Q9M9E2 · PPR45_ARATH
- ProteinPentatricopeptide repeat-containing protein At1g15510, chloroplastic
- GenePCMP-H73
- StatusUniProtKB reviewed (Swiss-Prot)
- Amino acids866 (go to sequence)
- Protein existenceEvidence at protein level
- Annotation score4/5
Function
function
Regulates the RNA editing of the chloroplast transcript accD, and is essential for the early stages of chloroplast biogenesis (PubMed:19500301, PubMed:20143129, PubMed:21294841).
Required for the RNA editing of the chloroplast transcript ndhF (PubMed:20143129, PubMed:21294841).
Required for the RNA editing of the chloroplast transcript ndhF (PubMed:20143129, PubMed:21294841).
GO annotations
all annotations | all molecular function | nucleotide binding | molecular_function | nucleic acid binding | dna binding | chromatin binding | dna-binding transcription factor activity | rna binding | cytoskeletal motor activity | catalytic activity | nuclease activity | signaling receptor binding | structural molecule activity | transporter activity | binding | protein binding | translation factor activity, rna binding | lipid binding | kinase activity | transferase activity | hydrolase activity | oxygen binding | enzyme regulator activity | carbohydrate binding | signaling receptor activity | translation regulator activity | transcription regulator activity | other molecular function | all biological process | carbohydrate metabolic process | generation of precursor metabolites and energy | nucleobase-containing compound metabolic process | dna metabolic process | translation | lipid metabolic process | transport | response to stress | cell cycle | cell communication | signal transduction | cell-cell signaling | multicellular organism development | circadian rhythm | biological_process | metabolic process | catabolic process | biosynthetic process | response to light stimulus | response to external stimulus | tropism | response to biotic stimulus | response to abiotic stimulus | response to endogenous stimulus | embryo development | post-embryonic development | fruit ripening | abscission | pollination | flower development | cellular process | programmed cell death | photosynthesis | cellular component organization | cell growth | protein metabolic process | cellular homeostasis | secondary metabolic process | reproductive process | cell differentiation | protein modification process | growth | epigenetic regulation of gene expression | response to chemical | anatomical structure development | regulation of molecular function | other biological process | all cellular component | cellular_component | extracellular region | cell wall | intracellular anatomical structure | nucleus | nuclear envelope | nucleoplasm | nucleolus | cytoplasm | mitochondrion | lysosome | endosome | vacuole | peroxisome | endoplasmic reticulum | golgi apparatus | cytosol | ribosome | cytoskeleton | plasma membrane | chloroplast | plastid | thylakoid | membrane | external encapsulating structure | other cellular component | |||
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Aspect | Term | |
---|---|---|
Cellular Component | chloroplast | |
Molecular Function | zinc ion binding | |
Biological Process | chloroplast organization | |
Biological Process | response to light stimulus | |
Biological Process | RNA modification |
Names & Taxonomy
Protein names
- Recommended namePentatricopeptide repeat-containing protein At1g15510, chloroplastic
- Alternative names
Gene names
Organism names
- Strain
- Taxonomic lineageEukaryota > Viridiplantae > Streptophyta > Embryophyta > Tracheophyta > Spermatophyta > Magnoliopsida > eudicotyledons > Gunneridae > Pentapetalae > rosids > malvids > Brassicales > Brassicaceae > Camelineae > Arabidopsis
Accessions
- Primary accessionQ9M9E2
- Secondary accessions
Proteomes
Organism-specific databases
Genome annotation databases
Subcellular Location
Phenotypes & Variants
Disruption phenotype
Albino cotyledons without primary leaf and seedling lethality under autotrophic growth conditions.
Features
Showing features for mutagenesis.
Type | ID | Position(s) | Description | |||
---|---|---|---|---|---|---|
Mutagenesis | 500 | In ecb2-2; delayed chloroplast development and plant greening. | ||||
Sequence: T → I |
Variants
We now provide the "Disease & Variants" viewer in its own tab.
The viewer provides 62 variants from UniProt as well as other sources including ClinVar and dbSNP.
PTM/Processing
Features
Showing features for transit peptide, chain.
Type | ID | Position(s) | Description | |||
---|---|---|---|---|---|---|
Transit peptide | 1-52 | Chloroplast | ||||
Sequence: MASSAQSPHFYLNPGKSNSFQSKAYKQRNVNFYWNFGIRRLFLRKSQGLSVL | ||||||
Chain | PRO_0000342786 | 53-866 | Pentatricopeptide repeat-containing protein At1g15510, chloroplastic | |||
Sequence: SSSSSSTHFSNSQLHGLCANGKLEEAMKLLNSMQELRVAVDEDVFVALVRLCEWKRAQEEGSKVYSIALSSMSSLGVELGNAFLAMFVRFGNLVDAWYVFGKMSERNLFSWNVLVGGYAKQGYFDEAMCLYHRMLWVGGVKPDVYTFPCVLRTCGGIPDLARGKEVHVHVVRYGYELDIDVVNALITMYVKCGDVKSARLLFDRMPRRDIISWNAMISGYFENGMCHEGLELFFAMRGLSVDPDLMTLTSVISACELLGDRRLGRDIHAYVITTGFAVDISVCNSLTQMYLNAGSWREAEKLFSRMERKDIVSWTTMISGYEYNFLPDKAIDTYRMMDQDSVKPDEITVAAVLSACATLGDLDTGVELHKLAIKARLISYVIVANNLINMYSKCKCIDKALDIFHNIPRKNVISWTSIIAGLRLNNRCFEALIFLRQMKMTLQPNAITLTAALAACARIGALMCGKEIHAHVLRTGVGLDDFLPNALLDMYVRCGRMNTAWSQFNSQKKDVTSWNILLTGYSERGQGSMVVELFDRMVKSRVRPDEITFISLLCGCSKSQMVRQGLMYFSKMEDYGVTPNLKHYACVVDLLGRAGELQEAHKFIQKMPVTPDPAVWGALLNACRIHHKIDLGELSAQHIFELDKKSVGYYILLCNLYADCGKWREVAKVRRMMKENGLTVDAGCSWVEVKGKVHAFLSDDKYHPQTKEINTVLEGFYEKMSEVGLTKISESSSMDETEISRDEIFCGHSERKAIAFGLINTVPGMPIWVTKNLSMCENCHDTVKFISKTVRREISVRDAEHFHHFKDGECSCGD |
Proteomic databases
Expression
Gene expression databases
Interaction
Protein-protein interaction databases
Structure
Family & Domains
Features
Showing features for repeat, region.
Type | ID | Position(s) | Description | |||
---|---|---|---|---|---|---|
Repeat | 58-92 | PPR 1 | ||||
Sequence: STHFSNSQLHGLCANGKLEEAMKLLNSMQELRVAV | ||||||
Repeat | 93-123 | PPR 2 | ||||
Sequence: DEDVFVALVRLCEWKRAQEEGSKVYSIALSS | ||||||
Repeat | 128-158 | PPR 3 | ||||
Sequence: GVELGNAFLAMFVRFGNLVDAWYVFGKMSER | ||||||
Repeat | 159-194 | PPR 4 | ||||
Sequence: NLFSWNVLVGGYAKQGYFDEAMCLYHRMLWVGGVKP | ||||||
Repeat | 195-229 | PPR 5 | ||||
Sequence: DVYTFPCVLRTCGGIPDLARGKEVHVHVVRYGYEL | ||||||
Repeat | 230-260 | PPR 6 | ||||
Sequence: DIDVVNALITMYVKCGDVKSARLLFDRMPRR | ||||||
Repeat | 261-295 | PPR 7 | ||||
Sequence: DIISWNAMISGYFENGMCHEGLELFFAMRGLSVDP | ||||||
Repeat | 296-330 | PPR 8 | ||||
Sequence: DLMTLTSVISACELLGDRRLGRDIHAYVITTGFAV | ||||||
Repeat | 331-365 | PPR 9 | ||||
Sequence: DISVCNSLTQMYLNAGSWREAEKLFSRMERKDIVS | ||||||
Repeat | 366-396 | PPR 10 | ||||
Sequence: WTTMISGYEYNFLPDKAIDTYRMMDQDSVKP | ||||||
Repeat | 397-431 | PPR 11 | ||||
Sequence: DEITVAAVLSACATLGDLDTGVELHKLAIKARLIS | ||||||
Repeat | 432-466 | PPR 12 | ||||
Sequence: YVIVANNLINMYSKCKCIDKALDIFHNIPRKNVIS | ||||||
Repeat | 467-493 | PPR 13 | ||||
Sequence: WTSIIAGLRLNNRCFEALIFLRQMKMT | ||||||
Repeat | 497-531 | PPR 14 | ||||
Sequence: NAITLTAALAACARIGALMCGKEIHAHVLRTGVGL | ||||||
Repeat | 532-561 | PPR 15 | ||||
Sequence: DDFLPNALLDMYVRCGRMNTAWSQFNSQKK | ||||||
Repeat | 562-596 | PPR 16 | ||||
Sequence: DVTSWNILLTGYSERGQGSMVVELFDRMVKSRVRP | ||||||
Repeat | 597-631 | PPR 17 | ||||
Sequence: DEITFISLLCGCSKSQMVRQGLMYFSKMEDYGVTP | ||||||
Repeat | 632-662 | PPR 18 | ||||
Sequence: NLKHYACVVDLLGRAGELQEAHKFIQKMPVT | ||||||
Region | 667-742 | Type E motif | ||||
Sequence: VWGALLNACRIHHKIDLGELSAQHIFELDKKSVGYYILLCNLYADCGKWREVAKVRRMMKENGLTVDAGCSWVEVK | ||||||
Region | 743-773 | Type E+ motif | ||||
Sequence: GKVHAFLSDDKYHPQTKEINTVLEGFYEKMS | ||||||
Region | 774-866 | Type DYW motif | ||||
Sequence: EVGLTKISESSSMDETEISRDEIFCGHSERKAIAFGLINTVPGMPIWVTKNLSMCENCHDTVKFISKTVRREISVRDAEHFHHFKDGECSCGD |
Sequence similarities
Belongs to the PPR family. PCMP-H subfamily.
Keywords
- Domain
Phylogenomic databases
Family and domain databases
Sequence
- Sequence statusComplete
- Sequence processingThe displayed sequence is further processed into a mature form.
- Length866
- Mass (Da)97,697
- Last updated2000-10-01 v1
- Checksum41238CF8CB57F5D6
Keywords
- Technical term
Sequence databases
Nucleotide Sequence | Protein Sequence | Molecule Type | Status | |
---|---|---|---|---|
HM157284 EMBL· GenBank· DDBJ | ADK35876.1 EMBL· GenBank· DDBJ | mRNA | ||
AC013453 EMBL· GenBank· DDBJ | AAF71977.1 EMBL· GenBank· DDBJ | Genomic DNA | ||
CP002684 EMBL· GenBank· DDBJ | AEE29331.1 EMBL· GenBank· DDBJ | Genomic DNA |