Q9ZV45 · Q9ZV45_ARATH

Function

function

Plays a role in pre-mRNA splicing as a core component of the spliceosomal U1, U2, U4 and U5 small nuclear ribonucleoproteins (snRNPs), the building blocks of the spliceosome.

GO annotations

all annotationsall molecular functionnucleotide bindingmolecular_functionnucleic acid bindingdna bindingchromatin bindingdna-binding transcription factor activityrna bindingcytoskeletal motor activitycatalytic activitynuclease activitysignaling receptor bindingstructural molecule activitytransporter activitybindingprotein bindingtranslation factor activity, rna bindinglipid bindingkinase activitytransferase activityhydrolase activityoxygen bindingenzyme regulator activitycarbohydrate bindingsignaling receptor activitytranslation regulator activitytranscription regulator activityother molecular functionall biological processcarbohydrate metabolic processgeneration of precursor metabolites and energynucleobase-containing compound metabolic processdna metabolic processtranslationlipid metabolic processtransportresponse to stresscell cyclecell communicationsignal transductioncell-cell signalingmulticellular organism developmentcircadian rhythmbiological_processmetabolic processcatabolic processbiosynthetic processresponse to light stimulusresponse to external stimulustropismresponse to biotic stimulusresponse to abiotic stimulusresponse to endogenous stimulusembryo developmentpost-embryonic developmentfruit ripeningabscissionpollinationflower developmentcellular processprogrammed cell deathphotosynthesiscellular component organizationcell growthprotein metabolic processcellular homeostasissecondary metabolic processreproductive processcell differentiationprotein modification processgrowthepigenetic regulation of gene expressionresponse to chemicalanatomical structure developmentregulation of molecular functionother biological processall cellular componentcellular_componentextracellular regioncell wallintracellular anatomical structurenucleusnuclear envelopenucleoplasmnucleoluscytoplasmmitochondrionlysosomeendosomevacuoleperoxisomeendoplasmic reticulumgolgi apparatuscytosolribosomecytoskeletonplasma membranechloroplastplastidthylakoidmembraneexternal encapsulating structureother cellular component
Cell color indicative of number of GO terms
AspectTerm
Cellular Componentspliceosomal complex
Cellular ComponentU1 snRNP
Cellular ComponentU2 snRNP
Cellular ComponentU4 snRNP
Cellular ComponentU4/U6 x U5 tri-snRNP complex
Cellular ComponentU5 snRNP
Molecular FunctionRNA binding
Biological Processregulation of meristem development
Biological Processregulation of RNA splicing
Biological ProcessRNA splicing
Biological Processspliceosomal snRNP assembly

Keywords

Names & Taxonomy

Protein names

  • Recommended name
    Small nuclear ribonucleoprotein E
  • Short names
    snRNP-E
  • Alternative names
    • Sm protein E

Gene names

    • Name
      PCP
    • Synonyms
      MSF3.12
      , MSF3_12
    • Ordered locus names
      At2g18740

Organism names

  • Taxonomic identifier
  • Strain
    • cv. Columbia
  • Taxonomic lineage
    Eukaryota > Viridiplantae > Streptophyta > Embryophyta > Tracheophyta > Spermatophyta > Magnoliopsida > eudicotyledons > Gunneridae > Pentapetalae > rosids > malvids > Brassicales > Brassicaceae > Camelineae > Arabidopsis

Accessions

  • Primary accession
    Q9ZV45

Proteomes

Organism-specific databases

Genome annotation databases

Subcellular Location

Keywords

PTM/Processing

Proteomic databases

Expression

Gene expression databases

Interaction

Protein-protein interaction databases

Structure

Family & Domains

Features

Showing features for domain.

TypeIDPosition(s)Description
Domain16-88Sm

Sequence similarities

Belongs to the snRNP Sm proteins family.

Phylogenomic databases

Family and domain databases

Sequence

  • Sequence status
    Complete
  • Length
    88
  • Mass (Da)
    10,298
  • Last updated
    1999-05-01 v1
  • Checksum
    762719DD9FDF35C5
MASTKVQRIMTQPINLIFRFLQSKARIQIWLFEQKDLRIEGRITGFDEYMNLVLDEAEEVSIKKNTRKPLGRILLKGDNITLMMNTGK

Computationally mapped potential isoform sequences

There is 1 potential isoform mapped to this entry

View all
EntryEntry nameGene nameLength
A8MRL6A8MRL6_ARATHPCP78

Keywords

Sequence databases

Nucleotide SequenceProtein SequenceMolecule TypeStatus
AC005724
EMBL· GenBank· DDBJ
AAD08943.1
EMBL· GenBank· DDBJ
Genomic DNA
AY086369
EMBL· GenBank· DDBJ
AAM64436.1
EMBL· GenBank· DDBJ
mRNA
BT005662
EMBL· GenBank· DDBJ
AAO64082.1
EMBL· GenBank· DDBJ
mRNA
CP002685
EMBL· GenBank· DDBJ
AEC06800.1
EMBL· GenBank· DDBJ
Genomic DNA
AK118809
EMBL· GenBank· DDBJ
BAC43399.1
EMBL· GenBank· DDBJ
mRNA

Genome annotation databases

Similar Proteins

Disclaimer

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