Sequence and analysis of chromosome 4 of the plant Arabidopsis thaliana.Mayer K.F.X., Schueller C., Wambutt R., Murphy G., Volckaert G., Pohl T., Duesterhoeft A., Stiekema W., Entian K.-D.[...], McCombie W.R.View abstractCited forNUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]Straincv. ColumbiaCategoriesSequencesSourceUniProtKB reviewed (Swiss-Prot)PubMedEurope PMCNature 402:769-777 (1999)Cited in99+99+Mapped to3
Araport11: a complete reannotation of the Arabidopsis thaliana reference genome.Cheng C.Y., Krishnakumar V., Chan A.P., Thibaud-Nissen F., Schobel S., Town C.D.View abstractCited forGENOME REANNOTATIONStraincv. ColumbiaCategoriesSequencesSourceUniProtKB reviewed (Swiss-Prot)PubMedEurope PMCPlant J. 89:789-804 (2017)Cited in99+99+
Empirical analysis of transcriptional activity in the Arabidopsis genome.Yamada K., Lim J., Dale J.M., Chen H., Shinn P., Palm C.J., Southwick A.M., Wu H.C., Kim C.J.[...], Ecker J.R.View abstractCited forNUCLEOTIDE SEQUENCE [LARGE SCALE MRNA] (ISOFORM 2)Straincv. ColumbiaCategoriesSequencesSourceUniProtKB reviewed (Swiss-Prot)PubMedEurope PMCScience 302:842-846 (2003)Cited in99+Mapped to2
Analysis of multiple occurrences of alternative splicing events in Arabidopsis thaliana using novel sequenced full-length cDNAs.Iida K., Fukami-Kobayashi K., Toyoda A., Sakaki Y., Kobayashi M., Seki M., Shinozaki K.View abstractCited forNUCLEOTIDE SEQUENCE [LARGE SCALE MRNA] (ISOFORM 1)Straincv. ColumbiaTissueRosette leafCategoriesSequencesSourceUniProtKB reviewed (Swiss-Prot)PubMedEurope PMCDNA Res. 16:155-164 (2009)Cited in99+99+
Signal peptide selection derived cDNAs from Arabidopsis thaliana leaves and guard cells.Stracke R., Palme K.Cited forNUCLEOTIDE SEQUENCE [LARGE SCALE MRNA] OF 1-175CategoriesSequencesSourceUniProtKB reviewed (Swiss-Prot)Submission Submitted to EMBL/GenBank/DDBJ databases (AUG-1998)Cited in60
Large-scale analysis of in vivo phosphorylated membrane proteins by immobilized metal ion affinity chromatography and mass spectrometry.Nuehse T.S., Stensballe A., Jensen O.N., Peck S.C.View abstractCited forIDENTIFICATION BY MASS SPECTROMETRY [LARGE SCALE ANALYSIS]Straincv. La-0CategoriesSequencesSourceUniProtKB reviewed (Swiss-Prot)PubMedEurope PMCMol. Cell. Proteomics 2:1234-1243 (2003)Cited in7143Mapped to99+
Oxidation of monolignols by members of the berberine bridge enzyme family suggests a role in plant cell wall metabolism.Daniel B., Pavkov-Keller T., Steiner B., Dordic A., Gutmann A., Nidetzky B., Sensen C.W., van der Graaff E., Wallner S.[...], Macheroux P.View abstractCited forGENE FAMILY, NOMENCLATURECategoriesNamesSourceUniProtKB reviewed (Swiss-Prot)PubMedEurope PMCJ. Biol. Chem. 290:18770-18781 (2015)Cited in27Mapped to2
Molecular dynamics simulations and kinetic measurements provide insights into the structural requirements of substrate size-dependent specificity of oligogalacturonide oxidase 1 (OGOX1).Frezzini M., Scortica A., Capone M., Narzi D., Benedetti M., Angelucci F., Mattei B., Guidoni L.View abstractSourceTAIR: AT4G20830PubMedEurope PMCPlant Physiol Biochem 194:315-325 (2023)Mapped to1
A molecular dynamics-guided mutagenesis identifies two aspartic acid residues involved in the pH-dependent activity of OG-OXIDASE 1.Scortica A., Capone M., Narzi D., Frezzini M., Scafati V., Giovannoni M., Angelucci F., Guidoni L., Mattei B., Benedetti M.View abstractCategoriesFunction, Phenotypes & VariantsSourceTAIR: AT4G20830PubMedEurope PMCPlant Physiol Biochem 169:171-182 (2021)Mapped to1
An Arabidopsis berberine bridge enzyme-like protein specifically oxidizes cellulose oligomers and plays a role in immunity.Locci F., Benedetti M., Pontiggia D., Citterico M., Caprari C., Mattei B., Cervone F., De Lorenzo G.View abstractCategoriesFunctionSourceTAIR: AT4G20830PubMedEurope PMCPlant J 98:540-554 (2019)Mapped to5
COI1-dependent jasmonate signalling affects growth, metabolite production and cell wall protein composition in arabidopsis.Bomer M., O'Brien J.A., Perez-Salamo I., Krasauskas J., Finch P., Briones A., Daudi A., Souda P., Tsui T.L.[...], Devoto A.View abstractCategoriesFunctionSourceTAIR: AT4G20830PubMedEurope PMCAnn Bot 122:1117-1129 (2018)Mapped to5
Four Arabidopsis berberine bridge enzyme-like proteins are specific oxidases that inactivate the elicitor-active oligogalacturonides.Benedetti M., Verrascina I., Pontiggia D., Locci F., Mattei B., De Lorenzo G., Cervone F.View abstractCategoriesFunctionSourceTAIR: AT4G20830PubMedEurope PMCPlant J 94:260-273 (2018)Mapped to4
Structure of a berberine bridge enzyme-like enzyme with an active site specific to the plant family brassicaceae.Daniel B., Wallner S., Steiner B., Oberdorfer G., Kumar P., van der Graaff E., Roitsch T., Sensen C.W., Gruber K., Macheroux P.View abstractCategoriesStructureSourceTAIR: AT4G20830PubMedEurope PMCPLoS ONE 11:E0156892-E0156892 (2016)Cited in1Mapped to31
Endogenous Arabidopsis messenger RNAs transported to distant tissues.Thieme C.J., Rojas-Triana M., Stecyk E., Schudoma C., Zhang W., Yang L., Minambres M., Walther D., Schulze W.X.[...], Kragler F.View abstractCategoriesFunction, ExpressionSourceTAIR: AT4G20830PubMedEurope PMCNat. Plants 1:15025-15025 (2015)Cited in1Mapped to99+
Functional compensation of primary and secondary metabolites by duplicate genes in Arabidopsis thaliana.Hanada K., Sawada Y., Kuromori T., Klausnitzer R., Saito K., Toyoda T., Shinozaki K., Li W.H., Hirai M.Y.View abstractCategoriesFunctionSourceTAIR: AT4G20830PubMedEurope PMCMol Biol Evol 28:377-382 (2011)Mapped to99+
Transcriptome analyses show changes in gene expression to accompany pollen germination and tube growth in Arabidopsis.Wang Y., Zhang W.Z., Song L.F., Zou J.J., Su Z., Wu W.H.View abstractCategoriesNames, ExpressionSourceTAIR: AT4G20830PubMedEurope PMCPlant Physiol. 148:1201-1211 (2008)Cited in3Mapped to99+
Global analysis of Arabidopsis gene expression uncovers a complex array of changes impacting pathogen response and cell cycle during geminivirus infection.Ascencio-Ibanez J.T., Sozzani R., Lee T.J., Chu T.M., Wolfinger R.D., Cella R., Hanley-Bowdoin L.View abstractCategoriesExpressionSourceTAIR: AT4G20830PubMedEurope PMCPlant Physiol 148:436-454 (2008)Mapped to99+
Hydroponic isotope labelling of entire plants (HILEP) for quantitative plant proteomics; an oxidative stress case study.Bindschedler L.V., Palmblad M., Cramer R.View abstractCategoriesPTM / Processing, Subcellular LocationSourceTAIR: AT4G20830PubMedEurope PMCPhytochemistry 69:1962-1972 (2008)Mapped to99+
A high content in lipid-modified peripheral proteins and integral receptor kinases features in the arabidopsis plasma membrane proteome.Marmagne A., Ferro M., Meinnel T., Bruley C., Kuhn L., Garin J., Barbier-Brygoo H., Ephritikhine G.View abstractCategoriesPTM / Processing, Subcellular LocationSourceTAIR: AT4G20830PubMedEurope PMCMol. Cell. Proteomics 6:1980-1996 (2007)Cited in27Mapped to99+
A sub-proteome of Arabidopsis thaliana mature stems trapped on Concanavalin A is enriched in cell wall glycoside hydrolases.Minic Z., Jamet E., Negroni L., Arsene der Garabedian P., Zivy M., Jouanin L.View abstractCategoriesSubcellular LocationSourceTAIR: AT4G20830PubMedEurope PMCJ Exp Bot 58:2503-2512 (2007)Mapped to99+
Quantitative phosphoproteomics of early elicitor signaling in Arabidopsis.Benschop J.J., Mohammed S., O'Flaherty M., Heck A.J., Slijper M., Menke F.L.View abstractCategoriesPTM / ProcessingSourceTAIR: AT4G20830PubMedEurope PMCMol Cell Proteomics 6:1198-1214 (2007)Mapped to99+
Mapping the Arabidopsis organelle proteome.Dunkley T.P., Hester S., Shadforth I.P., Runions J., Weimar T., Hanton S.L., Griffin J.L., Bessant C., Brandizzi F.[...], Lilley K.S.View abstractCategoriesSubcellular LocationSourceTAIR: AT4G20830PubMedEurope PMCProc Natl Acad Sci U S A 103:6518-6523 (2006)Mapped to99+
Arabidopsis cell wall proteome defined using multidimensional protein identification technology.Bayer E.M., Bottrill A.R., Walshaw J., Vigouroux M., Naldrett M.J., Thomas C.L., Maule A.J.View abstractCategoriesSubcellular LocationSourceTAIR: AT4G20830PubMedEurope PMCProteomics 6:301-311 (2006)Mapped to99+
Detoxification and transcriptome response in Arabidopsis seedlings exposed to the allelochemical benzoxazolin-2(3H)-one.Baerson S.R., Sanchez-Moreiras A., Pedrol-Bonjoch N., Schulz M., Kagan I.A., Agarwal A.K., Reigosa M.J., Duke S.O.View abstractCategoriesExpressionSourceTAIR: AT4G20830PubMedEurope PMCJ Biol Chem 280:21867-21881 (2005)Mapped to99+
Bicistronic and fused monocistronic transcripts are derived from adjacent loci in the Arabidopsis genome.Thimmapuram J., Duan H., Liu L., Schuler M.A.View abstractCategoriesSequencesSourceTAIR: AT4G20830PubMedEurope PMCRNA 11:128-138 (2005)Mapped to99+