Q9S7H5 · SCL21_ARATH

Function

function

Probable transcription factor involved in plant development.

GO annotations

all annotationsall molecular functionnucleotide bindingmolecular_functionnucleic acid bindingdna bindingchromatin bindingdna-binding transcription factor activityrna bindingcytoskeletal motor activitycatalytic activitynuclease activitysignaling receptor bindingstructural molecule activitytransporter activitybindingprotein bindingtranslation factor activity, rna bindinglipid bindingkinase activitytransferase activityhydrolase activityoxygen bindingenzyme regulator activitycarbohydrate bindingsignaling receptor activitytranslation regulator activitytranscription regulator activityother molecular functionall biological processcarbohydrate metabolic processgeneration of precursor metabolites and energynucleobase-containing compound metabolic processdna metabolic processtranslationlipid metabolic processtransportresponse to stresscell cyclecell communicationsignal transductioncell-cell signalingmulticellular organism developmentcircadian rhythmbiological_processmetabolic processcatabolic processbiosynthetic processresponse to light stimulusresponse to external stimulustropismresponse to biotic stimulusresponse to abiotic stimulusresponse to endogenous stimulusembryo developmentpost-embryonic developmentfruit ripeningabscissionpollinationflower developmentcellular processprogrammed cell deathphotosynthesiscellular component organizationcell growthprotein metabolic processcellular homeostasissecondary metabolic processreproductive processcell differentiationprotein modification processgrowthepigenetic regulation of gene expressionresponse to chemicalanatomical structure developmentregulation of molecular functionother biological processall cellular componentcellular_componentextracellular regioncell wallintracellular anatomical structurenucleusnuclear envelopenucleoplasmnucleoluscytoplasmmitochondrionlysosomeendosomevacuoleperoxisomeendoplasmic reticulumgolgi apparatuscytosolribosomecytoskeletonplasma membranechloroplastplastidthylakoidmembraneexternal encapsulating structureother cellular component
Cell color indicative of number of GO terms
AspectTerm
Cellular Componentnucleus
Molecular FunctionDNA-binding transcription factor activity
Biological Processregulation of DNA-templated transcription

Keywords

Names & Taxonomy

Protein names

  • Recommended name
    Scarecrow-like protein 21
  • Short names
    AtSCL21
  • Alternative names
    • GRAS family protein 11 (AtGRAS-11)

Gene names

    • Name
      SCL21
    • ORF names
      F1O13.2
    • Ordered locus names
      At2g04890

Organism names

  • Taxonomic identifier
  • Strain
    • cv. Columbia
  • Taxonomic lineage
    Eukaryota > Viridiplantae > Streptophyta > Embryophyta > Tracheophyta > Spermatophyta > Magnoliopsida > eudicotyledons > Gunneridae > Pentapetalae > rosids > malvids > Brassicales > Brassicaceae > Camelineae > Arabidopsis

Accessions

  • Primary accession
    Q9S7H5
  • Secondary accessions
    • Q67ZL8
    • Q67ZX7

Proteomes

Organism-specific databases

Genome annotation databases

Subcellular Location

Keywords

PTM/Processing

Features

Showing features for chain.

TypeIDPosition(s)Description
ChainPRO_00003508601-413Scarecrow-like protein 21

Proteomic databases

Expression

Tissue specificity

Expressed in seedlings, roots, cotyledons, leaves and flowers.

Gene expression databases

Interaction

Subunit

Interacts with Meloidogyne incognita 16D10.

Binary interactions

Protein-protein interaction databases

Structure

Family & Domains

Features

Showing features for domain, region, motif.

TypeIDPosition(s)Description
Domain41-413GRAS
Region48-108Leucine repeat I (LRI)
Region127-192VHIID
Motif158-162VHIID
Region201-233Leucine repeat II (LRII)
Region242-336PFYRE
Region339-413SAW

Sequence similarities

Belongs to the GRAS family.

Phylogenomic databases

Family and domain databases

Sequence

  • Sequence status
    Complete
  • Length
    413
  • Mass (Da)
    46,468
  • Last updated
    2000-05-01 v1
  • Checksum
    8E78B3976B0B1A5D
MDNVRGSIMLQPLPEIAESIDDAICHELSMWPDDAKDLLLIVEAISRGDLKLVLVACAKAVSENNLLMARWCMGELRGMVSISGEPIQRLGAYMLEGLVARLAASGSSIYKSLQSREPESYEFLSYVYVLHEVCPYFKFGYMSANGAIAEAMKDEERIHIIDFQIGQGSQWIALIQAFAARPGGAPNIRITGVGDGSVLVTVKKRLEKLAKKFDVPFRFNAVSRPSCEVEVENLDVRDGEALGVNFAYMLHHLPDESVSMENHRDRLLRMVKSLSPKVVTLVEQECNTNTSPFLPRFLETLSYYTAMFESIDVMLPRNHKERINIEQHCMARDVVNIIACEGAERIERHELLGKWKSRFSMAGFEPYPLSSIISATIRALLRDYSNGYAIEERDGALYLGWMDRILVSSCAWK

Features

Showing features for sequence conflict.

TypeIDPosition(s)Description
Sequence conflict27in Ref. 4; BAD94984/BAD43753
Sequence conflict338in Ref. 4; BAD94984/BAD43753

Keywords

Sequence databases

Nucleotide SequenceProtein SequenceMolecule TypeStatus
AF210732
EMBL· GenBank· DDBJ
AAF21044.1
EMBL· GenBank· DDBJ
mRNA
AC006955
EMBL· GenBank· DDBJ
AAM15339.1
EMBL· GenBank· DDBJ
Genomic DNA
AC007211
EMBL· GenBank· DDBJ
AAD25580.1
EMBL· GenBank· DDBJ
Genomic DNA
CP002685
EMBL· GenBank· DDBJ
AEC05882.1
EMBL· GenBank· DDBJ
Genomic DNA
AK175210
EMBL· GenBank· DDBJ
BAD42973.1
EMBL· GenBank· DDBJ
mRNA
AK175990
EMBL· GenBank· DDBJ
BAD43753.1
EMBL· GenBank· DDBJ
mRNA
AK176099
EMBL· GenBank· DDBJ
BAD43862.1
EMBL· GenBank· DDBJ
mRNA
AK221099
EMBL· GenBank· DDBJ
BAD94984.1
EMBL· GenBank· DDBJ
mRNA
BT026455
EMBL· GenBank· DDBJ
ABH04562.1
EMBL· GenBank· DDBJ
mRNA

Genome annotation databases

Similar Proteins

Disclaimer

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