Q9STS6 · LBD27_ARATH
- ProteinLOB domain-containing protein 27
- GeneLBD27
- StatusUniProtKB reviewed (Swiss-Prot)
- Amino acids328 (go to sequence)
- Protein existenceEvidence at protein level
- Annotation score3/5
Variants
Variant ID(s) | Position(s) | Change | Description | Clinical significance | Provenance | ||
---|---|---|---|---|---|---|---|
ENSVATH02465472 | 12 | Q>L | 1000Genomes | ||||
Consequence: missense Predictions: - SIFT: tolerated - low confidence (1) Somatic: No Accession: 3:g.17660973T>A Codon: CAG/CTG Consequence type: missense Cytogenetic band: Genomic location: 3:g.17660973T>A Locations: - p.Gln12Leu (EnsemblPlants:AT3G47870.1) - c.35A>T (EnsemblPlants:AT3G47870.1) Source type: large scale study Cross-references: | |||||||
ENSVATH14396915 | 26 | Y>D | 1000Genomes | ||||
Consequence: missense Predictions: - SIFT: deleterious - low confidence (0.05) Somatic: No Accession: 3:g.17660932A>C Codon: TAC/GAC Consequence type: missense Cytogenetic band: Genomic location: 3:g.17660932A>C Locations: - p.Tyr26Asp (EnsemblPlants:AT3G47870.1) - c.76T>G (EnsemblPlants:AT3G47870.1) Source type: large scale study Cross-references: | |||||||
ENSVATH14396904 | 26 | Y>F | 1000Genomes | ||||
Consequence: missense Predictions: - SIFT: tolerated - low confidence (1) Somatic: No Accession: 3:g.17660931T>A Codon: TAC/TTC Consequence type: missense Cytogenetic band: Genomic location: 3:g.17660931T>A Locations: - p.Tyr26Phe (EnsemblPlants:AT3G47870.1) - c.77A>T (EnsemblPlants:AT3G47870.1) Source type: large scale study Cross-references: | |||||||
ENSVATH12623158 | 34 | S>R | 1000Genomes | ||||
Consequence: missense Predictions: - SIFT: deleterious (0.01) Somatic: No Accession: 3:g.17660906A>C Codon: AGT/AGG Consequence type: missense Cytogenetic band: Genomic location: 3:g.17660906A>C Locations: - p.Ser34Arg (EnsemblPlants:AT3G47870.1) - c.102T>G (EnsemblPlants:AT3G47870.1) Source type: large scale study Cross-references: | |||||||
ENSVATH14396902 | 36 | A>G | 1000Genomes | ||||
Consequence: missense Predictions: - SIFT: deleterious (0) Somatic: No Accession: 3:g.17660901G>C Codon: GCT/GGT Consequence type: missense Cytogenetic band: Genomic location: 3:g.17660901G>C Locations: - p.Ala36Gly (EnsemblPlants:AT3G47870.1) - c.107C>G (EnsemblPlants:AT3G47870.1) Source type: large scale study Cross-references: | |||||||
ENSVATH14396898 | 55 | P>A | 1000Genomes | ||||
Consequence: missense Predictions: - SIFT: deleterious (0) Somatic: No Accession: 3:g.17660845G>C Codon: CCT/GCT Consequence type: missense Cytogenetic band: Genomic location: 3:g.17660845G>C Locations: - p.Pro55Ala (EnsemblPlants:AT3G47870.1) - c.163C>G (EnsemblPlants:AT3G47870.1) Source type: large scale study Cross-references: | |||||||
ENSVATH14396897 | 62 | P>L | 1000Genomes | ||||
Consequence: missense Predictions: - SIFT: deleterious (0.01) Somatic: No Accession: 3:g.17660823G>A Codon: CCG/CTG Consequence type: missense Cytogenetic band: Genomic location: 3:g.17660823G>A Locations: - p.Pro62Leu (EnsemblPlants:AT3G47870.1) - c.185C>T (EnsemblPlants:AT3G47870.1) Source type: large scale study Cross-references: | |||||||
tmp_3_17660820_T_C | 63 | K>R | 1000Genomes | ||||
Consequence: missense Predictions: - SIFT: tolerated (0.11) Somatic: No Accession: 3:g.17660820T>C Codon: AAA/AGA Consequence type: missense Cytogenetic band: Genomic location: 3:g.17660820T>C Locations: - p.Lys63Arg (EnsemblPlants:AT3G47870.1) - c.188A>G (EnsemblPlants:AT3G47870.1) Source type: large scale study Cross-references: | |||||||
tmp_3_17660691_G_C | 106 | S>C | 1000Genomes | ||||
Consequence: missense Predictions: - SIFT: tolerated (0.13) Somatic: No Accession: 3:g.17660691G>C Codon: TCT/TGT Consequence type: missense Cytogenetic band: Genomic location: 3:g.17660691G>C Locations: - p.Ser106Cys (EnsemblPlants:AT3G47870.1) - c.317C>G (EnsemblPlants:AT3G47870.1) Source type: large scale study Cross-references: | |||||||
ENSVATH06264254 | 120 | Y>C | 1000Genomes | ||||
Consequence: missense Predictions: - SIFT: deleterious (0.01) Somatic: No Accession: 3:g.17660649T>C Codon: TAC/TGC Consequence type: missense Cytogenetic band: Genomic location: 3:g.17660649T>C Locations: - p.Tyr120Cys (EnsemblPlants:AT3G47870.1) - c.359A>G (EnsemblPlants:AT3G47870.1) Source type: large scale study Cross-references: | |||||||
tmp_3_17660640_C_A | 123 | W>L | 1000Genomes | ||||
Consequence: missense Predictions: - SIFT: tolerated (0.78) Somatic: No Accession: 3:g.17660640C>A Codon: TGG/TTG Consequence type: missense Cytogenetic band: Genomic location: 3:g.17660640C>A Locations: - p.Trp123Leu (EnsemblPlants:AT3G47870.1) - c.368G>T (EnsemblPlants:AT3G47870.1) Source type: large scale study Cross-references: | |||||||
ENSVATH14396896 | 124 | F>L | 1000Genomes | ||||
Consequence: missense Predictions: - SIFT: tolerated (1) Somatic: No Accession: 3:g.17660638A>G Codon: TTT/CTT Consequence type: missense Cytogenetic band: Genomic location: 3:g.17660638A>G Locations: - p.Phe124Leu (EnsemblPlants:AT3G47870.1) - c.370T>C (EnsemblPlants:AT3G47870.1) Source type: large scale study Cross-references: | |||||||
ENSVATH06264253 | 124 | F>S | 1000Genomes | ||||
Consequence: missense Predictions: - SIFT: tolerated (0.16) Somatic: No Accession: 3:g.17660637A>G Codon: TTT/TCT Consequence type: missense Cytogenetic band: Genomic location: 3:g.17660637A>G Locations: - p.Phe124Ser (EnsemblPlants:AT3G47870.1) - c.371T>C (EnsemblPlants:AT3G47870.1) Source type: large scale study Cross-references: | |||||||
ENSVATH06264252 | 125 | A>S | 1000Genomes | ||||
Consequence: missense Predictions: - SIFT: tolerated (0.09) Somatic: No Accession: 3:g.17660635C>A Codon: GCT/TCT Consequence type: missense Cytogenetic band: Genomic location: 3:g.17660635C>A Locations: - p.Ala125Ser (EnsemblPlants:AT3G47870.1) - c.373G>T (EnsemblPlants:AT3G47870.1) Source type: large scale study Cross-references: | |||||||
tmp_3_17660599_G_T | 137 | Q>K | 1000Genomes | ||||
Consequence: missense Predictions: - SIFT: tolerated (0.35) Somatic: No Accession: 3:g.17660599G>T Codon: CAA/AAA Consequence type: missense Cytogenetic band: Genomic location: 3:g.17660599G>T Locations: - p.Gln137Lys (EnsemblPlants:AT3G47870.1) - c.409C>A (EnsemblPlants:AT3G47870.1) Source type: large scale study Cross-references: | |||||||
ENSVATH06264251 | 140 | R>G | 1000Genomes | ||||
Consequence: missense Predictions: - SIFT: deleterious (0) Somatic: No Accession: 3:g.17660590G>C Codon: CGC/GGC Consequence type: missense Cytogenetic band: Genomic location: 3:g.17660590G>C Locations: - p.Arg140Gly (EnsemblPlants:AT3G47870.1) - c.418C>G (EnsemblPlants:AT3G47870.1) Source type: large scale study Cross-references: | |||||||
tmp_3_17660581_G_A | 143 | P>S | 1000Genomes | ||||
Consequence: missense Predictions: - SIFT: tolerated (0.8) Somatic: No Accession: 3:g.17660581G>A Codon: CCA/TCA Consequence type: missense Cytogenetic band: Genomic location: 3:g.17660581G>A Locations: - p.Pro143Ser (EnsemblPlants:AT3G47870.1) - c.427C>T (EnsemblPlants:AT3G47870.1) Source type: large scale study Cross-references: | |||||||
tmp_3_17660575_T_G | 145 | N>H | 1000Genomes | ||||
Consequence: missense Predictions: - SIFT: tolerated (0.22) Somatic: No Accession: 3:g.17660575T>G Codon: AAC/CAC Consequence type: missense Cytogenetic band: Genomic location: 3:g.17660575T>G Locations: - p.Asn145His (EnsemblPlants:AT3G47870.1) - c.433A>C (EnsemblPlants:AT3G47870.1) Source type: large scale study Cross-references: | |||||||
ENSVATH02465470 | 155 | H>P | 1000Genomes | ||||
Consequence: missense Predictions: - SIFT: deleterious (0.01) Somatic: No Accession: 3:g.17660544T>G Codon: CAT/CCT Consequence type: missense Cytogenetic band: Genomic location: 3:g.17660544T>G Locations: - p.His155Pro (EnsemblPlants:AT3G47870.1) - c.464A>C (EnsemblPlants:AT3G47870.1) Source type: large scale study Cross-references: | |||||||
tmp_3_17660525_C_G | 161 | E>D | 1000Genomes | ||||
Consequence: missense Predictions: - SIFT: tolerated (0.54) Somatic: No Accession: 3:g.17660525C>G Codon: GAG/GAC Consequence type: missense Cytogenetic band: Genomic location: 3:g.17660525C>G Locations: - p.Glu161Asp (EnsemblPlants:AT3G47870.1) - c.483G>C (EnsemblPlants:AT3G47870.1) Source type: large scale study Cross-references: | |||||||
tmp_3_17660524_G_A | 162 | L>F | 1000Genomes | ||||
Consequence: missense Predictions: - SIFT: tolerated (0.12) Somatic: No Accession: 3:g.17660524G>A Codon: CTT/TTT Consequence type: missense Cytogenetic band: Genomic location: 3:g.17660524G>A Locations: - p.Leu162Phe (EnsemblPlants:AT3G47870.1) - c.484C>T (EnsemblPlants:AT3G47870.1) Source type: large scale study Cross-references: | |||||||
tmp_3_17660507_A_C | 167 | N>K | 1000Genomes | ||||
Consequence: missense Predictions: - SIFT: tolerated (0.95) Somatic: No Accession: 3:g.17660507A>C Codon: AAT/AAG Consequence type: missense Cytogenetic band: Genomic location: 3:g.17660507A>C Locations: - p.Asn167Lys (EnsemblPlants:AT3G47870.1) - c.501T>G (EnsemblPlants:AT3G47870.1) Source type: large scale study Cross-references: | |||||||
ENSVATH14396895 | 167 | N>Y | 1000Genomes | ||||
Consequence: missense Predictions: - SIFT: tolerated (0.07) Somatic: No Accession: 3:g.17660509T>A Codon: AAT/TAT Consequence type: missense Cytogenetic band: Genomic location: 3:g.17660509T>A Locations: - p.Asn167Tyr (EnsemblPlants:AT3G47870.1) - c.499A>T (EnsemblPlants:AT3G47870.1) Source type: large scale study Cross-references: | |||||||
ENSVATH14396894 | 185 | N>K | 1000Genomes | ||||
Consequence: missense Predictions: - SIFT: tolerated (0.21) Somatic: No Accession: 3:g.17660453G>C Codon: AAC/AAG Consequence type: missense Cytogenetic band: Genomic location: 3:g.17660453G>C Locations: - p.Asn185Lys (EnsemblPlants:AT3G47870.1) - c.555C>G (EnsemblPlants:AT3G47870.1) Source type: large scale study Cross-references: | |||||||
ENSVATH06264249 | 196 | P>Q | 1000Genomes | ||||
Consequence: missense Predictions: - SIFT: deleterious (0.03) Somatic: No Accession: 3:g.17660421G>T Codon: CCA/CAA Consequence type: missense Cytogenetic band: Genomic location: 3:g.17660421G>T Locations: - p.Pro196Gln (EnsemblPlants:AT3G47870.1) - c.587C>A (EnsemblPlants:AT3G47870.1) Source type: large scale study Cross-references: | |||||||
tmp_3_17660417_G_T | 197 | F>L | 1000Genomes | ||||
Consequence: missense Predictions: - SIFT: tolerated (0.59) Somatic: No Accession: 3:g.17660417G>T Codon: TTC/TTA Consequence type: missense Cytogenetic band: Genomic location: 3:g.17660417G>T Locations: - p.Phe197Leu (EnsemblPlants:AT3G47870.1) - c.591C>A (EnsemblPlants:AT3G47870.1) Source type: large scale study Cross-references: | |||||||
ENSVATH06264248 | 201 | L>F | 1000Genomes | ||||
Consequence: missense Predictions: - SIFT: tolerated (0.08) Somatic: No Accession: 3:g.17660405T>G Codon: TTA/TTC Consequence type: missense Cytogenetic band: Genomic location: 3:g.17660405T>G Locations: - p.Leu201Phe (EnsemblPlants:AT3G47870.1) - c.603A>C (EnsemblPlants:AT3G47870.1) Source type: large scale study Cross-references: | |||||||
ENSVATH00406690 | 223 | N>S | 1000Genomes | ||||
Consequence: missense Predictions: - SIFT: tolerated (0.26) Somatic: No Accession: 3:g.17660340T>C Codon: AAC/AGC Consequence type: missense Cytogenetic band: Genomic location: 3:g.17660340T>C Locations: - p.Asn223Ser (EnsemblPlants:AT3G47870.1) - c.668A>G (EnsemblPlants:AT3G47870.1) Source type: large scale study Cross-references: | |||||||
ENSVATH12623132 | 233 | T>A | 1000Genomes | ||||
Consequence: missense Predictions: - SIFT: tolerated (0.52) Somatic: No Accession: 3:g.17660311T>C Codon: ACA/GCA Consequence type: missense Cytogenetic band: Genomic location: 3:g.17660311T>C Locations: - p.Thr233Ala (EnsemblPlants:AT3G47870.1) - c.697A>G (EnsemblPlants:AT3G47870.1) Source type: large scale study Cross-references: | |||||||
ENSVATH14396893 | 236 | G>D | 1000Genomes | ||||
Consequence: missense Predictions: - SIFT: tolerated (0.23) Somatic: No Accession: 3:g.17660301C>T Codon: GGC/GAC Consequence type: missense Cytogenetic band: Genomic location: 3:g.17660301C>T Locations: - p.Gly236Asp (EnsemblPlants:AT3G47870.1) - c.707G>A (EnsemblPlants:AT3G47870.1) Source type: large scale study Cross-references: | |||||||
tmp_3_17660273_A_C | 245 | N>K | 1000Genomes | ||||
Consequence: missense Predictions: - SIFT: tolerated (0.64) Somatic: No Accession: 3:g.17660273A>C Codon: AAT/AAG Consequence type: missense Cytogenetic band: Genomic location: 3:g.17660273A>C Locations: - p.Asn245Lys (EnsemblPlants:AT3G47870.1) - c.735T>G (EnsemblPlants:AT3G47870.1) Source type: large scale study Cross-references: | |||||||
ENSVATH06264247 | 247 | W>S | 1000Genomes | ||||
Consequence: missense Predictions: - SIFT: deleterious (0.02) Somatic: No Accession: 3:g.17660268C>G Codon: TGG/TCG Consequence type: missense Cytogenetic band: Genomic location: 3:g.17660268C>G Locations: - p.Trp247Ser (EnsemblPlants:AT3G47870.1) - c.740G>C (EnsemblPlants:AT3G47870.1) Source type: large scale study Cross-references: | |||||||
tmp_3_17660230_C_T | 260 | G>R | 1000Genomes | ||||
Consequence: missense Predictions: - SIFT: tolerated (0.52) Somatic: No Accession: 3:g.17660230C>T Codon: GGA/AGA Consequence type: missense Cytogenetic band: Genomic location: 3:g.17660230C>T Locations: - p.Gly260Arg (EnsemblPlants:AT3G47870.1) - c.778G>A (EnsemblPlants:AT3G47870.1) Source type: large scale study Cross-references: | |||||||
ENSVATH06264245 | 281 | I>M | 1000Genomes | ||||
Consequence: missense Predictions: - SIFT: tolerated (0.05) Somatic: No Accession: 3:g.17660165T>C Codon: ATA/ATG Consequence type: missense Cytogenetic band: Genomic location: 3:g.17660165T>C Locations: - p.Ile281Met (EnsemblPlants:AT3G47870.1) - c.843A>G (EnsemblPlants:AT3G47870.1) Source type: large scale study Cross-references: | |||||||
tmp_3_17660142_T_C | 289 | Q>R | 1000Genomes | ||||
Consequence: missense Predictions: - SIFT: deleterious (0.01) Somatic: No Accession: 3:g.17660142T>C Codon: CAA/CGA Consequence type: missense Cytogenetic band: Genomic location: 3:g.17660142T>C Locations: - p.Gln289Arg (EnsemblPlants:AT3G47870.1) - c.866A>G (EnsemblPlants:AT3G47870.1) Source type: large scale study Cross-references: | |||||||
tmp_3_17660119_C_G | 297 | V>L | 1000Genomes | ||||
Consequence: missense Predictions: - SIFT: tolerated (0.64) Somatic: No Accession: 3:g.17660119C>G Codon: GTG/CTG Consequence type: missense Cytogenetic band: Genomic location: 3:g.17660119C>G Locations: - p.Val297Leu (EnsemblPlants:AT3G47870.1) - c.889G>C (EnsemblPlants:AT3G47870.1) Source type: large scale study Cross-references: | |||||||
ENSVATH02465468 | 300 | E>G | 1000Genomes | ||||
Consequence: missense Predictions: - SIFT: tolerated (0.26) Somatic: No Accession: 3:g.17660109T>C Codon: GAA/GGA Consequence type: missense Cytogenetic band: Genomic location: 3:g.17660109T>C Locations: - p.Glu300Gly (EnsemblPlants:AT3G47870.1) - c.899A>G (EnsemblPlants:AT3G47870.1) Source type: large scale study Cross-references: | |||||||
ENSVATH00406689 | 329 | *>Y | 1000Genomes | ||||
Consequence: stop lost Somatic: No Accession: 3:g.17660021C>G Codon: TAG/TAC Consequence type: stop lost Cytogenetic band: Genomic location: 3:g.17660021C>G Locations: - p.Ter329TyrextTer35 (EnsemblPlants:AT3G47870.1) - c.987G>C (EnsemblPlants:AT3G47870.1) Source type: large scale study Cross-references: |