Q9ZST0 · RK5_ORYSJ
- ProteinLarge ribosomal subunit protein uL5c
- GeneRPL5
- StatusUniProtKB reviewed (Swiss-Prot)
- Amino acids279 (go to sequence)
- Protein existenceEvidence at transcript level
- Annotation score3/5
Function
function
Binds 5S rRNA, forms part of the central protuberance of the 50S subunit.
GO annotations
all annotations | all molecular function | nucleotide binding | molecular_function | nucleic acid binding | dna binding | chromatin binding | dna-binding transcription factor activity | rna binding | cytoskeletal motor activity | catalytic activity | nuclease activity | signaling receptor binding | structural molecule activity | transporter activity | binding | protein binding | translation factor activity, rna binding | lipid binding | kinase activity | transferase activity | hydrolase activity | oxygen binding | enzyme regulator activity | carbohydrate binding | signaling receptor activity | translation regulator activity | transcription regulator activity | other molecular function | all biological process | carbohydrate metabolic process | generation of precursor metabolites and energy | nucleobase-containing compound metabolic process | dna metabolic process | translation | lipid metabolic process | transport | response to stress | cell cycle | cell communication | signal transduction | cell-cell signaling | multicellular organism development | circadian rhythm | biological_process | metabolic process | catabolic process | biosynthetic process | response to light stimulus | response to external stimulus | tropism | response to biotic stimulus | response to abiotic stimulus | response to endogenous stimulus | embryo development | post-embryonic development | fruit ripening | abscission | pollination | flower development | cellular process | programmed cell death | photosynthesis | cellular component organization | cell growth | protein metabolic process | cellular homeostasis | secondary metabolic process | reproductive process | cell differentiation | protein modification process | growth | epigenetic regulation of gene expression | response to chemical | anatomical structure development | regulation of molecular function | other biological process | all cellular component | cellular_component | extracellular region | cell wall | intracellular anatomical structure | nucleus | nuclear envelope | nucleoplasm | nucleolus | cytoplasm | mitochondrion | lysosome | endosome | vacuole | peroxisome | endoplasmic reticulum | golgi apparatus | cytosol | ribosome | cytoskeleton | plasma membrane | chloroplast | plastid | thylakoid | membrane | external encapsulating structure | other cellular component | |||
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Aspect | Term | |
---|---|---|
Cellular Component | chloroplast | |
Cellular Component | ribonucleoprotein complex | |
Cellular Component | ribosome | |
Molecular Function | mRNA binding | |
Molecular Function | RNA binding | |
Molecular Function | rRNA binding | |
Molecular Function | structural constituent of ribosome | |
Biological Process | translation |
Keywords
- Molecular function
Names & Taxonomy
Protein names
- Recommended nameLarge ribosomal subunit protein uL5c
- Alternative names
Gene names
Organism names
- Strains
- Taxonomic lineageEukaryota > Viridiplantae > Streptophyta > Embryophyta > Tracheophyta > Spermatophyta > Magnoliopsida > Liliopsida > Poales > Poaceae > BOP clade > Oryzoideae > Oryzeae > Oryzinae > Oryza > Oryza sativa
Accessions
- Primary accessionQ9ZST0
- Secondary accessions
Proteomes
Genome annotation databases
Subcellular Location
PTM/Processing
Features
Showing features for transit peptide, chain.
Type | ID | Position(s) | Description | |||
---|---|---|---|---|---|---|
Transit peptide | 1-43 | Chloroplast | ||||
Sequence: MAATAVTLPSSPAPFPVTTTASSSRNVRLLLRSPPPRRALRVA | ||||||
Chain | PRO_0000030543 | 44-279 | Large ribosomal subunit protein uL5c | |||
Sequence: ASAAADAPPKPAPPPTSPSGIVLVDPTEAQKVHRLKAVYDQKVVPLITEEFGYTNVHQVPKVEKIVVNCGLGAEAGNSKGLESAMKDLAMITGQWPVKTKAKKSVASFKIREGNTIGIAVTLRGRVMFNFLDRLINLGLPRTMDFLGVNPNSFDGHGNFTIGLRDQGVFPEIPYEVGGKKNGMDVCIVTTAKTDNEALRLLTLLGMPFAEHIKSSVVIRKKRLKRHHFMSKGRGRR |
Proteomic databases
Interaction
Subunit
Part of the 50S ribosomal subunit; contacts the 5S rRNA.
Protein-protein interaction databases
Structure
Family & Domains
Features
Showing features for region.
Type | ID | Position(s) | Description | |||
---|---|---|---|---|---|---|
Region | 1-23 | Disordered | ||||
Sequence: MAATAVTLPSSPAPFPVTTTASS | ||||||
Region | 40-63 | Disordered | ||||
Sequence: LRVAASAAADAPPKPAPPPTSPSG |
Sequence similarities
Belongs to the universal ribosomal protein uL5 family.
Keywords
- Domain
Phylogenomic databases
Family and domain databases
Sequence
- Sequence statusComplete
- Sequence processingThe displayed sequence is further processed into a mature form.
- Length279
- Mass (Da)30,219
- Last updated2006-06-27 v2
- Checksum70B387C1A5B8AEDB
Features
Showing features for sequence conflict.
Type | ID | Position(s) | Description | |||
---|---|---|---|---|---|---|
Sequence conflict | 1-3 | in Ref. 1 | ||||
Sequence: MAA → HEAV |
Keywords
- Technical term
Sequence databases
Nucleotide Sequence | Protein Sequence | Molecule Type | Status | |
---|---|---|---|---|
AF095708 EMBL· GenBank· DDBJ | AAC64970.1 EMBL· GenBank· DDBJ | mRNA | ||
AC119747 EMBL· GenBank· DDBJ | - | Genomic DNA | No translation available. | |
DP000009 EMBL· GenBank· DDBJ | ABF93741.1 EMBL· GenBank· DDBJ | Genomic DNA | ||
AP008209 EMBL· GenBank· DDBJ | BAF10728.1 EMBL· GenBank· DDBJ | Genomic DNA | ||
AP014959 EMBL· GenBank· DDBJ | BAS82066.1 EMBL· GenBank· DDBJ | Genomic DNA | ||
AK059557 EMBL· GenBank· DDBJ | BAG87031.1 EMBL· GenBank· DDBJ | mRNA | ||
AK070779 EMBL· GenBank· DDBJ | BAG92135.1 EMBL· GenBank· DDBJ | mRNA | ||
AK098999 EMBL· GenBank· DDBJ | BAG93857.1 EMBL· GenBank· DDBJ | mRNA | ||
AK104137 EMBL· GenBank· DDBJ | BAG96446.1 EMBL· GenBank· DDBJ | mRNA |