Q9SZJ6 · AGL21_ARATH
- ProteinAgamous-like MADS-box protein AGL21
- GeneAGL21
- StatusUniProtKB reviewed (Swiss-Prot)
- Amino acids228 (go to sequence)
- Protein existenceEvidence at protein level
- Annotation score5/5
Function
function
Probable transcription factor.
GO annotations
all annotations | all molecular function | nucleotide binding | molecular_function | nucleic acid binding | dna binding | chromatin binding | dna-binding transcription factor activity | rna binding | cytoskeletal motor activity | catalytic activity | nuclease activity | signaling receptor binding | structural molecule activity | transporter activity | binding | protein binding | translation factor activity, rna binding | lipid binding | kinase activity | transferase activity | hydrolase activity | oxygen binding | enzyme regulator activity | carbohydrate binding | signaling receptor activity | translation regulator activity | transcription regulator activity | other molecular function | all biological process | carbohydrate metabolic process | generation of precursor metabolites and energy | nucleobase-containing compound metabolic process | dna metabolic process | translation | lipid metabolic process | transport | response to stress | cell cycle | cell communication | signal transduction | cell-cell signaling | multicellular organism development | circadian rhythm | biological_process | metabolic process | catabolic process | biosynthetic process | response to light stimulus | response to external stimulus | tropism | response to biotic stimulus | response to abiotic stimulus | response to endogenous stimulus | embryo development | post-embryonic development | fruit ripening | abscission | pollination | flower development | cellular process | programmed cell death | photosynthesis | cellular component organization | cell growth | protein metabolic process | cellular homeostasis | secondary metabolic process | reproductive process | cell differentiation | protein modification process | growth | epigenetic regulation of gene expression | response to chemical | anatomical structure development | regulation of molecular function | other biological process | all cellular component | cellular_component | extracellular region | cell wall | intracellular anatomical structure | nucleus | nuclear envelope | nucleoplasm | nucleolus | cytoplasm | mitochondrion | lysosome | endosome | vacuole | peroxisome | endoplasmic reticulum | golgi apparatus | cytosol | ribosome | cytoskeleton | plasma membrane | chloroplast | plastid | thylakoid | membrane | external encapsulating structure | other cellular component | |||
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Aspect | Term | |
---|---|---|
Cellular Component | nucleus | |
Molecular Function | DNA-binding transcription factor activity | |
Molecular Function | protein dimerization activity | |
Molecular Function | RNA polymerase II transcription regulatory region sequence-specific DNA binding | |
Biological Process | positive regulation of transcription by RNA polymerase II |
Keywords
- Molecular function
- Biological process
Names & Taxonomy
Protein names
- Recommended nameAgamous-like MADS-box protein AGL21
Gene names
Organism names
- Strain
- Taxonomic lineageEukaryota > Viridiplantae > Streptophyta > Embryophyta > Tracheophyta > Spermatophyta > Magnoliopsida > eudicotyledons > Gunneridae > Pentapetalae > rosids > malvids > Brassicales > Brassicaceae > Camelineae > Arabidopsis
Accessions
- Primary accessionQ9SZJ6
- Secondary accessions
Proteomes
Organism-specific databases
Genome annotation databases
Subcellular Location
PTM/Processing
Features
Showing features for chain.
Type | ID | Position(s) | Description | |||
---|---|---|---|---|---|---|
Chain | PRO_0000199479 | 1-228 | Agamous-like MADS-box protein AGL21 | |||
Sequence: MGRGKIVIQRIDDSTSRQVTFSKRRKGLIKKAKELAILCDAEVGLIIFSSTGKLYDFASSSMKSVIDRYNKSKIEQQQLLNPASEVKFWQREAAVLRQELHALQENHRQMMGEQLNGLSVNELNSLENQIEISLRGIRMRKEQLLTQEIQELSQKRNLIHQENLDLSRKVQRIHQENVELYKKAYMANTNGFTHREVAVADDESHTQIRLQLSQPEHSDYDTPPRANE |
Proteomic databases
Expression
Tissue specificity
Specifically expressed in root.
Developmental stage
Primarily expressed during lateral root formation and embryogenesis.
Gene expression databases
Interaction
Subunit
Binary interactions
Type | Entry 1 | Entry 2 | Number of experiments | Intact | |
---|---|---|---|---|---|
BINARY | Q9SZJ6 | AGL1 P29381 | 4 | EBI-621986, EBI-592304 | |
BINARY | Q9SZJ6 | AGL12 Q38841 | 4 | EBI-621986, EBI-621976 | |
BINARY | Q9SZJ6 | AGL15 Q38847 | 5 | EBI-621986, EBI-622076 | |
BINARY | Q9SZJ6 | AGL16 A2RVQ5 | 5 | EBI-621986, EBI-621930 | |
BINARY | Q9SZJ6 | AGL17 Q38840 | 4 | EBI-621986, EBI-622087 | |
BINARY | Q9SZJ6 | AGL24 O82794 | 4 | EBI-621986, EBI-592083 | |
BINARY | Q9SZJ6 | AGL42 Q9FIS1 | 4 | EBI-621986, EBI-622017 | |
BINARY | Q9SZJ6 | AGL5 P29385 | 4 | EBI-621986, EBI-621949 | |
BINARY | Q9SZJ6 | ANR1 Q9SI38 | 4 | EBI-621986, EBI-622096 | |
BINARY | Q9SZJ6 | AP1 P35631 | 4 | EBI-621986, EBI-592003 | |
BINARY | Q9SZJ6 | MAK3 O80438 | 3 | EBI-621986, EBI-15205450 | |
BINARY | Q9SZJ6 | SVP Q9FVC1 | 5 | EBI-621986, EBI-592058 | |
BINARY | Q9SZJ6 | TCP4 Q8LPR5 | 3 | EBI-621986, EBI-15192325 | |
BINARY | Q9SZJ6 | WRKY47 Q9ZSI7 | 3 | EBI-621986, EBI-2367993 |
Protein-protein interaction databases
Structure
Family & Domains
Features
Showing features for domain.
Type | ID | Position(s) | Description | |||
---|---|---|---|---|---|---|
Domain | 3-57 | MADS-box | ||||
Sequence: RGKIVIQRIDDSTSRQVTFSKRRKGLIKKAKELAILCDAEVGLIIFSSTGKLYDF | ||||||
Domain | 86-176 | K-box | ||||
Sequence: VKFWQREAAVLRQELHALQENHRQMMGEQLNGLSVNELNSLENQIEISLRGIRMRKEQLLTQEIQELSQKRNLIHQENLDLSRKVQRIHQE |
Phylogenomic databases
Family and domain databases
Sequence
- Sequence statusComplete
- Length228
- Mass (Da)26,411
- Last updated2000-05-01 v1
- Checksum87077BFE6CC4F7A6
Computationally mapped potential isoform sequences
There are 3 potential isoforms mapped to this entry
Entry | Entry name | Gene name | Length | ||
---|---|---|---|---|---|
A0A1P8B618 | A0A1P8B618_ARATH | AGL21 | 214 | ||
A0A1P8B622 | A0A1P8B622_ARATH | AGL21 | 175 | ||
A0A178UVY5 | A0A178UVY5_ARATH | AGL21 | 167 |
Keywords
- Technical term
Sequence databases
Nucleotide Sequence | Protein Sequence | Molecule Type | Status | |
---|---|---|---|---|
AF336979 EMBL· GenBank· DDBJ | AAL73213.1 EMBL· GenBank· DDBJ | mRNA | ||
AL035538 EMBL· GenBank· DDBJ | CAB37534.1 EMBL· GenBank· DDBJ | Genomic DNA | ||
AL161592 EMBL· GenBank· DDBJ | CAB80459.1 EMBL· GenBank· DDBJ | Genomic DNA | ||
CP002687 EMBL· GenBank· DDBJ | AEE86856.1 EMBL· GenBank· DDBJ | Genomic DNA |