Q9Y3C1 · NOP16_HUMAN
- ProteinNucleolar protein 16
- GeneNOP16
- StatusUniProtKB reviewed (Swiss-Prot)
- Organism
- Amino acids178 (go to sequence)
- Protein existenceEvidence at protein level
- Annotation score4/5
Function
GO annotations
all annotations | all molecular function | virus receptor activity | dna binding | rna binding | cytoskeletal motor activity | catalytic activity | gtpase activity | structural molecule activity | transporter activity | cytoskeletal protein binding | lipid binding | cyclase activity | antioxidant activity | oxidoreductase activity | transferase activity | hydrolase activity | lyase activity | isomerase activity | ligase activity | protein tag activity | cargo receptor activity | histone binding | protein folding chaperone | translation regulator activity | nutrient reservoir activity | receptor ligand activity | molecular transducer activity | molecular adaptor activity | toxin activity | cell adhesion mediator activity | molecular function regulator activity | virus coreceptor activity | catalytic activity, acting on a protein | catalytic activity, acting on dna | catalytic activity, acting on rna | molecular carrier activity | transcription regulator activity | general transcription initiation factor activity | molecular sensor activity | molecular sequestering activity | atp-dependent activity | other molecular function | all biological process | mitotic cell cycle | cytokinesis | cytoplasmic translation | immune system process | muscle system process | circulatory system process | renal system process | respiratory system process | carbohydrate metabolic process | generation of precursor metabolites and energy | dna replication | dna repair | dna recombination | chromatin organization | dna-templated transcription | regulation of dna-templated transcription | trna metabolic process | protein folding | protein glycosylation | amino acid metabolic process | modified amino acid metabolic process | lipid metabolic process | vitamin metabolic process | sulfur compound metabolic process | intracellular protein transport | nucleocytoplasmic transport | autophagy | inflammatory response | mitochondrion organization | cytoskeleton organization | microtubule-based movement | peroxisome organization | lysosome organization | chromosome segregation | cell adhesion | establishment or maintenance of cell polarity | programmed cell death | photosynthesis | mrna metabolic process | snrna metabolic process | vesicle-mediated transport | reproductive process | digestive system process | signaling | cell differentiation | protein catabolic process | extracellular matrix organization | regulatory ncrna-mediated gene silencing | telomere organization | cell junction organization | wound healing | ribosome biogenesis | cilium organization | anatomical structure development | cell motility | nervous system process | endocrine process | protein maturation | transmembrane transport | nucleobase-containing small molecule metabolic process | hepaticobiliary system process | membrane organization | protein-containing complex assembly | cell wall organization or biogenesis | nitrogen cycle metabolic process | protein localization to plasma membrane | defense response to other organism | detoxification | meiotic nuclear division | mitotic nuclear division | mitochondrial gene expression | carbohydrate derivative metabolic process | other biological process | all cellular component | nuclear chromosome | extracellular region | extracellular space | cell wall | nucleus | nuclear envelope | nucleoplasm | chromosome | nucleolus | mitochondrion | lysosome | endosome | vacuole | peroxisome | endoplasmic reticulum | golgi apparatus | lipid droplet | microtubule organizing center | cytosol | ribosome | cytoskeleton | plasma membrane | cilium | plastid | thylakoid | external encapsulating structure | extracellular matrix | cytoplasmic vesicle | organelle | other cellular component | |||
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Aspect | Term | |
---|---|---|
Cellular Component | intracellular membrane-bounded organelle | |
Cellular Component | nucleolus | |
Cellular Component | nucleoplasm | |
Molecular Function | RNA binding | |
Biological Process | ribosomal large subunit biogenesis |
Enzyme and pathway databases
Names & Taxonomy
Protein names
- Recommended nameNucleolar protein 16
- Alternative names
Gene names
Organism names
- Organism
- Taxonomic lineageEukaryota > Metazoa > Chordata > Craniata > Vertebrata > Euteleostomi > Mammalia > Eutheria > Euarchontoglires > Primates > Haplorrhini > Catarrhini > Hominidae > Homo
Accessions
- Primary accessionQ9Y3C1
- Secondary accessions
Proteomes
Organism-specific databases
Subcellular Location
Disease & Variants
Variants
We now provide the "Disease & Variants" viewer in its own tab.
The viewer provides 219 variants from UniProt as well as other sources including ClinVar and dbSNP.
Organism-specific databases
Miscellaneous
Genetic variation databases
PTM/Processing
Features
Showing features for chain, modified residue, modified residue (large scale data), cross-link.
Type | ID | Position(s) | Source | Description | |||
---|---|---|---|---|---|---|---|
Chain | PRO_0000050817 | 1-178 | UniProt | Nucleolar protein 16 | |||
Sequence: MPKAKGKTRRQKFGYSVNRKRLNRNARRKAAPRIECSHIRHAWDHAKSVRQNLAEMGLAVDPNRAVPLRKRKVKAMEVDIEERPKELVRKPYVLNDLEAEASLPEKKGNTLSRDLIDYVRYMVENHGEDYKAMARDEKNYYQDTPKQIRSKINVYKRFYPAEWQDFLDSLQKRKMEVE | |||||||
Modified residue | 8 | UniProt | Phosphothreonine | ||||
Sequence: T | |||||||
Modified residue | 16 | UniProt | Phosphoserine | ||||
Sequence: S | |||||||
Modified residue (large scale data) | 16 | PRIDE | Phosphoserine | ||||
Sequence: S | |||||||
Cross-link | 74 | UniProt | Glycyl lysine isopeptide (Lys-Gly) (interchain with G-Cter in SUMO2) | ||||
Sequence: K | |||||||
Modified residue | 90 | UniProt | N6-acetyllysine | ||||
Sequence: K | |||||||
Modified residue | 144 | UniProt | Phosphothreonine | ||||
Sequence: T | |||||||
Modified residue (large scale data) | 144 | PRIDE | Phosphothreonine | ||||
Sequence: T | |||||||
Cross-link | 166 | UniProt | In isoform Q9Y3C1-2; Glycyl lysine isopeptide (Lys-Gly) (interchain with G-Cter in SUMO2) | ||||
Sequence: F | |||||||
Cross-link | 167 | UniProt | In isoform Q9Y3C1-3; Glycyl lysine isopeptide (Lys-Gly) (interchain with G-Cter in SUMO2) | ||||
Sequence: L | |||||||
Modified residue (large scale data) | 169 | PRIDE | Phosphoserine | ||||
Sequence: S | |||||||
Cross-link | 172 | UniProt | In isoform Q9Y3C1-2; Glycyl lysine isopeptide (Lys-Gly) (interchain with G-Cter in SUMO2) | ||||
Sequence: K | |||||||
Cross-link | 173 | UniProt | In isoform Q9Y3C1-3; Glycyl lysine isopeptide (Lys-Gly) (interchain with G-Cter in SUMO2) | ||||
Sequence: R |
Keywords
- PTM
Proteomic databases
PTM databases
Expression
Structure
Family & Domains
Features
Showing features for compositional bias, region.
Type | ID | Position(s) | Description | |||
---|---|---|---|---|---|---|
Compositional bias | 1-27 | Basic residues | ||||
Sequence: MPKAKGKTRRQKFGYSVNRKRLNRNAR | ||||||
Region | 1-31 | Disordered | ||||
Sequence: MPKAKGKTRRQKFGYSVNRKRLNRNARRKAA |
Sequence similarities
Belongs to the NOP16 family.
Phylogenomic databases
Family and domain databases
Sequence & Isoforms
- Sequence statusComplete
This entry describes 3 isoforms produced by Alternative splicing.
Q9Y3C1-1
This isoform has been chosen as the canonical sequence. All positional information in this entry refers to it. This is also the sequence that appears in the downloadable versions of the entry.
- Name1
- Length178
- Mass (Da)21,188
- Last updated2006-09-19 v2
- ChecksumD9139BE32DA81FC5
Q9Y3C1-2
- Name2
- Differences from canonical
- 132-178: AMARDEKNYYQDTPKQIRSKINVYKRFYPAEWQDFLDSLQKRKMEVE → SGKTSSILCRRGRWRWSDWFTSQLPQAEASPGPVKLEPGCKARRCCVAPEELARSHGIRRLHTRAHSPLWGRNCSQRLQFIFIWGFTEKPEPAVFRVGDVNIVCT
Q9Y3C1-3
- Name3
- Differences from canonical
- 132-178: AMARDEKNYYQDTPKQIRSKINVYKRFYPAEWQDFLDSLQKRKMEVE → QSGKTSSILCRRGRWRWSDWFTSQLPQAEASPGPVKLEPGCKARRCCVAPEELARSHGIRRLHTHVHTPRSGEGTVLRGSNLYSSGGSRKSQNLLFSGWVM
Computationally mapped potential isoform sequences
There are 4 potential isoforms mapped to this entry
Entry | Entry name | Gene name | Length | ||
---|---|---|---|---|---|
D6RIC3 | D6RIC3_HUMAN | NOP16 | 150 | ||
D6RC60 | D6RC60_HUMAN | NOP16 | 95 | ||
A0A087WU10 | A0A087WU10_HUMAN | NOP16 | 70 | ||
A0A0C4DGU5 | A0A0C4DGU5_HUMAN | NOP16 | 231 |
Sequence caution
Features
Showing features for compositional bias, sequence conflict, alternative sequence.
Type | ID | Position(s) | Description | |||
---|---|---|---|---|---|---|
Compositional bias | 1-27 | Basic residues | ||||
Sequence: MPKAKGKTRRQKFGYSVNRKRLNRNAR | ||||||
Sequence conflict | 32-33 | in Ref. 2; AAD34112 and 3; AAF29075 | ||||
Sequence: PR → RG | ||||||
Alternative sequence | VSP_045583 | 132-178 | in isoform 2 | |||
Sequence: AMARDEKNYYQDTPKQIRSKINVYKRFYPAEWQDFLDSLQKRKMEVE → SGKTSSILCRRGRWRWSDWFTSQLPQAEASPGPVKLEPGCKARRCCVAPEELARSHGIRRLHTRAHSPLWGRNCSQRLQFIFIWGFTEKPEPAVFRVGDVNIVCT | ||||||
Alternative sequence | VSP_057393 | 132-178 | in isoform 3 | |||
Sequence: AMARDEKNYYQDTPKQIRSKINVYKRFYPAEWQDFLDSLQKRKMEVE → QSGKTSSILCRRGRWRWSDWFTSQLPQAEASPGPVKLEPGCKARRCCVAPEELARSHGIRRLHTHVHTPRSGEGTVLRGSNLYSSGGSRKSQNLLFSGWVM | ||||||
Sequence conflict | 171 | In isoform Q9Y3C1-2; in Ref. 4; BAG62525 | ||||
Sequence: C → F | ||||||
Sequence conflict | 178 | in Ref. 5; CAG33450 | ||||
Sequence: E → D |
Keywords
- Coding sequence diversity
- Technical term
Sequence databases
Nucleotide Sequence | Protein Sequence | Molecule Type | Status | |
---|---|---|---|---|
AY561704 EMBL· GenBank· DDBJ | AAS66977.1 EMBL· GenBank· DDBJ | mRNA | ||
AF151875 EMBL· GenBank· DDBJ | AAD34112.1 EMBL· GenBank· DDBJ | mRNA | ||
AF161460 EMBL· GenBank· DDBJ | AAF29075.1 EMBL· GenBank· DDBJ | mRNA | ||
AK300883 EMBL· GenBank· DDBJ | BAG62525.1 EMBL· GenBank· DDBJ | mRNA | Frameshift | |
CR457169 EMBL· GenBank· DDBJ | CAG33450.1 EMBL· GenBank· DDBJ | mRNA | ||
AC138956 EMBL· GenBank· DDBJ | - | Genomic DNA | No translation available. | |
KF459629 EMBL· GenBank· DDBJ | - | Genomic DNA | No translation available. | |
CH471195 EMBL· GenBank· DDBJ | EAW85084.1 EMBL· GenBank· DDBJ | Genomic DNA | ||
CH471195 EMBL· GenBank· DDBJ | EAW85085.1 EMBL· GenBank· DDBJ | Genomic DNA | Frameshift | |
BC019331 EMBL· GenBank· DDBJ | AAH19331.1 EMBL· GenBank· DDBJ | mRNA | Frameshift | |
BC032424 EMBL· GenBank· DDBJ | AAH32424.1 EMBL· GenBank· DDBJ | mRNA | ||
BC040106 EMBL· GenBank· DDBJ | AAH40106.1 EMBL· GenBank· DDBJ | mRNA |