Q9SNB0 · U76E6_ARATH
- ProteinUDP-glycosyltransferase 76E6
- GeneUGT76E6
- StatusUniProtKB reviewed (Swiss-Prot)
- Amino acids449 (go to sequence)
- Protein existenceEvidence at transcript level
- Annotation score2/5
Variants
Variant ID(s) | Position(s) | Change | Description | Clinical significance | Provenance | ||
---|---|---|---|---|---|---|---|
tmp_3_17196718_C_A | 9 | R>M | 1000Genomes | ||||
Consequence: missense Predictions: - SIFT: deleterious (0) Somatic: No Accession: 3:g.17196718C>A Codon: AGG/ATG Consequence type: missense Cytogenetic band: Genomic location: 3:g.17196718C>A Locations: - p.Arg9Met (EnsemblPlants:AT3G46680.1) - c.26G>T (EnsemblPlants:AT3G46680.1) Source type: large scale study Cross-references: | |||||||
ENSVATH14385458 | 10 | I>V | 1000Genomes | ||||
Consequence: missense Predictions: - SIFT: tolerated (0.66) Somatic: No Accession: 3:g.17196716T>C Codon: ATA/GTA Consequence type: missense Cytogenetic band: Genomic location: 3:g.17196716T>C Locations: - p.Ile10Val (EnsemblPlants:AT3G46680.1) - c.28A>G (EnsemblPlants:AT3G46680.1) Source type: large scale study Cross-references: | |||||||
ENSVATH14385457 | 11 | V>E | 1000Genomes | ||||
Consequence: missense Predictions: - SIFT: deleterious (0) Somatic: No Accession: 3:g.17196712A>T Codon: GTG/GAG Consequence type: missense Cytogenetic band: Genomic location: 3:g.17196712A>T Locations: - p.Val11Glu (EnsemblPlants:AT3G46680.1) - c.32T>A (EnsemblPlants:AT3G46680.1) Source type: large scale study Cross-references: | |||||||
tmp_3_17196713_C_T,G | 11 | V>L | 1000Genomes | ||||
Consequence: missense Predictions: - SIFT: deleterious (0.01) Somatic: No Accession: 3:g.17196713C>G Codon: GTG/CTG Consequence type: missense Cytogenetic band: Genomic location: 3:g.17196713C>G Locations: - p.Val11Leu (EnsemblPlants:AT3G46680.1) - c.31G>C (EnsemblPlants:AT3G46680.1) Source type: large scale study Cross-references: | |||||||
tmp_3_17196713_C_T,G | 11 | V>M | 1000Genomes | ||||
Consequence: missense Predictions: - SIFT: deleterious (0) Somatic: No Accession: 3:g.17196713C>T Codon: GTG/ATG Consequence type: missense Cytogenetic band: Genomic location: 3:g.17196713C>T Locations: - p.Val11Met (EnsemblPlants:AT3G46680.1) - c.31G>A (EnsemblPlants:AT3G46680.1) Source type: large scale study Cross-references: | |||||||
ENSVATH00403458 | 19 | R>G | 1000Genomes | ||||
Consequence: missense Predictions: - SIFT: tolerated (1) Somatic: No Accession: 3:g.17196689T>C Codon: AGA/GGA Consequence type: missense Cytogenetic band: Genomic location: 3:g.17196689T>C Locations: - p.Arg19Gly (EnsemblPlants:AT3G46680.1) - c.55A>G (EnsemblPlants:AT3G46680.1) Source type: large scale study Cross-references: | |||||||
ENSVATH14385456 | 24 | M>L | 1000Genomes | ||||
Consequence: missense Predictions: - SIFT: tolerated (0.06) Somatic: No Accession: 3:g.17196674T>A Codon: ATG/TTG Consequence type: missense Cytogenetic band: Genomic location: 3:g.17196674T>A Locations: - p.Met24Leu (EnsemblPlants:AT3G46680.1) - c.70A>T (EnsemblPlants:AT3G46680.1) Source type: large scale study Cross-references: | |||||||
ENSVATH12579408 | 29 | T>A | 1000Genomes | ||||
Consequence: missense Predictions: - SIFT: tolerated (0.37) Somatic: No Accession: 3:g.17196659T>C Codon: ACA/GCA Consequence type: missense Cytogenetic band: Genomic location: 3:g.17196659T>C Locations: - p.Thr29Ala (EnsemblPlants:AT3G46680.1) - c.85A>G (EnsemblPlants:AT3G46680.1) Source type: large scale study Cross-references: | |||||||
tmp_3_17196650_T_G | 32 | N>H | 1000Genomes | ||||
Consequence: missense Predictions: - SIFT: tolerated (1) Somatic: No Accession: 3:g.17196650T>G Codon: AAC/CAC Consequence type: missense Cytogenetic band: Genomic location: 3:g.17196650T>G Locations: - p.Asn32His (EnsemblPlants:AT3G46680.1) - c.94A>C (EnsemblPlants:AT3G46680.1) Source type: large scale study Cross-references: | |||||||
tmp_3_17196631_A_G | 38 | I>T | 1000Genomes | ||||
Consequence: missense Predictions: - SIFT: deleterious (0) Somatic: No Accession: 3:g.17196631A>G Codon: ATT/ACT Consequence type: missense Cytogenetic band: Genomic location: 3:g.17196631A>G Locations: - p.Ile38Thr (EnsemblPlants:AT3G46680.1) - c.113T>C (EnsemblPlants:AT3G46680.1) Source type: large scale study Cross-references: | |||||||
tmp_3_17196632_T_C | 38 | I>V | 1000Genomes | ||||
Consequence: missense Predictions: - SIFT: deleterious (0.04) Somatic: No Accession: 3:g.17196632T>C Codon: ATT/GTT Consequence type: missense Cytogenetic band: Genomic location: 3:g.17196632T>C Locations: - p.Ile38Val (EnsemblPlants:AT3G46680.1) - c.112A>G (EnsemblPlants:AT3G46680.1) Source type: large scale study Cross-references: | |||||||
ENSVATH02453426 | 39 | T>S | 1000Genomes | ||||
Consequence: missense Predictions: - SIFT: tolerated (0.08) Somatic: No Accession: 3:g.17196629T>A Codon: ACT/TCT Consequence type: missense Cytogenetic band: Genomic location: 3:g.17196629T>A Locations: - p.Thr39Ser (EnsemblPlants:AT3G46680.1) - c.115A>T (EnsemblPlants:AT3G46680.1) Source type: large scale study Cross-references: | |||||||
tmp_3_17196626_C_T | 40 | V>I | 1000Genomes | ||||
Consequence: missense Predictions: - SIFT: tolerated (0.4) Somatic: No Accession: 3:g.17196626C>T Codon: GTT/ATT Consequence type: missense Cytogenetic band: Genomic location: 3:g.17196626C>T Locations: - p.Val40Ile (EnsemblPlants:AT3G46680.1) - c.118G>A (EnsemblPlants:AT3G46680.1) Source type: large scale study Cross-references: | |||||||
ENSVATH12579406 | 54 | F>I | 1000Genomes | ||||
Consequence: missense Predictions: - SIFT: tolerated (0.06) Somatic: No Accession: 3:g.17196584A>T Codon: TTT/ATT Consequence type: missense Cytogenetic band: Genomic location: 3:g.17196584A>T Locations: - p.Phe54Ile (EnsemblPlants:AT3G46680.1) - c.160T>A (EnsemblPlants:AT3G46680.1) Source type: large scale study Cross-references: | |||||||
tmp_3_17196565_A_C | 60 | V>G | 1000Genomes | ||||
Consequence: missense Predictions: - SIFT: deleterious (0) Somatic: No Accession: 3:g.17196565A>C Codon: GTA/GGA Consequence type: missense Cytogenetic band: Genomic location: 3:g.17196565A>C Locations: - p.Val60Gly (EnsemblPlants:AT3G46680.1) - c.179T>G (EnsemblPlants:AT3G46680.1) Source type: large scale study Cross-references: | |||||||
ENSVATH06251055 | 61 | T>I | 1000Genomes | ||||
Consequence: missense Predictions: - SIFT: deleterious (0.03) Somatic: No Accession: 3:g.17196562G>A Codon: ACC/ATC Consequence type: missense Cytogenetic band: Genomic location: 3:g.17196562G>A Locations: - p.Thr61Ile (EnsemblPlants:AT3G46680.1) - c.182C>T (EnsemblPlants:AT3G46680.1) Source type: large scale study Cross-references: | |||||||
ENSVATH06251055 | 61 | T>N | 1000Genomes | ||||
Consequence: missense Predictions: - SIFT: tolerated (0.07) Somatic: No Accession: 3:g.17196562G>T Codon: ACC/AAC Consequence type: missense Cytogenetic band: Genomic location: 3:g.17196562G>T Locations: - p.Thr61Asn (EnsemblPlants:AT3G46680.1) - c.182C>A (EnsemblPlants:AT3G46680.1) Source type: large scale study Cross-references: | |||||||
tmp_3_17196556_G_C | 63 | P>R | 1000Genomes | ||||
Consequence: missense Predictions: - SIFT: deleterious (0) Somatic: No Accession: 3:g.17196556G>C Codon: CCA/CGA Consequence type: missense Cytogenetic band: Genomic location: 3:g.17196556G>C Locations: - p.Pro63Arg (EnsemblPlants:AT3G46680.1) - c.188C>G (EnsemblPlants:AT3G46680.1) Source type: large scale study Cross-references: | |||||||
tmp_3_17196557_G_A | 63 | P>S | 1000Genomes | ||||
Consequence: missense Predictions: - SIFT: tolerated (0.13) Somatic: No Accession: 3:g.17196557G>A Codon: CCA/TCA Consequence type: missense Cytogenetic band: Genomic location: 3:g.17196557G>A Locations: - p.Pro63Ser (EnsemblPlants:AT3G46680.1) - c.187C>T (EnsemblPlants:AT3G46680.1) Source type: large scale study Cross-references: | |||||||
ENSVATH00403457 | 64 | D>E | 1000Genomes | ||||
Consequence: missense Predictions: - SIFT: tolerated (0.13) Somatic: No Accession: 3:g.17196552A>C Codon: GAT/GAG Consequence type: missense Cytogenetic band: Genomic location: 3:g.17196552A>C Locations: - p.Asp64Glu (EnsemblPlants:AT3G46680.1) - c.192T>G (EnsemblPlants:AT3G46680.1) Source type: large scale study Cross-references: | |||||||
tmp_3_17196539_G_A | 69 | P>S | 1000Genomes | ||||
Consequence: missense Predictions: - SIFT: tolerated (0.47) Somatic: No Accession: 3:g.17196539G>A Codon: CCA/TCA Consequence type: missense Cytogenetic band: Genomic location: 3:g.17196539G>A Locations: - p.Pro69Ser (EnsemblPlants:AT3G46680.1) - c.205C>T (EnsemblPlants:AT3G46680.1) Source type: large scale study Cross-references: | |||||||
ENSVATH02453424 | 74 | E>D | 1000Genomes | ||||
Consequence: missense Predictions: - SIFT: tolerated (0.44) Somatic: No Accession: 3:g.17196522C>A Codon: GAG/GAT Consequence type: missense Cytogenetic band: Genomic location: 3:g.17196522C>A Locations: - p.Glu74Asp (EnsemblPlants:AT3G46680.1) - c.222G>T (EnsemblPlants:AT3G46680.1) Source type: large scale study Cross-references: | |||||||
tmp_3_17196524_C_T | 74 | E>K | 1000Genomes | ||||
Consequence: missense Predictions: - SIFT: tolerated (0.88) Somatic: No Accession: 3:g.17196524C>T Codon: GAG/AAG Consequence type: missense Cytogenetic band: Genomic location: 3:g.17196524C>T Locations: - p.Glu74Lys (EnsemblPlants:AT3G46680.1) - c.220G>A (EnsemblPlants:AT3G46680.1) Source type: large scale study Cross-references: | |||||||
tmp_3_17196518_G_T | 76 | L>I | 1000Genomes | ||||
Consequence: missense Predictions: - SIFT: tolerated (0.28) Somatic: No Accession: 3:g.17196518G>T Codon: CTC/ATC Consequence type: missense Cytogenetic band: Genomic location: 3:g.17196518G>T Locations: - p.Leu76Ile (EnsemblPlants:AT3G46680.1) - c.226C>A (EnsemblPlants:AT3G46680.1) Source type: large scale study Cross-references: | |||||||
tmp_3_17196511_G_T | 78 | P>Q | 1000Genomes | ||||
Consequence: missense Predictions: - SIFT: tolerated (0.46) Somatic: No Accession: 3:g.17196511G>T Codon: CCG/CAG Consequence type: missense Cytogenetic band: Genomic location: 3:g.17196511G>T Locations: - p.Pro78Gln (EnsemblPlants:AT3G46680.1) - c.233C>A (EnsemblPlants:AT3G46680.1) Source type: large scale study Cross-references: | |||||||
tmp_3_17196506_C_T | 80 | E>K | 1000Genomes | ||||
Consequence: missense Predictions: - SIFT: tolerated (0.64) Somatic: No Accession: 3:g.17196506C>T Codon: GAG/AAG Consequence type: missense Cytogenetic band: Genomic location: 3:g.17196506C>T Locations: - p.Glu80Lys (EnsemblPlants:AT3G46680.1) - c.238G>A (EnsemblPlants:AT3G46680.1) Source type: large scale study Cross-references: | |||||||
ENSVATH14385455 | 84 | E>K | 1000Genomes | ||||
Consequence: missense Predictions: - SIFT: tolerated (1) Somatic: No Accession: 3:g.17196494C>T Codon: GAG/AAG Consequence type: missense Cytogenetic band: Genomic location: 3:g.17196494C>T Locations: - p.Glu84Lys (EnsemblPlants:AT3G46680.1) - c.250G>A (EnsemblPlants:AT3G46680.1) Source type: large scale study Cross-references: | |||||||
ENSVATH00403454 | 85 | I>L | 1000Genomes | ||||
Consequence: missense Predictions: - SIFT: tolerated (1) Somatic: No Accession: 3:g.17196491T>G Codon: ATC/CTC Consequence type: missense Cytogenetic band: Genomic location: 3:g.17196491T>G Locations: - p.Ile85Leu (EnsemblPlants:AT3G46680.1) - c.253A>C (EnsemblPlants:AT3G46680.1) Source type: large scale study Cross-references: | |||||||
ENSVATH00403453 | 91 | A>E | 1000Genomes | ||||
Consequence: missense Predictions: - SIFT: tolerated (0.32) Somatic: No Accession: 3:g.17196472G>T Codon: GCA/GAA Consequence type: missense Cytogenetic band: Genomic location: 3:g.17196472G>T Locations: - p.Ala91Glu (EnsemblPlants:AT3G46680.1) - c.272C>A (EnsemblPlants:AT3G46680.1) Source type: large scale study Cross-references: | |||||||
ENSVATH06251054 | 91 | A>T | 1000Genomes | ||||
Consequence: missense Predictions: - SIFT: tolerated (0.15) Somatic: No Accession: 3:g.17196473C>T Codon: GCA/ACA Consequence type: missense Cytogenetic band: Genomic location: 3:g.17196473C>T Locations: - p.Ala91Thr (EnsemblPlants:AT3G46680.1) - c.271G>A (EnsemblPlants:AT3G46680.1) Source type: large scale study Cross-references: | |||||||
ENSVATH06251053 | 96 | C>G | 1000Genomes | ||||
Consequence: missense Predictions: - SIFT: deleterious (0.01) Somatic: No Accession: 3:g.17196458A>C Codon: TGT/GGT Consequence type: missense Cytogenetic band: Genomic location: 3:g.17196458A>C Locations: - p.Cys96Gly (EnsemblPlants:AT3G46680.1) - c.286T>G (EnsemblPlants:AT3G46680.1) Source type: large scale study Cross-references: | |||||||
ENSVATH06251052 | 96 | C>Y | 1000Genomes | ||||
Consequence: missense Predictions: - SIFT: tolerated (0.07) Somatic: No Accession: 3:g.17196457C>T Codon: TGT/TAT Consequence type: missense Cytogenetic band: Genomic location: 3:g.17196457C>T Locations: - p.Cys96Tyr (EnsemblPlants:AT3G46680.1) - c.287G>A (EnsemblPlants:AT3G46680.1) Source type: large scale study Cross-references: | |||||||
ENSVATH00403452 | 100 | S>L | 1000Genomes | ||||
Consequence: missense Predictions: - SIFT: tolerated (1) Somatic: No Accession: 3:g.17196445G>A Codon: TCG/TTG Consequence type: missense Cytogenetic band: Genomic location: 3:g.17196445G>A Locations: - p.Ser100Leu (EnsemblPlants:AT3G46680.1) - c.299C>T (EnsemblPlants:AT3G46680.1) Source type: large scale study Cross-references: | |||||||
tmp_3_17196434_G_C | 104 | Q>E | 1000Genomes | ||||
Consequence: missense Predictions: - SIFT: tolerated (0.2) Somatic: No Accession: 3:g.17196434G>C Codon: CAA/GAA Consequence type: missense Cytogenetic band: Genomic location: 3:g.17196434G>C Locations: - p.Gln104Glu (EnsemblPlants:AT3G46680.1) - c.310C>G (EnsemblPlants:AT3G46680.1) Source type: large scale study Cross-references: | |||||||
tmp_3_17196418_G_C | 109 | A>G | 1000Genomes | ||||
Consequence: missense Predictions: - SIFT: deleterious (0.01) Somatic: No Accession: 3:g.17196418G>C Codon: GCA/GGA Consequence type: missense Cytogenetic band: Genomic location: 3:g.17196418G>C Locations: - p.Ala109Gly (EnsemblPlants:AT3G46680.1) - c.326C>G (EnsemblPlants:AT3G46680.1) Source type: large scale study Cross-references: | |||||||
ENSVATH12579374 | 112 | I>M | 1000Genomes | ||||
Consequence: missense Predictions: - SIFT: deleterious (0) Somatic: No Accession: 3:g.17196408G>C Codon: ATC/ATG Consequence type: missense Cytogenetic band: Genomic location: 3:g.17196408G>C Locations: - p.Ile112Met (EnsemblPlants:AT3G46680.1) - c.336C>G (EnsemblPlants:AT3G46680.1) Source type: large scale study Cross-references: | |||||||
ENSVATH06251051 | 112 | I>V | 1000Genomes | ||||
Consequence: missense Predictions: - SIFT: tolerated (0.09) Somatic: No Accession: 3:g.17196410T>C Codon: ATC/GTC Consequence type: missense Cytogenetic band: Genomic location: 3:g.17196410T>C Locations: - p.Ile112Val (EnsemblPlants:AT3G46680.1) - c.334A>G (EnsemblPlants:AT3G46680.1) Source type: large scale study Cross-references: | |||||||
tmp_3_17196398_A_G | 116 | Y>H | 1000Genomes | ||||
Consequence: missense Predictions: - SIFT: tolerated (0.05) Somatic: No Accession: 3:g.17196398A>G Codon: TAT/CAT Consequence type: missense Cytogenetic band: Genomic location: 3:g.17196398A>G Locations: - p.Tyr116His (EnsemblPlants:AT3G46680.1) - c.346T>C (EnsemblPlants:AT3G46680.1) Source type: large scale study Cross-references: | |||||||
tmp_3_17196383_C_T | 121 | G>R | 1000Genomes | ||||
Consequence: missense Predictions: - SIFT: deleterious (0.01) Somatic: No Accession: 3:g.17196383C>T Codon: GGA/AGA Consequence type: missense Cytogenetic band: Genomic location: 3:g.17196383C>T Locations: - p.Gly121Arg (EnsemblPlants:AT3G46680.1) - c.361G>A (EnsemblPlants:AT3G46680.1) Source type: large scale study Cross-references: | |||||||
ENSVATH06251049 | 128 | N>S | 1000Genomes | ||||
Consequence: missense Predictions: - SIFT: tolerated (0.09) Somatic: No Accession: 3:g.17196361T>C Codon: AAC/AGC Consequence type: missense Cytogenetic band: Genomic location: 3:g.17196361T>C Locations: - p.Asn128Ser (EnsemblPlants:AT3G46680.1) - c.383A>G (EnsemblPlants:AT3G46680.1) Source type: large scale study Cross-references: | |||||||
ENSVATH00403451 | 129 | L>H | 1000Genomes | ||||
Consequence: missense Predictions: - SIFT: deleterious (0) Somatic: No Accession: 3:g.17196358A>T Codon: CTT/CAT Consequence type: missense Cytogenetic band: Genomic location: 3:g.17196358A>T Locations: - p.Leu129His (EnsemblPlants:AT3G46680.1) - c.386T>A (EnsemblPlants:AT3G46680.1) Source type: large scale study Cross-references: | |||||||
ENSVATH02453423 | 129 | L>I | 1000Genomes | ||||
Consequence: missense Predictions: - SIFT: tolerated (0.6) Somatic: No Accession: 3:g.17196359G>T Codon: CTT/ATT Consequence type: missense Cytogenetic band: Genomic location: 3:g.17196359G>T Locations: - p.Leu129Ile (EnsemblPlants:AT3G46680.1) - c.385C>A (EnsemblPlants:AT3G46680.1) Source type: large scale study Cross-references: | |||||||
ENSVATH02453422 | 130 | P>L | 1000Genomes | ||||
Consequence: missense Predictions: - SIFT: deleterious (0.03) Somatic: No Accession: 3:g.17196355G>A Codon: CCT/CTT Consequence type: missense Cytogenetic band: Genomic location: 3:g.17196355G>A Locations: - p.Pro130Leu (EnsemblPlants:AT3G46680.1) - c.389C>T (EnsemblPlants:AT3G46680.1) Source type: large scale study Cross-references: | |||||||
tmp_3_17196353_T_A | 131 | S>C | 1000Genomes | ||||
Consequence: missense Predictions: - SIFT: tolerated (0.06) Somatic: No Accession: 3:g.17196353T>A Codon: AGT/TGT Consequence type: missense Cytogenetic band: Genomic location: 3:g.17196353T>A Locations: - p.Ser131Cys (EnsemblPlants:AT3G46680.1) - c.391A>T (EnsemblPlants:AT3G46680.1) Source type: large scale study Cross-references: | |||||||
tmp_3_17196335_G_A | 137 | Q>* | 1000Genomes | ||||
Consequence: stop gained Somatic: No Accession: 3:g.17196335G>A Codon: CAA/TAA Consequence type: stop gained Cytogenetic band: Genomic location: 3:g.17196335G>A Locations: - p.Gln137Ter (EnsemblPlants:AT3G46680.1) - c.409C>T (EnsemblPlants:AT3G46680.1) Source type: large scale study Cross-references: | |||||||
ENSVATH06251046 | 140 | T>S | 1000Genomes | ||||
Consequence: missense Predictions: - SIFT: tolerated (0.23) Somatic: No Accession: 3:g.17196326T>A Codon: ACT/TCT Consequence type: missense Cytogenetic band: Genomic location: 3:g.17196326T>A Locations: - p.Thr140Ser (EnsemblPlants:AT3G46680.1) - c.418A>T (EnsemblPlants:AT3G46680.1) Source type: large scale study Cross-references: | |||||||
tmp_3_17196317_C_G | 143 | V>L | 1000Genomes | ||||
Consequence: missense Predictions: - SIFT: tolerated (0.71) Somatic: No Accession: 3:g.17196317C>G Codon: GTT/CTT Consequence type: missense Cytogenetic band: Genomic location: 3:g.17196317C>G Locations: - p.Val143Leu (EnsemblPlants:AT3G46680.1) - c.427G>C (EnsemblPlants:AT3G46680.1) Source type: large scale study Cross-references: | |||||||
ENSVATH14385454 | 145 | R>L | 1000Genomes | ||||
Consequence: missense Predictions: - SIFT: tolerated (0.2) Somatic: No Accession: 3:g.17196310C>A Codon: CGT/CTT Consequence type: missense Cytogenetic band: Genomic location: 3:g.17196310C>A Locations: - p.Arg145Leu (EnsemblPlants:AT3G46680.1) - c.434G>T (EnsemblPlants:AT3G46680.1) Source type: large scale study Cross-references: | |||||||
ENSVATH00403450 | 149 | R>S | 1000Genomes | ||||
Consequence: missense Predictions: - SIFT: tolerated (0.77) Somatic: No Accession: 3:g.17196297T>G, 3:g.17196297T>A Codon: AGA/AGC Consequence type: missense Cytogenetic band: Genomic location: 3:g.17196297T>G, 3:g.17196297T>A Locations: - p.Arg149Ser (EnsemblPlants:AT3G46680.1) - c.447A>C (EnsemblPlants:AT3G46680.1) - c.447A>T (EnsemblPlants:AT3G46680.1) Source type: large scale study Cross-references: | |||||||
ENSVATH02453421 | 152 | S>R | 1000Genomes | ||||
Consequence: missense Predictions: - SIFT: tolerated (0.36) Somatic: No Accession: 3:g.17196288A>C Codon: AGT/AGG Consequence type: missense Cytogenetic band: Genomic location: 3:g.17196288A>C Locations: - p.Ser152Arg (EnsemblPlants:AT3G46680.1) - c.456T>G (EnsemblPlants:AT3G46680.1) Source type: large scale study Cross-references: | |||||||
tmp_3_17196271_A_G | 158 | V>A | 1000Genomes | ||||
Consequence: missense Predictions: - SIFT: tolerated (0.42) Somatic: No Accession: 3:g.17196271A>G Codon: GTG/GCG Consequence type: missense Cytogenetic band: Genomic location: 3:g.17196271A>G Locations: - p.Val158Ala (EnsemblPlants:AT3G46680.1) - c.473T>C (EnsemblPlants:AT3G46680.1) Source type: large scale study Cross-references: | |||||||
ENSVATH06251043 | 159 | D>N | 1000Genomes | ||||
Consequence: missense Predictions: - SIFT: tolerated (0.32) Somatic: No Accession: 3:g.17196269C>T Codon: GAC/AAC Consequence type: missense Cytogenetic band: Genomic location: 3:g.17196269C>T Locations: - p.Asp159Asn (EnsemblPlants:AT3G46680.1) - c.475G>A (EnsemblPlants:AT3G46680.1) Source type: large scale study Cross-references: | |||||||
tmp_3_17196180_G_T | 163 | P>H | 1000Genomes | ||||
Consequence: missense Predictions: - SIFT: tolerated (0.12) Somatic: No Accession: 3:g.17196180G>T Codon: CCT/CAT Consequence type: missense Cytogenetic band: Genomic location: 3:g.17196180G>T Locations: - p.Pro163His (EnsemblPlants:AT3G46680.1) - c.488C>A (EnsemblPlants:AT3G46680.1) Source type: large scale study Cross-references: | |||||||
ENSVATH14385451 | 164 | E>G | 1000Genomes | ||||
Consequence: missense Predictions: - SIFT: tolerated (0.34) Somatic: No Accession: 3:g.17196177T>C Codon: GAA/GGA Consequence type: missense Cytogenetic band: Genomic location: 3:g.17196177T>C Locations: - p.Glu164Gly (EnsemblPlants:AT3G46680.1) - c.491A>G (EnsemblPlants:AT3G46680.1) Source type: large scale study Cross-references: | |||||||
tmp_3_17196178_C_T | 164 | E>K | 1000Genomes | ||||
Consequence: missense Predictions: - SIFT: tolerated (0.66) Somatic: No Accession: 3:g.17196178C>T Codon: GAA/AAA Consequence type: missense Cytogenetic band: Genomic location: 3:g.17196178C>T Locations: - p.Glu164Lys (EnsemblPlants:AT3G46680.1) - c.490G>A (EnsemblPlants:AT3G46680.1) Source type: large scale study Cross-references: | |||||||
tmp_3_17196175_C_G | 165 | V>L | 1000Genomes | ||||
Consequence: missense Predictions: - SIFT: tolerated (0.72) Somatic: No Accession: 3:g.17196175C>G Codon: GTG/CTG Consequence type: missense Cytogenetic band: Genomic location: 3:g.17196175C>G Locations: - p.Val165Leu (EnsemblPlants:AT3G46680.1) - c.493G>C (EnsemblPlants:AT3G46680.1) Source type: large scale study Cross-references: | |||||||
tmp_3_17196172_G_A | 166 | Q>* | 1000Genomes | ||||
Consequence: stop gained Somatic: No Accession: 3:g.17196172G>A Codon: CAG/TAG Consequence type: stop gained Cytogenetic band: Genomic location: 3:g.17196172G>A Locations: - p.Gln166Ter (EnsemblPlants:AT3G46680.1) - c.496C>T (EnsemblPlants:AT3G46680.1) Source type: large scale study Cross-references: | |||||||
tmp_3_17196168_T_C | 167 | E>G | 1000Genomes | ||||
Consequence: missense Predictions: - SIFT: tolerated (0.06) Somatic: No Accession: 3:g.17196168T>C Codon: GAA/GGA Consequence type: missense Cytogenetic band: Genomic location: 3:g.17196168T>C Locations: - p.Glu167Gly (EnsemblPlants:AT3G46680.1) - c.500A>G (EnsemblPlants:AT3G46680.1) Source type: large scale study Cross-references: | |||||||
tmp_3_17196161_C_G | 169 | L>F | 1000Genomes | ||||
Consequence: missense Predictions: - SIFT: tolerated (0.07) Somatic: No Accession: 3:g.17196161C>G Codon: TTG/TTC Consequence type: missense Cytogenetic band: Genomic location: 3:g.17196161C>G Locations: - p.Leu169Phe (EnsemblPlants:AT3G46680.1) - c.507G>C (EnsemblPlants:AT3G46680.1) Source type: large scale study Cross-references: | |||||||
ENSVATH00403447 | 170 | V>M | Plants were checked bi-weekly for presence of first buds and the average flowering time of 4 plants of the same accession were collected [22c and 16 hrs daylight] (EnsemblGenome) Plants were checked bi-weekly for presence of first buds and the average leaf number at flowering time of 4 plants of the same accession were collected [22c and 16 hrs daylight] (EnsemblGenome) | 1000Genomes | |||
Consequence: missense Predictions: - SIFT: deleterious (0) Somatic: No Accession: 3:g.17196160C>T Codon: GTG/ATG Consequence type: missense Cytogenetic band: Genomic location: 3:g.17196160C>T Locations: - p.Val170Met (EnsemblPlants:AT3G46680.1) - c.508G>A (EnsemblPlants:AT3G46680.1) Source type: large scale study Cross-references: | |||||||
ENSVATH02453419 | 172 | N>I | 1000Genomes | ||||
Consequence: missense Predictions: - SIFT: tolerated (0.1) Somatic: No Accession: 3:g.17196153T>A Codon: AAT/ATT Consequence type: missense Cytogenetic band: Genomic location: 3:g.17196153T>A Locations: - p.Asn172Ile (EnsemblPlants:AT3G46680.1) - c.515A>T (EnsemblPlants:AT3G46680.1) Source type: large scale study Cross-references: | |||||||
ENSVATH02453419 | 172 | N>T | 1000Genomes | ||||
Consequence: missense Predictions: - SIFT: tolerated (0.29) Somatic: No Accession: 3:g.17196153T>G Codon: AAT/ACT Consequence type: missense Cytogenetic band: Genomic location: 3:g.17196153T>G Locations: - p.Asn172Thr (EnsemblPlants:AT3G46680.1) - c.515A>C (EnsemblPlants:AT3G46680.1) Source type: large scale study Cross-references: | |||||||
tmp_3_17196130_C_A | 180 | D>Y | 1000Genomes | ||||
Consequence: missense Predictions: - SIFT: deleterious (0) Somatic: No Accession: 3:g.17196130C>A Codon: GAC/TAC Consequence type: missense Cytogenetic band: Genomic location: 3:g.17196130C>A Locations: - p.Asp180Tyr (EnsemblPlants:AT3G46680.1) - c.538G>T (EnsemblPlants:AT3G46680.1) Source type: large scale study Cross-references: | |||||||
ENSVATH12579370 | 187 | G>E | 1000Genomes | ||||
Consequence: missense Predictions: - SIFT: tolerated (0.22) Somatic: No Accession: 3:g.17196108C>T Codon: GGG/GAG Consequence type: missense Cytogenetic band: Genomic location: 3:g.17196108C>T Locations: - p.Gly187Glu (EnsemblPlants:AT3G46680.1) - c.560G>A (EnsemblPlants:AT3G46680.1) Source type: large scale study Cross-references: | |||||||
ENSVATH02453417 | 188 | P>S | 1000Genomes | ||||
Consequence: missense Predictions: - SIFT: tolerated (0.39) Somatic: No Accession: 3:g.17196106G>A Codon: CCA/TCA Consequence type: missense Cytogenetic band: Genomic location: 3:g.17196106G>A Locations: - p.Pro188Ser (EnsemblPlants:AT3G46680.1) - c.562C>T (EnsemblPlants:AT3G46680.1) Source type: large scale study Cross-references: | |||||||
ENSVATH06251036 | 191 | R>L | 1000Genomes | ||||
Consequence: missense Predictions: - SIFT: tolerated (0.28) Somatic: No Accession: 3:g.17196096C>A Codon: CGA/CTA Consequence type: missense Cytogenetic band: Genomic location: 3:g.17196096C>A Locations: - p.Arg191Leu (EnsemblPlants:AT3G46680.1) - c.572G>T (EnsemblPlants:AT3G46680.1) Source type: large scale study Cross-references: | |||||||
tmp_3_17196081_C_T | 196 | C>Y | 1000Genomes | ||||
Consequence: missense Predictions: - SIFT: tolerated (1) Somatic: No Accession: 3:g.17196081C>T Codon: TGT/TAT Consequence type: missense Cytogenetic band: Genomic location: 3:g.17196081C>T Locations: - p.Cys196Tyr (EnsemblPlants:AT3G46680.1) - c.587G>A (EnsemblPlants:AT3G46680.1) Source type: large scale study Cross-references: | |||||||
ENSVATH06251035 | 197 | R>M | 1000Genomes | ||||
Consequence: missense Predictions: - SIFT: tolerated (0.15) Somatic: No Accession: 3:g.17196078C>A Codon: AGG/ATG Consequence type: missense Cytogenetic band: Genomic location: 3:g.17196078C>A Locations: - p.Arg197Met (EnsemblPlants:AT3G46680.1) - c.590G>T (EnsemblPlants:AT3G46680.1) Source type: large scale study Cross-references: | |||||||
ENSVATH12579369 | 207 | A>D | 1000Genomes | ||||
Consequence: missense Predictions: - SIFT: deleterious (0) Somatic: No Accession: 3:g.17196048G>T Codon: GCT/GAT Consequence type: missense Cytogenetic band: Genomic location: 3:g.17196048G>T Locations: - p.Ala207Asp (EnsemblPlants:AT3G46680.1) - c.620C>A (EnsemblPlants:AT3G46680.1) Source type: large scale study Cross-references: | |||||||
tmp_3_17196045_A_G | 208 | V>A | 1000Genomes | ||||
Consequence: missense Predictions: - SIFT: deleterious (0.05) Somatic: No Accession: 3:g.17196045A>G Codon: GTT/GCT Consequence type: missense Cytogenetic band: Genomic location: 3:g.17196045A>G Locations: - p.Val208Ala (EnsemblPlants:AT3G46680.1) - c.623T>C (EnsemblPlants:AT3G46680.1) Source type: large scale study Cross-references: | |||||||
ENSVATH12579367 | 208 | V>L | 1000Genomes | ||||
Consequence: missense Predictions: - SIFT: deleterious (0.05) Somatic: No Accession: 3:g.17196046C>G Codon: GTT/CTT Consequence type: missense Cytogenetic band: Genomic location: 3:g.17196046C>G Locations: - p.Val208Leu (EnsemblPlants:AT3G46680.1) - c.622G>C (EnsemblPlants:AT3G46680.1) Source type: large scale study Cross-references: | |||||||
ENSVATH12579366 | 210 | I>L | 1000Genomes | ||||
Consequence: missense Predictions: - SIFT: tolerated (0.37) Somatic: No Accession: 3:g.17196040T>G Codon: ATC/CTC Consequence type: missense Cytogenetic band: Genomic location: 3:g.17196040T>G Locations: - p.Ile210Leu (EnsemblPlants:AT3G46680.1) - c.628A>C (EnsemblPlants:AT3G46680.1) Source type: large scale study Cross-references: | |||||||
tmp_3_17196034_T_A | 212 | T>S | 1000Genomes | ||||
Consequence: missense Predictions: - SIFT: tolerated (0.09) Somatic: No Accession: 3:g.17196034T>A Codon: ACA/TCA Consequence type: missense Cytogenetic band: Genomic location: 3:g.17196034T>A Locations: - p.Thr212Ser (EnsemblPlants:AT3G46680.1) - c.634A>T (EnsemblPlants:AT3G46680.1) Source type: large scale study Cross-references: | |||||||
tmp_3_17196015_C_A | 218 | S>I | 1000Genomes | ||||
Consequence: missense Predictions: - SIFT: tolerated (0.06) Somatic: No Accession: 3:g.17196015C>A Codon: AGC/ATC Consequence type: missense Cytogenetic band: Genomic location: 3:g.17196015C>A Locations: - p.Ser218Ile (EnsemblPlants:AT3G46680.1) - c.653G>T (EnsemblPlants:AT3G46680.1) Source type: large scale study Cross-references: | |||||||
ENSVATH06251032 | 219 | S>L | 1000Genomes | ||||
Consequence: missense Predictions: - SIFT: tolerated (0.1) Somatic: No Accession: 3:g.17196012G>A Codon: TCG/TTG Consequence type: missense Cytogenetic band: Genomic location: 3:g.17196012G>A Locations: - p.Ser219Leu (EnsemblPlants:AT3G46680.1) - c.656C>T (EnsemblPlants:AT3G46680.1) Source type: large scale study Cross-references: | |||||||
ENSVATH00403446 | 222 | K>E | 1000Genomes | ||||
Consequence: missense Predictions: - SIFT: tolerated (0.49) Somatic: No Accession: 3:g.17196004T>C Codon: AAA/GAA Consequence type: missense Cytogenetic band: Genomic location: 3:g.17196004T>C Locations: - p.Lys222Glu (EnsemblPlants:AT3G46680.1) - c.664A>G (EnsemblPlants:AT3G46680.1) Source type: large scale study Cross-references: | |||||||
ENSVATH12579365 | 222 | K>N | 1000Genomes | ||||
Consequence: missense Predictions: - SIFT: tolerated (0.11) Somatic: No Accession: 3:g.17196002T>A Codon: AAA/AAT Consequence type: missense Cytogenetic band: Genomic location: 3:g.17196002T>A Locations: - p.Lys222Asn (EnsemblPlants:AT3G46680.1) - c.666A>T (EnsemblPlants:AT3G46680.1) Source type: large scale study Cross-references: | |||||||
ENSVATH14385449 | 223 | R>H | 1000Genomes | ||||
Consequence: missense Predictions: - SIFT: tolerated (0.25) Somatic: No Accession: 3:g.17196000C>T Codon: CGT/CAT Consequence type: missense Cytogenetic band: Genomic location: 3:g.17196000C>T Locations: - p.Arg223His (EnsemblPlants:AT3G46680.1) - c.668G>A (EnsemblPlants:AT3G46680.1) Source type: large scale study Cross-references: | |||||||
ENSVATH14385450 | 223 | R>S | 1000Genomes | ||||
Consequence: missense Predictions: - SIFT: tolerated (0.22) Somatic: No Accession: 3:g.17196001G>T Codon: CGT/AGT Consequence type: missense Cytogenetic band: Genomic location: 3:g.17196001G>T Locations: - p.Arg223Ser (EnsemblPlants:AT3G46680.1) - c.667C>A (EnsemblPlants:AT3G46680.1) Source type: large scale study Cross-references: | |||||||
tmp_3_17195980_T_G | 230 | I>L | 1000Genomes | ||||
Consequence: missense Predictions: - SIFT: deleterious (0.05) Somatic: No Accession: 3:g.17195980T>G Codon: ATT/CTT Consequence type: missense Cytogenetic band: Genomic location: 3:g.17195980T>G Locations: - p.Ile230Leu (EnsemblPlants:AT3G46680.1) - c.688A>C (EnsemblPlants:AT3G46680.1) Source type: large scale study Cross-references: | |||||||
ENSVATH06251031 | 231 | P>L | 1000Genomes | ||||
Consequence: missense Predictions: - SIFT: deleterious (0) Somatic: No Accession: 3:g.17195976G>A Codon: CCG/CTG Consequence type: missense Cytogenetic band: Genomic location: 3:g.17195976G>A Locations: - p.Pro231Leu (EnsemblPlants:AT3G46680.1) - c.692C>T (EnsemblPlants:AT3G46680.1) Source type: large scale study Cross-references: | |||||||
ENSVATH06251031 | 231 | P>R | 1000Genomes | ||||
Consequence: missense Predictions: - SIFT: deleterious (0.04) Somatic: No Accession: 3:g.17195976G>C Codon: CCG/CGG Consequence type: missense Cytogenetic band: Genomic location: 3:g.17195976G>C Locations: - p.Pro231Arg (EnsemblPlants:AT3G46680.1) - c.692C>G (EnsemblPlants:AT3G46680.1) Source type: large scale study Cross-references: | |||||||
ENSVATH06251029 | 233 | Y>N | 1000Genomes | ||||
Consequence: missense Predictions: - SIFT: deleterious (0) Somatic: No Accession: 3:g.17195971A>T Codon: TAC/AAC Consequence type: missense Cytogenetic band: Genomic location: 3:g.17195971A>T Locations: - p.Tyr233Asn (EnsemblPlants:AT3G46680.1) - c.697T>A (EnsemblPlants:AT3G46680.1) Source type: large scale study Cross-references: | |||||||
ENSVATH06251028 | 235 | L>F | 1000Genomes | ||||
Consequence: missense Predictions: - SIFT: deleterious (0) Somatic: No Accession: 3:g.17195963T>A Codon: TTA/TTT Consequence type: missense Cytogenetic band: Genomic location: 3:g.17195963T>A Locations: - p.Leu235Phe (EnsemblPlants:AT3G46680.1) - c.705A>T (EnsemblPlants:AT3G46680.1) Source type: large scale study Cross-references: | |||||||
tmp_3_17195959_G_C | 237 | P>A | 1000Genomes | ||||
Consequence: missense Predictions: - SIFT: deleterious (0) Somatic: No Accession: 3:g.17195959G>C Codon: CCT/GCT Consequence type: missense Cytogenetic band: Genomic location: 3:g.17195959G>C Locations: - p.Pro237Ala (EnsemblPlants:AT3G46680.1) - c.709C>G (EnsemblPlants:AT3G46680.1) Source type: large scale study Cross-references: | |||||||
tmp_3_17195955_A_T | 238 | L>H | 1000Genomes | ||||
Consequence: missense Predictions: - SIFT: deleterious (0) Somatic: No Accession: 3:g.17195955A>T Codon: CTT/CAT Consequence type: missense Cytogenetic band: Genomic location: 3:g.17195955A>T Locations: - p.Leu238His (EnsemblPlants:AT3G46680.1) - c.713T>A (EnsemblPlants:AT3G46680.1) Source type: large scale study Cross-references: | |||||||
ENSVATH06251027 | 252 | D>A | 1000Genomes | ||||
Consequence: missense Predictions: - SIFT: deleterious (0) Somatic: No Accession: 3:g.17195913T>G Codon: GAC/GCC Consequence type: missense Cytogenetic band: Genomic location: 3:g.17195913T>G Locations: - p.Asp252Ala (EnsemblPlants:AT3G46680.1) - c.755A>C (EnsemblPlants:AT3G46680.1) Source type: large scale study Cross-references: | |||||||
tmp_3_17195911_T_A | 253 | R>W | 1000Genomes | ||||
Consequence: missense Predictions: - SIFT: deleterious (0.05) Somatic: No Accession: 3:g.17195911T>A Codon: AGG/TGG Consequence type: missense Cytogenetic band: Genomic location: 3:g.17195911T>A Locations: - p.Arg253Trp (EnsemblPlants:AT3G46680.1) - c.757A>T (EnsemblPlants:AT3G46680.1) Source type: large scale study Cross-references: | |||||||
tmp_3_17195907_C_A | 254 | S>I | 1000Genomes | ||||
Consequence: missense Predictions: - SIFT: deleterious (0) Somatic: No Accession: 3:g.17195907C>A Codon: AGC/ATC Consequence type: missense Cytogenetic band: Genomic location: 3:g.17195907C>A Locations: - p.Ser254Ile (EnsemblPlants:AT3G46680.1) - c.761G>T (EnsemblPlants:AT3G46680.1) Source type: large scale study Cross-references: | |||||||
ENSVATH02453416 | 256 | V>I | 1000Genomes | ||||
Consequence: missense Predictions: - SIFT: tolerated (1) Somatic: No Accession: 3:g.17195902C>T Codon: GTT/ATT Consequence type: missense Cytogenetic band: Genomic location: 3:g.17195902C>T Locations: - p.Val256Ile (EnsemblPlants:AT3G46680.1) - c.766G>A (EnsemblPlants:AT3G46680.1) Source type: large scale study Cross-references: | |||||||
ENSVATH02453415 | 258 | W>* | 1000Genomes | ||||
Consequence: stop gained Somatic: No Accession: 3:g.17195895C>T Codon: TGG/TAG Consequence type: stop gained Cytogenetic band: Genomic location: 3:g.17195895C>T Locations: - p.Trp258Ter (EnsemblPlants:AT3G46680.1) - c.773G>A (EnsemblPlants:AT3G46680.1) Source type: large scale study Cross-references: | |||||||
ENSVATH06251026 | 264 | P>S | 1000Genomes | ||||
Consequence: missense Predictions: - SIFT: tolerated (0.28) Somatic: No Accession: 3:g.17195878G>A Codon: CCG/TCG Consequence type: missense Cytogenetic band: Genomic location: 3:g.17195878G>A Locations: - p.Pro264Ser (EnsemblPlants:AT3G46680.1) - c.790C>T (EnsemblPlants:AT3G46680.1) Source type: large scale study Cross-references: | |||||||
ENSVATH14385448 | 266 | S>A | 1000Genomes | ||||
Consequence: missense Predictions: - SIFT: deleterious (0.01) Somatic: No Accession: 3:g.17195872A>C Codon: TCA/GCA Consequence type: missense Cytogenetic band: Genomic location: 3:g.17195872A>C Locations: - p.Ser266Ala (EnsemblPlants:AT3G46680.1) - c.796T>G (EnsemblPlants:AT3G46680.1) Source type: large scale study Cross-references: | |||||||
ENSVATH00403445 | 268 | V>G | 1000Genomes | ||||
Consequence: missense Predictions: - SIFT: deleterious (0) Somatic: No Accession: 3:g.17195865A>C Codon: GTT/GGT Consequence type: missense Cytogenetic band: Genomic location: 3:g.17195865A>C Locations: - p.Val268Gly (EnsemblPlants:AT3G46680.1) - c.803T>G (EnsemblPlants:AT3G46680.1) Source type: large scale study Cross-references: | |||||||
tmp_3_17195866_C_T | 268 | V>I | 1000Genomes | ||||
Consequence: missense Predictions: - SIFT: tolerated (1) Somatic: No Accession: 3:g.17195866C>T Codon: GTT/ATT Consequence type: missense Cytogenetic band: Genomic location: 3:g.17195866C>T Locations: - p.Val268Ile (EnsemblPlants:AT3G46680.1) - c.802G>A (EnsemblPlants:AT3G46680.1) Source type: large scale study Cross-references: | |||||||
tmp_3_17195834_C_T | 278 | M>I | 1000Genomes | ||||
Consequence: missense Predictions: - SIFT: tolerated (0.44) Somatic: No Accession: 3:g.17195834C>T Codon: ATG/ATA Consequence type: missense Cytogenetic band: Genomic location: 3:g.17195834C>T Locations: - p.Met278Ile (EnsemblPlants:AT3G46680.1) - c.834G>A (EnsemblPlants:AT3G46680.1) Source type: large scale study Cross-references: | |||||||
tmp_3_17195835_A_G | 278 | M>T | 1000Genomes | ||||
Consequence: missense Predictions: - SIFT: deleterious (0.04) Somatic: No Accession: 3:g.17195835A>G Codon: ATG/ACG Consequence type: missense Cytogenetic band: Genomic location: 3:g.17195835A>G Locations: - p.Met278Thr (EnsemblPlants:AT3G46680.1) - c.833T>C (EnsemblPlants:AT3G46680.1) Source type: large scale study Cross-references: | |||||||
tmp_3_17195831_T_G | 279 | E>D | 1000Genomes | ||||
Consequence: missense Predictions: - SIFT: tolerated (0.6) Somatic: No Accession: 3:g.17195831T>G Codon: GAA/GAC Consequence type: missense Cytogenetic band: Genomic location: 3:g.17195831T>G Locations: - p.Glu279Asp (EnsemblPlants:AT3G46680.1) - c.837A>C (EnsemblPlants:AT3G46680.1) Source type: large scale study Cross-references: | |||||||
tmp_3_17195833_C_T | 279 | E>K | 1000Genomes | ||||
Consequence: missense Predictions: - SIFT: tolerated (0.14) Somatic: No Accession: 3:g.17195833C>T Codon: GAA/AAA Consequence type: missense Cytogenetic band: Genomic location: 3:g.17195833C>T Locations: - p.Glu279Lys (EnsemblPlants:AT3G46680.1) - c.835G>A (EnsemblPlants:AT3G46680.1) Source type: large scale study Cross-references: | |||||||
ENSVATH14385445 | 288 | R>Q | 1000Genomes | ||||
Consequence: missense Predictions: - SIFT: deleterious (0.04) Somatic: No Accession: 3:g.17195805C>T Codon: CGG/CAG Consequence type: missense Cytogenetic band: Genomic location: 3:g.17195805C>T Locations: - p.Arg288Gln (EnsemblPlants:AT3G46680.1) - c.863G>A (EnsemblPlants:AT3G46680.1) Source type: large scale study Cross-references: | |||||||
tmp_3_17195806_GAGCCATCTCT_AAGCCATCTCT,G | 288 | R>W | 1000Genomes | ||||
Consequence: missense Somatic: No Accession: 3:g.17195806delGinsA Codon: TTAGAGATGGCTCGG/TTAGAGATGGCTTGG Consequence type: missense Cytogenetic band: Genomic location: 3:g.17195806delGinsA Locations: - p.Arg288Trp (EnsemblPlants:AT3G46680.1) - c.862delCinsT (EnsemblPlants:AT3G46680.1) Source type: large scale study Cross-references: | |||||||
tmp_3_17195797_A_G | 291 | F>L | 1000Genomes | ||||
Consequence: missense Predictions: - SIFT: tolerated (0.15) Somatic: No Accession: 3:g.17195797A>G Codon: TTT/CTT Consequence type: missense Cytogenetic band: Genomic location: 3:g.17195797A>G Locations: - p.Phe291Leu (EnsemblPlants:AT3G46680.1) - c.871T>C (EnsemblPlants:AT3G46680.1) Source type: large scale study Cross-references: | |||||||
ENSVATH06251023 | 291 | F>S | 1000Genomes | ||||
Consequence: missense Predictions: - SIFT: tolerated (0.34) Somatic: No Accession: 3:g.17195796A>G Codon: TTT/TCT Consequence type: missense Cytogenetic band: Genomic location: 3:g.17195796A>G Locations: - p.Phe291Ser (EnsemblPlants:AT3G46680.1) - c.872T>C (EnsemblPlants:AT3G46680.1) Source type: large scale study Cross-references: | |||||||
tmp_3_17195782_G_T | 296 | P>T | 1000Genomes | ||||
Consequence: missense Predictions: - SIFT: deleterious (0.01) Somatic: No Accession: 3:g.17195782G>T Codon: CCT/ACT Consequence type: missense Cytogenetic band: Genomic location: 3:g.17195782G>T Locations: - p.Pro296Thr (EnsemblPlants:AT3G46680.1) - c.886C>A (EnsemblPlants:AT3G46680.1) Source type: large scale study Cross-references: | |||||||
ENSVATH06251022 | 298 | L>V | 1000Genomes | ||||
Consequence: missense Predictions: - SIFT: deleterious (0) Somatic: No Accession: 3:g.17195776A>C Codon: TTA/GTA Consequence type: missense Cytogenetic band: Genomic location: 3:g.17195776A>C Locations: - p.Leu298Val (EnsemblPlants:AT3G46680.1) - c.892T>G (EnsemblPlants:AT3G46680.1) Source type: large scale study Cross-references: | |||||||
tmp_3_17195764_G_A | 302 | R>W | 1000Genomes | ||||
Consequence: missense Predictions: - SIFT: deleterious (0) Somatic: No Accession: 3:g.17195764G>A Codon: CGG/TGG Consequence type: missense Cytogenetic band: Genomic location: 3:g.17195764G>A Locations: - p.Arg302Trp (EnsemblPlants:AT3G46680.1) - c.904C>T (EnsemblPlants:AT3G46680.1) Source type: large scale study Cross-references: | |||||||
ENSVATH00403444 | 305 | S>C | 1000Genomes | ||||
Consequence: missense Predictions: - SIFT: deleterious (0) Somatic: No Accession: 3:g.17195754G>C Codon: TCT/TGT Consequence type: missense Cytogenetic band: Genomic location: 3:g.17195754G>C Locations: - p.Ser305Cys (EnsemblPlants:AT3G46680.1) - c.914C>G (EnsemblPlants:AT3G46680.1) Source type: large scale study Cross-references: | |||||||
ENSVATH06251020 | 317 | E>K | 1000Genomes | ||||
Consequence: missense Predictions: - SIFT: tolerated (0.15) Somatic: No Accession: 3:g.17195719C>T Codon: GAG/AAG Consequence type: missense Cytogenetic band: Genomic location: 3:g.17195719C>T Locations: - p.Glu317Lys (EnsemblPlants:AT3G46680.1) - c.949G>A (EnsemblPlants:AT3G46680.1) Source type: large scale study Cross-references: | |||||||
ENSVATH00403443 | 318 | E>D | Plants were checked bi-weekly for presence of first buds and the average flowering time of 4 plants of the same accession were collected [22c and 16 hrs daylight] (EnsemblGenome) Plants were checked bi-weekly for presence of first buds and the average leaf number at flowering time of 4 plants of the same accession were collected [22c and 16 hrs daylight] (EnsemblGenome) | 1000Genomes | |||
Consequence: missense Predictions: - SIFT: tolerated (0.39) Somatic: No Accession: 3:g.17195714T>A Codon: GAA/GAT Consequence type: missense Cytogenetic band: Genomic location: 3:g.17195714T>A Locations: - p.Glu318Asp (EnsemblPlants:AT3G46680.1) - c.954A>T (EnsemblPlants:AT3G46680.1) Source type: large scale study Cross-references: | |||||||
ENSVATH06251019 | 319 | V>F | 1000Genomes | ||||
Consequence: missense Predictions: - SIFT: tolerated (1) Somatic: No Accession: 3:g.17195713C>A Codon: GTC/TTC Consequence type: missense Cytogenetic band: Genomic location: 3:g.17195713C>A Locations: - p.Val319Phe (EnsemblPlants:AT3G46680.1) - c.955G>T (EnsemblPlants:AT3G46680.1) Source type: large scale study Cross-references: | |||||||
ENSVATH06251018 | 323 | V>I | 1000Genomes | ||||
Consequence: missense Predictions: - SIFT: tolerated (0.22) Somatic: No Accession: 3:g.17195701C>T Codon: GTC/ATC Consequence type: missense Cytogenetic band: Genomic location: 3:g.17195701C>T Locations: - p.Val323Ile (EnsemblPlants:AT3G46680.1) - c.967G>A (EnsemblPlants:AT3G46680.1) Source type: large scale study Cross-references: | |||||||
tmp_3_17195684_A_C | 328 | Y>* | 1000Genomes | ||||
Consequence: stop gained Somatic: No Accession: 3:g.17195684A>C Codon: TAT/TAG Consequence type: stop gained Cytogenetic band: Genomic location: 3:g.17195684A>C Locations: - p.Tyr328Ter (EnsemblPlants:AT3G46680.1) - c.984T>G (EnsemblPlants:AT3G46680.1) Source type: large scale study Cross-references: | |||||||
tmp_3_17195682_A_G | 329 | I>T | 1000Genomes | ||||
Consequence: missense Predictions: - SIFT: deleterious (0) Somatic: No Accession: 3:g.17195682A>G Codon: ATT/ACT Consequence type: missense Cytogenetic band: Genomic location: 3:g.17195682A>G Locations: - p.Ile329Thr (EnsemblPlants:AT3G46680.1) - c.986T>C (EnsemblPlants:AT3G46680.1) Source type: large scale study Cross-references: | |||||||
ENSVATH06251017 | 333 | A>P | 1000Genomes | ||||
Consequence: missense Predictions: - SIFT: deleterious (0) Somatic: No Accession: 3:g.17195671C>G Codon: GCA/CCA Consequence type: missense Cytogenetic band: Genomic location: 3:g.17195671C>G Locations: - p.Ala333Pro (EnsemblPlants:AT3G46680.1) - c.997G>C (EnsemblPlants:AT3G46680.1) Source type: large scale study Cross-references: | |||||||
tmp_3_17195634_C_A | 345 | G>V | 1000Genomes | ||||
Consequence: missense Predictions: - SIFT: deleterious (0) Somatic: No Accession: 3:g.17195634C>A Codon: GGA/GTA Consequence type: missense Cytogenetic band: Genomic location: 3:g.17195634C>A Locations: - p.Gly345Val (EnsemblPlants:AT3G46680.1) - c.1034G>T (EnsemblPlants:AT3G46680.1) Source type: large scale study Cross-references: | |||||||
ENSVATH06251015 | 348 | W>* | 1000Genomes | ||||
Consequence: stop gained Somatic: No Accession: 3:g.17195625C>T Codon: TGG/TAG Consequence type: stop gained Cytogenetic band: Genomic location: 3:g.17195625C>T Locations: - p.Trp348Ter (EnsemblPlants:AT3G46680.1) - c.1043G>A (EnsemblPlants:AT3G46680.1) Source type: large scale study Cross-references: | |||||||
tmp_3_17195610_C_T | 353 | W>* | 1000Genomes | ||||
Consequence: stop gained Somatic: No Accession: 3:g.17195610C>T Codon: TGG/TAG Consequence type: stop gained Cytogenetic band: Genomic location: 3:g.17195610C>T Locations: - p.Trp353Ter (EnsemblPlants:AT3G46680.1) - c.1058G>A (EnsemblPlants:AT3G46680.1) Source type: large scale study Cross-references: | |||||||
ENSVATH14385443 | 356 | T>K | 1000Genomes | ||||
Consequence: missense Predictions: - SIFT: deleterious (0) Somatic: No Accession: 3:g.17195601G>T Codon: ACG/AAG Consequence type: missense Cytogenetic band: Genomic location: 3:g.17195601G>T Locations: - p.Thr356Lys (EnsemblPlants:AT3G46680.1) - c.1067C>A (EnsemblPlants:AT3G46680.1) Source type: large scale study Cross-references: | |||||||
ENSVATH14385442 | 359 | S>I | 1000Genomes | ||||
Consequence: missense Predictions: - SIFT: deleterious (0) Somatic: No Accession: 3:g.17195592C>A Codon: AGC/ATC Consequence type: missense Cytogenetic band: Genomic location: 3:g.17195592C>A Locations: - p.Ser359Ile (EnsemblPlants:AT3G46680.1) - c.1076G>T (EnsemblPlants:AT3G46680.1) Source type: large scale study Cross-references: | |||||||
tmp_3_17195575_G_A | 365 | P>S | 1000Genomes | ||||
Consequence: missense Predictions: - SIFT: deleterious (0) Somatic: No Accession: 3:g.17195575G>A Codon: CCA/TCA Consequence type: missense Cytogenetic band: Genomic location: 3:g.17195575G>A Locations: - p.Pro365Ser (EnsemblPlants:AT3G46680.1) - c.1093C>T (EnsemblPlants:AT3G46680.1) Source type: large scale study Cross-references: | |||||||
ENSVATH12579332 | 369 | R>S | 1000Genomes | ||||
Consequence: missense Predictions: - SIFT: deleterious (0) Somatic: No Accession: 3:g.17195561C>A Codon: AGG/AGT Consequence type: missense Cytogenetic band: Genomic location: 3:g.17195561C>A Locations: - p.Arg369Ser (EnsemblPlants:AT3G46680.1) - c.1107G>T (EnsemblPlants:AT3G46680.1) Source type: large scale study Cross-references: | |||||||
tmp_3_17195546_C_G | 374 | E>D | 1000Genomes | ||||
Consequence: missense Predictions: - SIFT: tolerated (1) Somatic: No Accession: 3:g.17195546C>G Codon: GAG/GAC Consequence type: missense Cytogenetic band: Genomic location: 3:g.17195546C>G Locations: - p.Glu374Asp (EnsemblPlants:AT3G46680.1) - c.1122G>C (EnsemblPlants:AT3G46680.1) Source type: large scale study Cross-references: | |||||||
tmp_3_17195532_G_A | 379 | A>V | 1000Genomes | ||||
Consequence: missense Predictions: - SIFT: deleterious (0.01) Somatic: No Accession: 3:g.17195532G>A Codon: GCA/GTA Consequence type: missense Cytogenetic band: Genomic location: 3:g.17195532G>A Locations: - p.Ala379Val (EnsemblPlants:AT3G46680.1) - c.1136C>T (EnsemblPlants:AT3G46680.1) Source type: large scale study Cross-references: | |||||||
tmp_3_17195518_T_A | 384 | S>C | 1000Genomes | ||||
Consequence: missense Predictions: - SIFT: tolerated (0.38) Somatic: No Accession: 3:g.17195518T>A Codon: AGT/TGT Consequence type: missense Cytogenetic band: Genomic location: 3:g.17195518T>A Locations: - p.Ser384Cys (EnsemblPlants:AT3G46680.1) - c.1150A>T (EnsemblPlants:AT3G46680.1) Source type: large scale study Cross-references: | |||||||
ENSVATH06251014 | 386 | W>* | 1000Genomes | ||||
Consequence: stop gained Somatic: No Accession: 3:g.17195510C>T Codon: TGG/TGA Consequence type: stop gained Cytogenetic band: Genomic location: 3:g.17195510C>T Locations: - p.Trp386Ter (EnsemblPlants:AT3G46680.1) - c.1158G>A (EnsemblPlants:AT3G46680.1) Source type: large scale study Cross-references: | |||||||
ENSVATH06251012 | 395 | K>E | 1000Genomes | ||||
Consequence: missense Predictions: - SIFT: tolerated (1) Somatic: No Accession: 3:g.17195485T>C Codon: AAG/GAG Consequence type: missense Cytogenetic band: Genomic location: 3:g.17195485T>C Locations: - p.Lys395Glu (EnsemblPlants:AT3G46680.1) - c.1183A>G (EnsemblPlants:AT3G46680.1) Source type: large scale study Cross-references: | |||||||
ENSVATH00403442 | 395 | K>M | 1000Genomes | ||||
Consequence: missense Predictions: - SIFT: deleterious (0.05) Somatic: No Accession: 3:g.17195484T>A Codon: AAG/ATG Consequence type: missense Cytogenetic band: Genomic location: 3:g.17195484T>A Locations: - p.Lys395Met (EnsemblPlants:AT3G46680.1) - c.1184A>T (EnsemblPlants:AT3G46680.1) Source type: large scale study Cross-references: | |||||||
ENSVATH00403442 | 395 | K>T | 1000Genomes | ||||
Consequence: missense Predictions: - SIFT: deleterious (0.01) Somatic: No Accession: 3:g.17195484T>G Codon: AAG/ACG Consequence type: missense Cytogenetic band: Genomic location: 3:g.17195484T>G Locations: - p.Lys395Thr (EnsemblPlants:AT3G46680.1) - c.1184A>C (EnsemblPlants:AT3G46680.1) Source type: large scale study Cross-references: | |||||||
ENSVATH06251011 | 400 | G>E | 1000Genomes | ||||
Consequence: missense Predictions: - SIFT: tolerated (1) Somatic: No Accession: 3:g.17195469C>T Codon: GGG/GAG Consequence type: missense Cytogenetic band: Genomic location: 3:g.17195469C>T Locations: - p.Gly400Glu (EnsemblPlants:AT3G46680.1) - c.1199G>A (EnsemblPlants:AT3G46680.1) Source type: large scale study Cross-references: | |||||||
ENSVATH12579331 | 407 | R>K | 1000Genomes | ||||
Consequence: missense Predictions: - SIFT: tolerated (0.2) Somatic: No Accession: 3:g.17195448C>T Codon: AGG/AAG Consequence type: missense Cytogenetic band: Genomic location: 3:g.17195448C>T Locations: - p.Arg407Lys (EnsemblPlants:AT3G46680.1) - c.1220G>A (EnsemblPlants:AT3G46680.1) Source type: large scale study Cross-references: | |||||||
tmp_3_17195434_C_T | 412 | E>K | 1000Genomes | ||||
Consequence: missense Predictions: - SIFT: tolerated (0.35) Somatic: No Accession: 3:g.17195434C>T Codon: GAA/AAA Consequence type: missense Cytogenetic band: Genomic location: 3:g.17195434C>T Locations: - p.Glu412Lys (EnsemblPlants:AT3G46680.1) - c.1234G>A (EnsemblPlants:AT3G46680.1) Source type: large scale study Cross-references: | |||||||
ENSVATH06251010 | 414 | G>C | 1000Genomes | ||||
Consequence: missense Predictions: - SIFT: deleterious (0) Somatic: No Accession: 3:g.17195428C>A Codon: GGT/TGT Consequence type: missense Cytogenetic band: Genomic location: 3:g.17195428C>A Locations: - p.Gly414Cys (EnsemblPlants:AT3G46680.1) - c.1240G>T (EnsemblPlants:AT3G46680.1) Source type: large scale study Cross-references: | |||||||
tmp_3_17195427_C_T | 414 | G>D | 1000Genomes | ||||
Consequence: missense Predictions: - SIFT: deleterious (0) Somatic: No Accession: 3:g.17195427C>T Codon: GGT/GAT Consequence type: missense Cytogenetic band: Genomic location: 3:g.17195427C>T Locations: - p.Gly414Asp (EnsemblPlants:AT3G46680.1) - c.1241G>A (EnsemblPlants:AT3G46680.1) Source type: large scale study Cross-references: | |||||||
tmp_3_17195424_G_A,T | 415 | A>E | 1000Genomes | ||||
Consequence: missense Predictions: - SIFT: tolerated (1) Somatic: No Accession: 3:g.17195424G>T Codon: GCA/GAA Consequence type: missense Cytogenetic band: Genomic location: 3:g.17195424G>T Locations: - p.Ala415Glu (EnsemblPlants:AT3G46680.1) - c.1244C>A (EnsemblPlants:AT3G46680.1) Source type: large scale study Cross-references: | |||||||
tmp_3_17195424_G_A,T | 415 | A>V | 1000Genomes | ||||
Consequence: missense Predictions: - SIFT: tolerated (0.19) Somatic: No Accession: 3:g.17195424G>A Codon: GCA/GTA Consequence type: missense Cytogenetic band: Genomic location: 3:g.17195424G>A Locations: - p.Ala415Val (EnsemblPlants:AT3G46680.1) - c.1244C>T (EnsemblPlants:AT3G46680.1) Source type: large scale study Cross-references: | |||||||
ENSVATH06251008 | 416 | D>N | 1000Genomes | ||||
Consequence: missense Predictions: - SIFT: tolerated (0.25) Somatic: No Accession: 3:g.17195422C>T Codon: GAC/AAC Consequence type: missense Cytogenetic band: Genomic location: 3:g.17195422C>T Locations: - p.Asp416Asn (EnsemblPlants:AT3G46680.1) - c.1246G>A (EnsemblPlants:AT3G46680.1) Source type: large scale study Cross-references: | |||||||
ENSVATH00403441 | 419 | E>K | 1000Genomes | ||||
Consequence: missense Predictions: - SIFT: tolerated (1) Somatic: No Accession: 3:g.17195413C>T Codon: GAG/AAG Consequence type: missense Cytogenetic band: Genomic location: 3:g.17195413C>T Locations: - p.Glu419Lys (EnsemblPlants:AT3G46680.1) - c.1255G>A (EnsemblPlants:AT3G46680.1) Source type: large scale study Cross-references: | |||||||
tmp_3_17195406_GCT_ACT,GCTCT,G | 421 | A>V | 1000Genomes | ||||
Consequence: missense Somatic: No Accession: 3:g.17195406delGinsA Codon: AGAGCC/AGAGTC Consequence type: missense Cytogenetic band: Genomic location: 3:g.17195406delGinsA Locations: - p.Ala421Val (EnsemblPlants:AT3G46680.1) - c.1262delCinsT (EnsemblPlants:AT3G46680.1) Source type: large scale study Cross-references: | |||||||
tmp_3_17195404_G_A | 422 | L>F | 1000Genomes | ||||
Consequence: missense Predictions: - SIFT: tolerated (0.36) Somatic: No Accession: 3:g.17195404G>A Codon: CTT/TTT Consequence type: missense Cytogenetic band: Genomic location: 3:g.17195404G>A Locations: - p.Leu422Phe (EnsemblPlants:AT3G46680.1) - c.1264C>T (EnsemblPlants:AT3G46680.1) Source type: large scale study Cross-references: | |||||||
ENSVATH06251006 | 427 | N>K | 1000Genomes | ||||
Consequence: missense Predictions: - SIFT: tolerated (1) Somatic: No Accession: 3:g.17195387A>C Codon: AAT/AAG Consequence type: missense Cytogenetic band: Genomic location: 3:g.17195387A>C Locations: - p.Asn427Lys (EnsemblPlants:AT3G46680.1) - c.1281T>G (EnsemblPlants:AT3G46680.1) Source type: large scale study Cross-references: | |||||||
ENSVATH06251005 | 431 | S>T | 1000Genomes | ||||
Consequence: missense Predictions: - SIFT: tolerated (0.08) Somatic: No Accession: 3:g.17195377A>T Codon: TCT/ACT Consequence type: missense Cytogenetic band: Genomic location: 3:g.17195377A>T Locations: - p.Ser431Thr (EnsemblPlants:AT3G46680.1) - c.1291T>A (EnsemblPlants:AT3G46680.1) Source type: large scale study Cross-references: | |||||||
ENSVATH06251004 | 434 | N>S | 1000Genomes | ||||
Consequence: missense Predictions: - SIFT: tolerated (1) Somatic: No Accession: 3:g.17195367T>C Codon: AAT/AGT Consequence type: missense Cytogenetic band: Genomic location: 3:g.17195367T>C Locations: - p.Asn434Ser (EnsemblPlants:AT3G46680.1) - c.1301A>G (EnsemblPlants:AT3G46680.1) Source type: large scale study Cross-references: | |||||||
tmp_3_17195356_A_G | 438 | S>P | 1000Genomes | ||||
Consequence: missense Predictions: - SIFT: deleterious (0) Somatic: No Accession: 3:g.17195356A>G Codon: TCA/CCA Consequence type: missense Cytogenetic band: Genomic location: 3:g.17195356A>G Locations: - p.Ser438Pro (EnsemblPlants:AT3G46680.1) - c.1312T>C (EnsemblPlants:AT3G46680.1) Source type: large scale study Cross-references: | |||||||
ENSVATH06251003 | 439 | Y>H | 1000Genomes | ||||
Consequence: missense Predictions: - SIFT: tolerated (0.36) Somatic: No Accession: 3:g.17195353A>G Codon: TAC/CAC Consequence type: missense Cytogenetic band: Genomic location: 3:g.17195353A>G Locations: - p.Tyr439His (EnsemblPlants:AT3G46680.1) - c.1315T>C (EnsemblPlants:AT3G46680.1) Source type: large scale study Cross-references: | |||||||
tmp_3_17195350_T_C | 440 | N>D | 1000Genomes | ||||
Consequence: missense Predictions: - SIFT: tolerated (0.08) Somatic: No Accession: 3:g.17195350T>C Codon: AAC/GAC Consequence type: missense Cytogenetic band: Genomic location: 3:g.17195350T>C Locations: - p.Asn440Asp (EnsemblPlants:AT3G46680.1) - c.1318A>G (EnsemblPlants:AT3G46680.1) Source type: large scale study Cross-references: | |||||||
ENSVATH14385440 | 446 | V>I | 1000Genomes | ||||
Consequence: missense Predictions: - SIFT: tolerated (0.11) Somatic: No Accession: 3:g.17195332C>T Codon: GTT/ATT Consequence type: missense Cytogenetic band: Genomic location: 3:g.17195332C>T Locations: - p.Val446Ile (EnsemblPlants:AT3G46680.1) - c.1336G>A (EnsemblPlants:AT3G46680.1) Source type: large scale study Cross-references: |