Q9S7H5 · SCL21_ARATH
- ProteinScarecrow-like protein 21
- GeneSCL21
- StatusUniProtKB reviewed (Swiss-Prot)
- Amino acids413 (go to sequence)
- Protein existenceEvidence at protein level
- Annotation score4/5
Function
function
Probable transcription factor involved in plant development.
GO annotations
all annotations | all molecular function | nucleotide binding | molecular_function | nucleic acid binding | dna binding | chromatin binding | dna-binding transcription factor activity | rna binding | cytoskeletal motor activity | catalytic activity | nuclease activity | signaling receptor binding | structural molecule activity | transporter activity | binding | protein binding | translation factor activity, rna binding | lipid binding | kinase activity | transferase activity | hydrolase activity | oxygen binding | enzyme regulator activity | carbohydrate binding | signaling receptor activity | translation regulator activity | transcription regulator activity | other molecular function | all biological process | carbohydrate metabolic process | generation of precursor metabolites and energy | nucleobase-containing compound metabolic process | dna metabolic process | translation | lipid metabolic process | transport | response to stress | cell cycle | cell communication | signal transduction | cell-cell signaling | multicellular organism development | circadian rhythm | biological_process | metabolic process | catabolic process | biosynthetic process | response to light stimulus | response to external stimulus | tropism | response to biotic stimulus | response to abiotic stimulus | response to endogenous stimulus | embryo development | post-embryonic development | fruit ripening | abscission | pollination | flower development | cellular process | programmed cell death | photosynthesis | cellular component organization | cell growth | protein metabolic process | cellular homeostasis | secondary metabolic process | reproductive process | cell differentiation | protein modification process | growth | epigenetic regulation of gene expression | response to chemical | anatomical structure development | regulation of molecular function | other biological process | all cellular component | cellular_component | extracellular region | cell wall | intracellular anatomical structure | nucleus | nuclear envelope | nucleoplasm | nucleolus | cytoplasm | mitochondrion | lysosome | endosome | vacuole | peroxisome | endoplasmic reticulum | golgi apparatus | cytosol | ribosome | cytoskeleton | plasma membrane | chloroplast | plastid | thylakoid | membrane | external encapsulating structure | other cellular component | |||
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Aspect | Term | |
---|---|---|
Cellular Component | nucleus | |
Molecular Function | DNA-binding transcription factor activity | |
Biological Process | regulation of DNA-templated transcription |
Keywords
- Biological process
Names & Taxonomy
Protein names
- Recommended nameScarecrow-like protein 21
- Short namesAtSCL21
- Alternative names
Gene names
Organism names
- Strain
- Taxonomic lineageEukaryota > Viridiplantae > Streptophyta > Embryophyta > Tracheophyta > Spermatophyta > Magnoliopsida > eudicotyledons > Gunneridae > Pentapetalae > rosids > malvids > Brassicales > Brassicaceae > Camelineae > Arabidopsis
Accessions
- Primary accessionQ9S7H5
- Secondary accessions
Proteomes
Organism-specific databases
Genome annotation databases
Subcellular Location
PTM/Processing
Features
Showing features for chain.
Type | ID | Position(s) | Description | |||
---|---|---|---|---|---|---|
Chain | PRO_0000350860 | 1-413 | Scarecrow-like protein 21 | |||
Sequence: MDNVRGSIMLQPLPEIAESIDDAICHELSMWPDDAKDLLLIVEAISRGDLKLVLVACAKAVSENNLLMARWCMGELRGMVSISGEPIQRLGAYMLEGLVARLAASGSSIYKSLQSREPESYEFLSYVYVLHEVCPYFKFGYMSANGAIAEAMKDEERIHIIDFQIGQGSQWIALIQAFAARPGGAPNIRITGVGDGSVLVTVKKRLEKLAKKFDVPFRFNAVSRPSCEVEVENLDVRDGEALGVNFAYMLHHLPDESVSMENHRDRLLRMVKSLSPKVVTLVEQECNTNTSPFLPRFLETLSYYTAMFESIDVMLPRNHKERINIEQHCMARDVVNIIACEGAERIERHELLGKWKSRFSMAGFEPYPLSSIISATIRALLRDYSNGYAIEERDGALYLGWMDRILVSSCAWK |
Proteomic databases
Expression
Tissue specificity
Expressed in seedlings, roots, cotyledons, leaves and flowers.
Gene expression databases
Interaction
Subunit
Interacts with Meloidogyne incognita 16D10.
Binary interactions
Type | Entry 1 | Entry 2 | Number of experiments | Intact | |
---|---|---|---|---|---|
BINARY | Q9S7H5 | ERF115 Q9LY29 | 3 | EBI-1238472, EBI-2130977 | |
BINARY | Q9S7H5 | ERF122 Q38Q40 | 3 | EBI-1238472, EBI-25514205 | |
BINARY | Q9S7H5 | GATA24 Q8GXL7 | 6 | EBI-1238472, EBI-4426127 | |
BINARY | Q9S7H5 | GATA28 Q8H1G0 | 3 | EBI-1238472, EBI-4435064 | |
BINARY | Q9S7H5 | TCP15 Q9C9L2 | 3 | EBI-1238472, EBI-4426144 | |
BINARY | Q9S7H5 | TCP4 Q8LPR5 | 3 | EBI-1238472, EBI-15192325 | |
BINARY | Q9S7H5 | TGA2 P43273 | 3 | EBI-1238472, EBI-541307 | |
BINARY | Q9S7H5 | TIFY4B Q8GY55 | 4 | EBI-1238472, EBI-15206004 | |
BINARY | Q9S7H5 | TIFY8 Q84MB2 | 4 | EBI-1238472, EBI-4426557 |
Protein-protein interaction databases
Structure
Family & Domains
Features
Showing features for domain, region, motif.
Type | ID | Position(s) | Description | |||
---|---|---|---|---|---|---|
Domain | 41-413 | GRAS | ||||
Sequence: IVEAISRGDLKLVLVACAKAVSENNLLMARWCMGELRGMVSISGEPIQRLGAYMLEGLVARLAASGSSIYKSLQSREPESYEFLSYVYVLHEVCPYFKFGYMSANGAIAEAMKDEERIHIIDFQIGQGSQWIALIQAFAARPGGAPNIRITGVGDGSVLVTVKKRLEKLAKKFDVPFRFNAVSRPSCEVEVENLDVRDGEALGVNFAYMLHHLPDESVSMENHRDRLLRMVKSLSPKVVTLVEQECNTNTSPFLPRFLETLSYYTAMFESIDVMLPRNHKERINIEQHCMARDVVNIIACEGAERIERHELLGKWKSRFSMAGFEPYPLSSIISATIRALLRDYSNGYAIEERDGALYLGWMDRILVSSCAWK | ||||||
Region | 48-108 | Leucine repeat I (LRI) | ||||
Sequence: GDLKLVLVACAKAVSENNLLMARWCMGELRGMVSISGEPIQRLGAYMLEGLVARLAASGSS | ||||||
Region | 127-192 | VHIID | ||||
Sequence: VYVLHEVCPYFKFGYMSANGAIAEAMKDEERIHIIDFQIGQGSQWIALIQAFAARPGGAPNIRITG | ||||||
Motif | 158-162 | VHIID | ||||
Sequence: IHIID | ||||||
Region | 201-233 | Leucine repeat II (LRII) | ||||
Sequence: TVKKRLEKLAKKFDVPFRFNAVSRPSCEVEVEN | ||||||
Region | 242-336 | PFYRE | ||||
Sequence: LGVNFAYMLHHLPDESVSMENHRDRLLRMVKSLSPKVVTLVEQECNTNTSPFLPRFLETLSYYTAMFESIDVMLPRNHKERINIEQHCMARDVVN | ||||||
Region | 339-413 | SAW | ||||
Sequence: ACEGAERIERHELLGKWKSRFSMAGFEPYPLSSIISATIRALLRDYSNGYAIEERDGALYLGWMDRILVSSCAWK |
Sequence similarities
Belongs to the GRAS family.
Phylogenomic databases
Family and domain databases
Sequence
- Sequence statusComplete
- Length413
- Mass (Da)46,468
- Last updated2000-05-01 v1
- Checksum8E78B3976B0B1A5D
Features
Showing features for sequence conflict.
Type | ID | Position(s) | Description | |||
---|---|---|---|---|---|---|
Sequence conflict | 27 | in Ref. 4; BAD94984/BAD43753 | ||||
Sequence: E → G | ||||||
Sequence conflict | 338 | in Ref. 4; BAD94984/BAD43753 | ||||
Sequence: I → M |
Keywords
- Technical term
Sequence databases
Nucleotide Sequence | Protein Sequence | Molecule Type | Status | |
---|---|---|---|---|
AF210732 EMBL· GenBank· DDBJ | AAF21044.1 EMBL· GenBank· DDBJ | mRNA | ||
AC006955 EMBL· GenBank· DDBJ | AAM15339.1 EMBL· GenBank· DDBJ | Genomic DNA | ||
AC007211 EMBL· GenBank· DDBJ | AAD25580.1 EMBL· GenBank· DDBJ | Genomic DNA | ||
CP002685 EMBL· GenBank· DDBJ | AEC05882.1 EMBL· GenBank· DDBJ | Genomic DNA | ||
AK175210 EMBL· GenBank· DDBJ | BAD42973.1 EMBL· GenBank· DDBJ | mRNA | ||
AK175990 EMBL· GenBank· DDBJ | BAD43753.1 EMBL· GenBank· DDBJ | mRNA | ||
AK176099 EMBL· GenBank· DDBJ | BAD43862.1 EMBL· GenBank· DDBJ | mRNA | ||
AK221099 EMBL· GenBank· DDBJ | BAD94984.1 EMBL· GenBank· DDBJ | mRNA | ||
BT026455 EMBL· GenBank· DDBJ | ABH04562.1 EMBL· GenBank· DDBJ | mRNA |