R0GMC6 · R0GMC6_9BRAS

  • Protein
    Pectate lyase
  • Status
    UniProtKB unreviewed (TrEMBL)
  • Amino acids
  • Protein existence
    Inferred from homology
  • Annotation score
    2/5

Function

Catalytic activity

  • Eliminative cleavage of (1->4)-alpha-D-galacturonan to give oligosaccharides with 4-deoxy-alpha-D-galact-4-enuronosyl groups at their non-reducing ends.
    EC:4.2.2.2 (UniProtKB | ENZYME | Rhea)

Cofactor

Ca2+ (UniProtKB | Rhea| CHEBI:29108 )

Note: Binds 1 Ca2+ ion. Required for its activity.

Pathway

Glycan metabolism; pectin degradation; 2-dehydro-3-deoxy-D-gluconate from pectin: step 2/5.

GO annotations

all annotationsall molecular functionnucleotide bindingmolecular_functionnucleic acid bindingdna bindingchromatin bindingdna-binding transcription factor activityrna bindingcytoskeletal motor activitycatalytic activitynuclease activitysignaling receptor bindingstructural molecule activitytransporter activitybindingprotein bindingtranslation factor activity, rna bindinglipid bindingkinase activitytransferase activityhydrolase activityoxygen bindingenzyme regulator activitycarbohydrate bindingsignaling receptor activitytranslation regulator activitytranscription regulator activityother molecular functionall biological processcarbohydrate metabolic processgeneration of precursor metabolites and energynucleobase-containing compound metabolic processdna metabolic processtranslationlipid metabolic processtransportresponse to stresscell cyclecell communicationsignal transductioncell-cell signalingmulticellular organism developmentcircadian rhythmbiological_processmetabolic processcatabolic processbiosynthetic processresponse to light stimulusresponse to external stimulustropismresponse to biotic stimulusresponse to abiotic stimulusresponse to endogenous stimulusembryo developmentpost-embryonic developmentfruit ripeningabscissionpollinationflower developmentcellular processprogrammed cell deathphotosynthesiscellular component organizationcell growthprotein metabolic processcellular homeostasissecondary metabolic processreproductive processcell differentiationprotein modification processgrowthepigenetic regulation of gene expressionresponse to chemicalanatomical structure developmentregulation of molecular functionother biological processall cellular componentcellular_componentextracellular regioncell wallintracellular anatomical structurenucleusnuclear envelopenucleoplasmnucleoluscytoplasmmitochondrionlysosomeendosomevacuoleperoxisomeendoplasmic reticulumgolgi apparatuscytosolribosomecytoskeletonplasma membranechloroplastplastidthylakoidmembraneexternal encapsulating structureother cellular component
Cell color indicative of number of GO terms
AspectTerm
Molecular Functionmetal ion binding
Molecular Functionpectate lyase activity
Biological Processpectin catabolic process

Keywords

Enzyme and pathway databases

Names & Taxonomy

Protein names

  • Recommended name
    Pectate lyase
  • EC number

Gene names

    • ORF names
      CARUB_v10006459mg

Organism names

  • Taxonomic identifier
  • Organism
  • Strain
    • cv. Monte Gargano
  • Taxonomic lineage
    Eukaryota > Viridiplantae > Streptophyta > Embryophyta > Tracheophyta > Spermatophyta > Magnoliopsida > eudicotyledons > Gunneridae > Pentapetalae > rosids > malvids > Brassicales > Brassicaceae > Camelineae > Capsella

Accessions

  • Primary accession
    R0GMC6

Proteomes

PTM/Processing

Features

Showing features for signal, chain.

Type
IDPosition(s)Description
Signal1-24
ChainPRO_500514512325-374Pectate lyase

Interaction

Protein-protein interaction databases

Family & Domains

Features

Showing features for domain.

TypeIDPosition(s)Description
Domain113-297Pectate lyase

Sequence similarities

Belongs to the polysaccharide lyase 1 family.

Keywords

Phylogenomic databases

Family and domain databases

Sequence

  • Sequence status
    Complete
  • Length
    374
  • Mass (Da)
    40,374
  • Last updated
    2013-06-26 v1
  • Checksum
    DA7E8BB9FDDFFBCF
MDSLVITISLVFAILASLLVESSAHNHSDDGYTLATATLNPIDACWRKNPKWSTNRQALAHCAVGFGKAALGGKAGAIYVVTSPLDDPVKPKPGTLRFGVIQSKPLWITFARSMVIVLKVELSVNSYKTIDGRGAKVEIANGPCVRMRLVKHVIIHGISIHDCKPGPKEGPDGDAIRVFQSSHIWIDHCFLSRSQDGLIDVISSSTAVTISNNKFTNHDKVILLGHDDKFTGDKVMKVTVAFNYFGPGLIERMPRVRRGYAHVANNRYDKWKMYAIGGSADPIIFSEGNYFVAPDNKNAKEVTKRVGSAAEIKKWKWGTSKDVFLNGAFFVPSGGPAVKPAYAKGEAFPVAPGSLVPSLTASAGPLNCVVGKIC

Keywords

Sequence databases

Nucleotide SequenceProtein SequenceMolecule TypeStatus
KB870811
EMBL· GenBank· DDBJ
EOA18019.1
EMBL· GenBank· DDBJ
Genomic DNA

Genome annotation databases

Similar Proteins

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