequence: H | ||||||
Binding site | 185 | D-ribulose 5-phosphate (UniProtKB | ChEBI) | ||||
Sequence: E | ||||||
Site | 185 | Essential for DHBP synthase activity | ||||
Sequence: E | ||||||
Binding site | 279-283 | GTP (UniProtKB | ChEBI) | ||||
Sequence: RVHSE | ||||||
Binding site | 284 | Zn2+ (UniProtKB | ChEBI); catalytic | ||||
Sequence: C | ||||||
Binding site | 295 | Zn2+ (UniProtKB | ChEBI); catalytic | ||||
Sequence: C | ||||||
Binding site | 297 | Zn2+ (UniProtKB | ChEBI); catalytic | ||||
Sequence: C | ||||||
Binding site | 300 | GTP (UniProtKB | ChEBI) | ||||
Sequence: Q | ||||||
Binding site | 323-325 | GTP (UniProtKB | ChEBI) | ||||
Sequence: EGR | ||||||
Binding site | 345 | GTP (UniProtKB | ChEBI) | ||||
Sequence: T | ||||||
Active site | 357 | Proton acceptor; for GTP cyclohydrolase activity | ||||
Sequence: D | ||||||
Active site | 359 | Nucleophile; for GTP cyclohydrolase activity | ||||
Sequence: R | ||||||
Binding site | 380 | GTP (UniProtKB | ChEBI) | ||||
Sequence: T | ||||||
Binding site | 385 | GTP (UniProtKB | ChEBI) | ||||
Sequence: K |
GO annotations
Aspect | Term | |
---|---|---|
Molecular Function | 3,4-dihydroxy-2-butanone-4-phosphate synthase activity | |
Molecular Function | GTP binding | |
Molecular Function | GTP cyclohydrolase II activity | |
Molecular Function | magnesium ion binding | |
Molecular Function | manganese ion binding | |
Molecular Function | zinc ion binding | |
Biological Process | riboflavin biosynthetic process |
Keywords
- Molecular function
- Biological process
- Ligand
Enzyme and pathway databases
Names & Taxonomy
Protein names
- Recommended nameRiboflavin biosynthesis protein RibBA
Including 2 domains:
- Recommended name3,4-dihydroxy-2-butanone 4-phosphate synthase
- EC number
- Short namesDHBP synthase
- Recommended nameGTP cyclohydrolase-2
- EC number
- Alternative names
Gene names
Organism names
- Organism
- Strain
- Taxonomic lineageBacteria > Actinomycetota > Actinomycetes > Mycobacteriales > Nocardiaceae > Rhodococcus
Accessions
- Primary accessionR7WKE6
Proteomes
Interaction
Protein-protein interaction databases
Structure
Family & Domains
Features
Showing features for region, domain.
Type | ID | Position(s) | Description | |||
---|---|---|---|---|---|---|
Region | 1-224 | DHBP synthase | ||||
Sequence: MLTRTPGDDSEWRNDPSGVEVTRFDSIERAVADIAAGKAVVVVDDEDRENEGDLIFAAEKATPELVAFMVRYTSGYLCVPMTGADCDRLGLPPMYATNQDKHGTAYTVTVDAKDGIGTGISASDRATTMRKLADETTGAADFTRPGHVVPLRAKEGGVLRRPGHTEAAVDLARMADLRPAGVICEIVSQKDEGEMARTDELRVFADDHDLALISIADLIAWRRK | ||||||
Region | 225-452 | GTP cyclohydrolase II | ||||
Sequence: HEKQVVRVASARIPTRHGEFTAVGYKSLYDDVEHVALVRGDVAGPDGDGADVLVRVHSECLTGDVFGSLRCDCGPQLDAALDMVAQEGRGIVLYMRGHEGRGIGLLHKLQAYQLQDAGVDTVDANLQLGLPADARDYGTGAQILVDLGVTSMRLLTNNPAKRVGLDGYGLEIVDRVAMPLRANSENLTYLRTKRDRMGHDLVGLDEFEVDTPAEPGDYFQASGQGDAP | ||||||
Domain | 231-400 | GTP cyclohydrolase II | ||||
Sequence: RVASARIPTRHGEFTAVGYKSLYDDVEHVALVRGDVAGPDGDGADVLVRVHSECLTGDVFGSLRCDCGPQLDAALDMVAQEGRGIVLYMRGHEGRGIGLLHKLQAYQLQDAGVDTVDANLQLGLPADARDYGTGAQILVDLGVTSMRLLTNNPAKRVGLDGYGLEIVDRV |
Sequence similarities
In the C-terminal section; belongs to the GTP cyclohydrolase II family.
In the N-terminal section; belongs to the DHBP synthase family.
Phylogenomic databases
Family and domain databases
Sequence
- Sequence statusComplete
- Length452
- Mass (Da)48,772
- Last updated2013-07-24 v1
- ChecksumEEF0B7B219E20969
Keywords
- Technical term
Sequence databases
Nucleotide Sequence | Protein Sequence | Molecule Type | Status | |
---|---|---|---|---|
APMY01000082 EMBL· GenBank· DDBJ | EOM75786.1 EMBL· GenBank· DDBJ | Genomic DNA |