Q9XJ60 · MAD50_ORYSJ

Function

function

Probable transcription factor active in flowering time control. May control internode elongation and promote floral transition phase. May act upstream of the floral regulators MADS1, MADS14, MADS15 and MADS18 in the floral induction pathway.

Miscellaneous

Early flowering phenotype is observed in overexpressing plants.

GO annotations

all annotationsall molecular functionnucleotide bindingmolecular_functionnucleic acid bindingdna bindingchromatin bindingdna-binding transcription factor activityrna bindingcytoskeletal motor activitycatalytic activitynuclease activitysignaling receptor bindingstructural molecule activitytransporter activitybindingprotein bindingtranslation factor activity, rna bindinglipid bindingkinase activitytransferase activityhydrolase activityoxygen bindingenzyme regulator activitycarbohydrate bindingsignaling receptor activitytranslation regulator activitytranscription regulator activityother molecular functionall biological processcarbohydrate metabolic processgeneration of precursor metabolites and energynucleobase-containing compound metabolic processdna metabolic processtranslationlipid metabolic processtransportresponse to stresscell cyclecell communicationsignal transductioncell-cell signalingmulticellular organism developmentcircadian rhythmbiological_processmetabolic processcatabolic processbiosynthetic processresponse to light stimulusresponse to external stimulustropismresponse to biotic stimulusresponse to abiotic stimulusresponse to endogenous stimulusembryo developmentpost-embryonic developmentfruit ripeningabscissionpollinationflower developmentcellular processprogrammed cell deathphotosynthesiscellular component organizationcell growthprotein metabolic processcellular homeostasissecondary metabolic processreproductive processcell differentiationprotein modification processgrowthepigenetic regulation of gene expressionresponse to chemicalanatomical structure developmentregulation of molecular functionother biological processall cellular componentcellular_componentextracellular regioncell wallintracellular anatomical structurenucleusnuclear envelopenucleoplasmnucleoluscytoplasmmitochondrionlysosomeendosomevacuoleperoxisomeendoplasmic reticulumgolgi apparatuscytosolribosomecytoskeletonplasma membranechloroplastplastidthylakoidmembraneexternal encapsulating structureother cellular component
Cell color indicative of number of GO terms
AspectTerm
Cellular Componentnucleus
Molecular FunctionDNA-binding transcription factor activity, RNA polymerase II-specific
Molecular Functionprotein dimerization activity
Molecular FunctionRNA polymerase II cis-regulatory region sequence-specific DNA binding
Biological Processcell differentiation
Biological Processflower development
Biological Processpositive regulation of transcription by RNA polymerase II
Biological Processregulation of transcription by RNA polymerase II

Keywords

Enzyme and pathway databases

Names & Taxonomy

Protein names

  • Recommended name
    MADS-box transcription factor 50
  • Short names
    OsMADS50
  • Alternative names
    • Protein AGAMOUS-like 20
    • Protein SUPPRESSOR OF CONSTANS OVEREXPRESSION 1-like (OsSOC1)
    • RMADS208

Gene names

    • Name
      MADS50
    • Synonyms
      AGL20, SOC1
    • ORF names
      OJ1126B12.8
    • Ordered locus names
      Os03g0122600, LOC_Os03g03070

Organism names

  • Taxonomic identifier
  • Strain
    • cv. Nipponbare
  • Taxonomic lineage
    Eukaryota > Viridiplantae > Streptophyta > Embryophyta > Tracheophyta > Spermatophyta > Magnoliopsida > Liliopsida > Poales > Poaceae > BOP clade > Oryzoideae > Oryzeae > Oryzinae > Oryza > Oryza sativa

Accessions

  • Primary accession
    Q9XJ60
  • Secondary accessions
    • Q0DVM3
    • Q7XB97
    • Q8H8H3

Proteomes

Genome annotation databases

Subcellular Location

Keywords

Phenotypes & Variants

Disruption phenotype

Late-flowering phenotype and elongated internodes.

PTM/Processing

Features

Showing features for chain.

TypeIDPosition(s)Description
ChainPRO_00002299161-230MADS-box transcription factor 50

Proteomic databases

Expression

Tissue specificity

Expressed in mature leaves and at low levels in roots and young panicles.

Developmental stage

Low expression in the young panicle continues to decline as the organ mature.

Interaction

Protein-protein interaction databases

Structure

Family & Domains

Features

Showing features for domain, region.

TypeIDPosition(s)Description
Domain1-61MADS-box
Domain86-176K-box
Region209-230Disordered

Phylogenomic databases

Family and domain databases

Sequence & Isoform

Align isoforms (2)
  • Sequence status
    Complete

This entry describes 2 isoforms produced by Alternative splicing.

Q9XJ60-1

This isoform has been chosen as the canonical sequence. All positional information in this entry refers to it. This is also the sequence that appears in the downloadable versions of the entry.

  • Length
    230
  • Mass (Da)
    26,181
  • Last updated
    1999-11-01 v1
  • Checksum
    4DEE81FB6B2EDD42
MVRGKTQMKRIENPTSRQVTFSKRRNGLLKKAFELSVLCDAEVALIVFSPRGKLYEFASASTQKTIERYRTYTKENIGNKTVQQDIEQVKADADGLAKKLEALETYKRKLLGEKLDECSIEELHSLEVKLERSLISIRGRKTKLLEEQVAKLREKEMKLRKDNEELREKCKNQPPLSAPLTVRAEDENPDRNINTTNDNMDVETELFIGLPGRSRSSGGAAEDSQAMPHS

Q9XJ60-2

  • Name
    2
  • See also
    sequence in UniParc or sequence clusters in UniRef
  • Differences from canonical
    • 1-79: Missing
    • 80-87: KTVQQDIE → MCIVFEIM

Features

Showing features for alternative sequence.

TypeIDPosition(s)Description
Alternative sequenceVSP_0177871-79in isoform 2
Alternative sequenceVSP_01778880-87in isoform 2

Keywords

Sequence databases

Nucleotide SequenceProtein SequenceMolecule TypeStatus
AB003328
EMBL· GenBank· DDBJ
BAA81886.1
EMBL· GenBank· DDBJ
mRNA
AY332476
EMBL· GenBank· DDBJ
AAQ01162.1
EMBL· GenBank· DDBJ
mRNA
AY551914
EMBL· GenBank· DDBJ
AAS59820.1
EMBL· GenBank· DDBJ
mRNA
AC098695
EMBL· GenBank· DDBJ
AAN74833.1
EMBL· GenBank· DDBJ
Genomic DNA
AP008209
EMBL· GenBank· DDBJ
BAF10715.1
EMBL· GenBank· DDBJ
Genomic DNA
AP014959
EMBL· GenBank· DDBJ
BAS82045.1
EMBL· GenBank· DDBJ
Genomic DNA

Genome annotation databases

Similar Proteins

Disclaimer

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