Q9XI07 · SWI3C_ARATH

Function

function

Component of a multiprotein complex equivalent of the SWI/SNF complex, an ATP-dependent chromatin-remodeling complex, which is required for the positive and negative regulation of gene expression of a large number of genes. It changes chromatin structure by altering DNA-histone contacts within a nucleosome, leading eventually to a change in nucleosome position, thus facilitating or repressing binding of gene-specific transcription factors.

Features

Showing features for binding site.

1807100200300400500600700800
TypeIDPosition(s)Description
Binding site345Zn2+ (UniProtKB | ChEBI)
Binding site348Zn2+ (UniProtKB | ChEBI)
Binding site368Zn2+ (UniProtKB | ChEBI)
Binding site371Zn2+ (UniProtKB | ChEBI)

GO annotations

all annotationsall molecular functionnucleotide bindingmolecular_functionnucleic acid bindingdna bindingchromatin bindingdna-binding transcription factor activityrna bindingcytoskeletal motor activitycatalytic activitynuclease activitysignaling receptor bindingstructural molecule activitytransporter activitybindingprotein bindingtranslation factor activity, rna bindinglipid bindingkinase activitytransferase activityhydrolase activityoxygen bindingenzyme regulator activitycarbohydrate bindingsignaling receptor activitytranslation regulator activitytranscription regulator activityother molecular functionall biological processcarbohydrate metabolic processgeneration of precursor metabolites and energynucleobase-containing compound metabolic processdna metabolic processtranslationlipid metabolic processtransportresponse to stresscell cyclecell communicationsignal transductioncell-cell signalingmulticellular organism developmentcircadian rhythmbiological_processmetabolic processcatabolic processbiosynthetic processresponse to light stimulusresponse to external stimulustropismresponse to biotic stimulusresponse to abiotic stimulusresponse to endogenous stimulusembryo developmentpost-embryonic developmentfruit ripeningabscissionpollinationflower developmentcellular processprogrammed cell deathphotosynthesiscellular component organizationcell growthprotein metabolic processcellular homeostasissecondary metabolic processreproductive processcell differentiationprotein modification processgrowthepigenetic regulation of gene expressionresponse to chemicalanatomical structure developmentregulation of molecular functionother biological processall cellular componentcellular_componentextracellular regioncell wallintracellular anatomical structurenucleusnuclear envelopenucleoplasmnucleoluscytoplasmmitochondrionlysosomeendosomevacuoleperoxisomeendoplasmic reticulumgolgi apparatuscytosolribosomecytoskeletonplasma membranechloroplastplastidthylakoidmembraneexternal encapsulating structureother cellular component
Cell color indicative of number of GO terms
AspectTerm
Cellular ComponentSWI/SNF complex
Molecular FunctionDNA binding
Molecular Functionzinc ion binding
Biological Processchromatin remodeling

Keywords

Names & Taxonomy

Protein names

  • Recommended name
    SWI/SNF complex subunit SWI3C
  • Short names
    AtSWI3C
  • Alternative names
    • Transcription regulatory protein SWI3C

Gene names

    • Name
      SWI3C
    • Synonyms
      CHB4
    • ORF names
      F8K7.13
    • Ordered locus names
      At1g21700

Organism names

  • Taxonomic identifier
  • Strain
    • cv. Columbia
  • Taxonomic lineage
    Eukaryota > Viridiplantae > Streptophyta > Embryophyta > Tracheophyta > Spermatophyta > Magnoliopsida > eudicotyledons > Gunneridae > Pentapetalae > rosids > malvids > Brassicales > Brassicaceae > Camelineae > Arabidopsis

Accessions

  • Primary accession
    Q9XI07

Proteomes

Organism-specific databases

Genome annotation databases

Subcellular Location

Keywords

Phenotypes & Variants

Disruption phenotype

Plants are viable but have alterations in leaf, root and flower development, and are early flowering.

Variants

We now provide the "Disease & Variants" viewer in its own tab.

The viewer provides 50 variants from UniProt as well as other sources including ClinVar and dbSNP.

Go to variant viewer

PTM/Processing

Features

Showing features for chain.

TypeIDPosition(s)Description
ChainPRO_00003445291-807SWI/SNF complex subunit SWI3C

Proteomic databases

PTM databases

Expression

Tissue specificity

Expressed in roots, stems, leaves, flowers and siliques.

Gene expression databases

Interaction

Subunit

Heterodimer. Interacts with SWI3A, SWI3B and BRM, but not with BSH. Interacts with MORC6 and SUVH9 (PubMed:27171427).

Binary interactions

TypeEntry 1Entry 2Number of experimentsIntAct
BINARY Q9XI07SWI3B Q84JG24EBI-1102300, EBI-1102271

Complex viewer

View interactors in UniProtKB
View CPX-7723 in Complex Portal

Protein-protein interaction databases

Family & Domains

Features

Showing features for region, compositional bias, domain, zinc finger, coiled coil.

Type
IDPosition(s)Description
Region1-74Disordered
Compositional bias30-53Acidic residues
Domain176-274SWIRM
Zinc finger340-394ZZ-type; degenerate
Domain398-449SANT
Compositional bias458-484Polar residues
Region458-487Disordered
Region549-571Disordered
Coiled coil598-656
Region692-713Disordered
Region721-740Disordered
Region781-807Disordered

Keywords

Phylogenomic databases

Family and domain databases

Sequence

  • Sequence status
    Complete
  • Length
    807
  • Mass (Da)
    88,250
  • Last updated
    1999-11-01 v1
  • Checksum
    DAB17C104E4B287F
MPASEDRRGKWKRKKRGGLSAARKPKQEEEDMEEEDEENNNNNNEEMDDVENADELQQNGGATPDPGLGIGEVVEDSGSRISDFPAVVKRVVIRPHASVMAVVAAERAGLIGETRGQGSLPALENISFGQLQALSTVPADSLDLERSDGSSSAYVISPPPIMDGEGVVKRFGDLVHVLPMHSDWFAPNTVDRLERQVVPQFFSGKSPNHTPESYMEFRNAIVSKYVENPEKTLTISDCQGLVDGVDIEDFARVFRFLDHWGIINYCATAQSHPGPLRDVSDVREDTNGEVNVPSAALTSIDSLIKFDKPNCRHKGGEVYSSLPSLDGDSPDLDIRIREHLCDSHCNHCSRPLPTVYFQSQKKGDILLCCDCFHHGRFVVGHSCLDFVRVDPMKFYGDQDGDNWTDQETLLLLEAVELYNENWVQIADHVGSKSKAQCILHFLRLPVEDGLLDNVEVSGVTNTENPTNGYDHKGTDSNGDLPGYSEQGSDTEIKLPFVKSPNPVMALVAFLASAVGPRVAASCAHESLSVLSEDDRMKSEGMQGKEASLLDGENQQQDGAHKTSSQNGAEAQTPLPQDKVMAAFRAGLSAAATKAKLFADHEEREIQRLSANIVNHQLKRMELKLKQFAEIETLLMKECEQVEKTRQRFSAERARMLSARFGSPGGISPQTNNLQGMSLSTGGNNINSLMHQQHQQQQASATSQPSIIPGFSNNPQVQAQMHFMARQQQQQQQQQQQQQQAFSFGPRLPLNAIQTNAGSTASPNVMFGNNQLNNPAAAGAASINQPSFSHPMVRSSTGSGSGSGLGLN

Features

Showing features for compositional bias.

TypeIDPosition(s)Description
Compositional bias30-53Acidic residues
Compositional bias458-484Polar residues

Keywords

Sequence databases

Nucleotide SequenceProtein SequenceMolecule TypeStatus
AC007727
EMBL· GenBank· DDBJ
AAD41423.1
EMBL· GenBank· DDBJ
Genomic DNA
CP002684
EMBL· GenBank· DDBJ
AEE30144.1
EMBL· GenBank· DDBJ
Genomic DNA
AY091026
EMBL· GenBank· DDBJ
AAM13847.1
EMBL· GenBank· DDBJ
mRNA
AY117245
EMBL· GenBank· DDBJ
AAM51320.1
EMBL· GenBank· DDBJ
mRNA

Genome annotation databases

Similar Proteins

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