Q9ZST0 · RK5_ORYSJ

Function

function

Binds 5S rRNA, forms part of the central protuberance of the 50S subunit.

GO annotations

all annotationsall molecular functionnucleotide bindingmolecular_functionnucleic acid bindingdna bindingchromatin bindingdna-binding transcription factor activityrna bindingcytoskeletal motor activitycatalytic activitynuclease activitysignaling receptor bindingstructural molecule activitytransporter activitybindingprotein bindingtranslation factor activity, rna bindinglipid bindingkinase activitytransferase activityhydrolase activityoxygen bindingenzyme regulator activitycarbohydrate bindingsignaling receptor activitytranslation regulator activitytranscription regulator activityother molecular functionall biological processcarbohydrate metabolic processgeneration of precursor metabolites and energynucleobase-containing compound metabolic processdna metabolic processtranslationlipid metabolic processtransportresponse to stresscell cyclecell communicationsignal transductioncell-cell signalingmulticellular organism developmentcircadian rhythmbiological_processmetabolic processcatabolic processbiosynthetic processresponse to light stimulusresponse to external stimulustropismresponse to biotic stimulusresponse to abiotic stimulusresponse to endogenous stimulusembryo developmentpost-embryonic developmentfruit ripeningabscissionpollinationflower developmentcellular processprogrammed cell deathphotosynthesiscellular component organizationcell growthprotein metabolic processcellular homeostasissecondary metabolic processreproductive processcell differentiationprotein modification processgrowthepigenetic regulation of gene expressionresponse to chemicalanatomical structure developmentregulation of molecular functionother biological processall cellular componentcellular_componentextracellular regioncell wallintracellular anatomical structurenucleusnuclear envelopenucleoplasmnucleoluscytoplasmmitochondrionlysosomeendosomevacuoleperoxisomeendoplasmic reticulumgolgi apparatuscytosolribosomecytoskeletonplasma membranechloroplastplastidthylakoidmembraneexternal encapsulating structureother cellular component
Cell color indicative of number of GO terms
AspectTerm
Cellular Componentchloroplast
Cellular Componentribonucleoprotein complex
Cellular Componentribosome
Molecular FunctionmRNA binding
Molecular FunctionRNA binding
Molecular FunctionrRNA binding
Molecular Functionstructural constituent of ribosome
Biological Processtranslation

Keywords

Names & Taxonomy

Protein names

  • Recommended name
    Large ribosomal subunit protein uL5c
  • Alternative names
    • 50S ribosomal protein L5, chloroplastic

Gene names

    • Name
      RPL5
    • Ordered locus names
      Os03g0125000, LOC_Os03g03360

Organism names

  • Taxonomic identifier
  • Strains
    • cv. Ilpoom
    • cv. Nipponbare
  • Taxonomic lineage
    Eukaryota > Viridiplantae > Streptophyta > Embryophyta > Tracheophyta > Spermatophyta > Magnoliopsida > Liliopsida > Poales > Poaceae > BOP clade > Oryzoideae > Oryzeae > Oryzinae > Oryza > Oryza sativa

Accessions

  • Primary accession
    Q9ZST0
  • Secondary accessions
    • Q10SE8

Proteomes

Genome annotation databases

Subcellular Location

PTM/Processing

Features

Showing features for transit peptide, chain.

TypeIDPosition(s)Description
Transit peptide1-43Chloroplast
ChainPRO_000003054344-279Large ribosomal subunit protein uL5c

Proteomic databases

Interaction

Subunit

Part of the 50S ribosomal subunit; contacts the 5S rRNA.

Protein-protein interaction databases

Structure

Family & Domains

Features

Showing features for region.

TypeIDPosition(s)Description
Region1-23Disordered
Region40-63Disordered

Sequence similarities

Keywords

Phylogenomic databases

Family and domain databases

Sequence

  • Sequence status
    Complete
  • Sequence processing
    The displayed sequence is further processed into a mature form.
  • Length
    279
  • Mass (Da)
    30,219
  • Last updated
    2006-06-27 v2
  • Checksum
    70B387C1A5B8AEDB
MAATAVTLPSSPAPFPVTTTASSSRNVRLLLRSPPPRRALRVAASAAADAPPKPAPPPTSPSGIVLVDPTEAQKVHRLKAVYDQKVVPLITEEFGYTNVHQVPKVEKIVVNCGLGAEAGNSKGLESAMKDLAMITGQWPVKTKAKKSVASFKIREGNTIGIAVTLRGRVMFNFLDRLINLGLPRTMDFLGVNPNSFDGHGNFTIGLRDQGVFPEIPYEVGGKKNGMDVCIVTTAKTDNEALRLLTLLGMPFAEHIKSSVVIRKKRLKRHHFMSKGRGRR

Features

Showing features for sequence conflict.

TypeIDPosition(s)Description
Sequence conflict1-3in Ref. 1

Keywords

Sequence databases

Nucleotide SequenceProtein SequenceMolecule TypeStatus
AF095708
EMBL· GenBank· DDBJ
AAC64970.1
EMBL· GenBank· DDBJ
mRNA
AC119747
EMBL· GenBank· DDBJ
-Genomic DNA No translation available.
DP000009
EMBL· GenBank· DDBJ
ABF93741.1
EMBL· GenBank· DDBJ
Genomic DNA
AP008209
EMBL· GenBank· DDBJ
BAF10728.1
EMBL· GenBank· DDBJ
Genomic DNA
AP014959
EMBL· GenBank· DDBJ
BAS82066.1
EMBL· GenBank· DDBJ
Genomic DNA
AK059557
EMBL· GenBank· DDBJ
BAG87031.1
EMBL· GenBank· DDBJ
mRNA
AK070779
EMBL· GenBank· DDBJ
BAG92135.1
EMBL· GenBank· DDBJ
mRNA
AK098999
EMBL· GenBank· DDBJ
BAG93857.1
EMBL· GenBank· DDBJ
mRNA
AK104137
EMBL· GenBank· DDBJ
BAG96446.1
EMBL· GenBank· DDBJ
mRNA

Genome annotation databases

Similar Proteins

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