Q9ZQ85 · EFM_ARATH

Function

function

Transcription factor acting as a flowering repressor, directly repressing FT expression in a dosage-dependent manner in the leaf vasculature.

Features

Showing features for dna binding.

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TypeIDPosition(s)Description
DNA binding261-286H-T-H motif

GO annotations

all annotationsall molecular functionnucleotide bindingmolecular_functionnucleic acid bindingdna bindingchromatin bindingdna-binding transcription factor activityrna bindingcytoskeletal motor activitycatalytic activitynuclease activitysignaling receptor bindingstructural molecule activitytransporter activitybindingprotein bindingtranslation factor activity, rna bindinglipid bindingkinase activitytransferase activityhydrolase activityoxygen bindingenzyme regulator activitycarbohydrate bindingsignaling receptor activitytranslation regulator activitytranscription regulator activityother molecular functionall biological processcarbohydrate metabolic processgeneration of precursor metabolites and energynucleobase-containing compound metabolic processdna metabolic processtranslationlipid metabolic processtransportresponse to stresscell cyclecell communicationsignal transductioncell-cell signalingmulticellular organism developmentcircadian rhythmbiological_processmetabolic processcatabolic processbiosynthetic processresponse to light stimulusresponse to external stimulustropismresponse to biotic stimulusresponse to abiotic stimulusresponse to endogenous stimulusembryo developmentpost-embryonic developmentfruit ripeningabscissionpollinationflower developmentcellular processprogrammed cell deathphotosynthesiscellular component organizationcell growthprotein metabolic processcellular homeostasissecondary metabolic processreproductive processcell differentiationprotein modification processgrowthepigenetic regulation of gene expressionresponse to chemicalanatomical structure developmentregulation of molecular functionother biological processall cellular componentcellular_componentextracellular regioncell wallintracellular anatomical structurenucleusnuclear envelopenucleoplasmnucleoluscytoplasmmitochondrionlysosomeendosomevacuoleperoxisomeendoplasmic reticulumgolgi apparatuscytosolribosomecytoskeletonplasma membranechloroplastplastidthylakoidmembraneexternal encapsulating structureother cellular component
Cell color indicative of number of GO terms
AspectTerm
Cellular Componentnucleus
Molecular FunctionDNA binding
Molecular FunctionDNA-binding transcription factor activity
Biological Processflower development
Biological Processgibberellic acid mediated signaling pathway
Biological Processnegative regulation of long-day photoperiodism, flowering
Biological Processregulation of DNA-templated transcription
Biological Processresponse to temperature stimulus

Keywords

Names & Taxonomy

Protein names

  • Recommended name
    Myb family transcription factor EFM
  • Alternative names
    • MYB-domain transcription factor HHO4
    • Protein EARLY FLOWERING MYB
    • Protein HRS1 HOMOLOG 4

Gene names

    • Name
      EFM
    • Synonyms
      HHO4
    • ORF names
      T4M8.7
    • Ordered locus names
      At2g03500

Organism names

  • Taxonomic identifier
  • Strain
    • cv. Columbia
  • Taxonomic lineage
    Eukaryota > Viridiplantae > Streptophyta > Embryophyta > Tracheophyta > Spermatophyta > Magnoliopsida > eudicotyledons > Gunneridae > Pentapetalae > rosids > malvids > Brassicales > Brassicaceae > Camelineae > Arabidopsis

Accessions

  • Primary accession
    Q9ZQ85
  • Secondary accessions
    • Q8W4S3

Proteomes

Organism-specific databases

Genome annotation databases

Subcellular Location

Keywords

Phenotypes & Variants

Disruption phenotype

Early flowering under both long-day and short-day conditions.

Variants

We now provide the "Disease & Variants" viewer in its own tab.

The viewer provides 48 variants from UniProt as well as other sources including ClinVar and dbSNP.

Go to variant viewer

PTM/Processing

Features

Showing features for chain.

TypeIDPosition(s)Description
ChainPRO_00004368721-432Myb family transcription factor EFM

Proteomic databases

PTM databases

Expression

Tissue specificity

Specifically expressed in vascular tissues of cotyledons, rosette leaves and cauline leaves. Not detected in the vegetative shoot apical meristem.

Induction

Up-regulated by SVP. Down-regulated by high temperature and gibberellic acid treatment. Not regulated by photoperiod, circadian rhythm under long days or vernalization.

Developmental stage

Expressed 3 days after germination, with a gradual decrease before the floral transition and remains at low levels afterward.

Gene expression databases

Interaction

Subunit

Interacts with JMJ30, but not with SVP, FLC or CO.

Binary interactions

TypeEntry 1Entry 2Number of experimentsIntAct
BINARY Q9ZQ85TCP14 Q93Z003EBI-4449948, EBI-4424563

Protein-protein interaction databases

Structure

Family & Domains

Features

Showing features for coiled coil, compositional bias, region, domain.

Type
IDPosition(s)Description
Coiled coil36-81
Compositional bias123-145Polar residues
Region123-237Disordered
Compositional bias183-235Polar residues
Domain230-290HTH myb-type
Region354-412Disordered
Compositional bias368-397Polar residues

Keywords

Phylogenomic databases

Family and domain databases

Sequence

  • Sequence status
    Complete
  • Length
    432
  • Mass (Da)
    47,962
  • Last updated
    2002-06-01 v2
  • MD5 Checksum
    77A2CC25ED83E36782A08EA10FC55446
MASSSELSLDCKPQSYSMLLKSFGDNFQSDPTTHKLEDLLSRLEQERLKIDAFKRELPLCMQLLNNAVEVYKQQLEAYRANSNNNNQSVGTRPVLEEFIPLRNQPEKTNNKGSNWMTTAQLWSQSETKPKNIDSTTDQSLPKDEINSSPKLGHFDAKQRNGSGAFLPFSKEQSLPELALSTEVKRVSPTNEHTNGQDGNDESMINNDNNYNNNNNNNSNSNGVSSTTSQSNRKARRCWSPDLHRRFVQALQMLGGSQVATPKQIRELMKVDGLTNDEVKSHLQKYRLHTRRPSPSPQTSGGPGPHLVVLGGIWVPPEYTSAHGGTPTLYHHQVHHHHTNTAGPPPPHFCSSQEFYTTPPPPQPLHHHHFQTFNGSSGGTASTDSTHHQVTDSPTVEGKSPESGGGERKGLAALREECEDHSNINGSEITLKF

Features

Showing features for compositional bias.

TypeIDPosition(s)Description
Compositional bias123-145Polar residues
Compositional bias183-235Polar residues
Compositional bias368-397Polar residues

Keywords

Sequence databases

Nucleotide SequenceProtein SequenceMolecule TypeStatus
AC006284
EMBL· GenBank· DDBJ
AAD17450.2
EMBL· GenBank· DDBJ
Genomic DNA
CP002685
EMBL· GenBank· DDBJ
AEC05707.1
EMBL· GenBank· DDBJ
Genomic DNA
AY060559
EMBL· GenBank· DDBJ
AAL31188.1
EMBL· GenBank· DDBJ
mRNA
AY133630
EMBL· GenBank· DDBJ
AAM91460.1
EMBL· GenBank· DDBJ
mRNA
AK221662
EMBL· GenBank· DDBJ
BAD95340.1
EMBL· GenBank· DDBJ
mRNA

Genome annotation databases

Similar Proteins

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