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Q9M3B8 · PHIP1_ARATH

Function

function

RNA-binding protein which mediates polarized mRNA (e.g. Ran2 transcripts mRNA) transport from the nucleus to the vicinity of the cell plate during cytokinesis and phragmoplast formation.

GO annotations

all annotationsall molecular functionnucleotide bindingmolecular_functionnucleic acid bindingdna bindingchromatin bindingdna-binding transcription factor activityrna bindingcytoskeletal motor activitycatalytic activitynuclease activitysignaling receptor bindingstructural molecule activitytransporter activitybindingprotein bindingtranslation factor activity, rna bindinglipid bindingkinase activitytransferase activityhydrolase activityoxygen bindingenzyme regulator activitycarbohydrate bindingsignaling receptor activitytranslation regulator activitytranscription regulator activityother molecular functionall biological processcarbohydrate metabolic processgeneration of precursor metabolites and energynucleobase-containing compound metabolic processdna metabolic processtranslationlipid metabolic processtransportresponse to stresscell cyclecell communicationsignal transductioncell-cell signalingmulticellular organism developmentcircadian rhythmbiological_processmetabolic processcatabolic processbiosynthetic processresponse to light stimulusresponse to external stimulustropismresponse to biotic stimulusresponse to abiotic stimulusresponse to endogenous stimulusembryo developmentpost-embryonic developmentfruit ripeningabscissionpollinationflower developmentcellular processprogrammed cell deathphotosynthesiscellular component organizationcell growthprotein metabolic processcellular homeostasissecondary metabolic processreproductive processcell differentiationprotein modification processgrowthepigenetic regulation of gene expressionresponse to chemicalanatomical structure developmentregulation of molecular functionother biological processall cellular componentcellular_componentextracellular regioncell wallintracellular anatomical structurenucleusnuclear envelopenucleoplasmnucleoluscytoplasmmitochondrionlysosomeendosomevacuoleperoxisomeendoplasmic reticulumgolgi apparatuscytosolribosomecytoskeletonplasma membranechloroplastplastidthylakoidmembraneexternal encapsulating structureother cellular component
Cell color indicative of number of GO terms
AspectTerm
Cellular Componentcytoskeleton
Cellular Componentextrinsic component of membrane
Cellular Componentnucleus
Cellular Componentphragmoplast
Cellular Componentplasma membrane
Molecular FunctionmRNA binding
Molecular Functionzinc ion binding
Biological Processcell plate formation involved in plant-type cell wall biogenesis
Biological Processphragmoplast assembly

Keywords

Names & Taxonomy

Protein names

  • Recommended name
    Phragmoplastin interacting protein 1

Gene names

    • Name
      PHIP1
    • ORF names
      T26I12.220
    • Ordered locus names
      At3g55340

Organism names

  • Taxonomic identifier
  • Strain
    • cv. Columbia
  • Taxonomic lineage
    Eukaryota > Viridiplantae > Streptophyta > Embryophyta > Tracheophyta > Spermatophyta > Magnoliopsida > eudicotyledons > Gunneridae > Pentapetalae > rosids > malvids > Brassicales > Brassicaceae > Camelineae > Arabidopsis

Accessions

  • Primary accession
    Q9M3B8
  • Secondary accessions
    • A0A178VII4
    • Q681R8
    • Q8W2K5

Proteomes

Organism-specific databases

Genome annotation databases

Subcellular Location

Nucleus
Cell membrane
; Peripheral membrane protein
Note: Associates with the forming cell plate during cytokinesis; may shuttle between the nucleus and the forming cell plate.

Keywords

PTM/Processing

Features

Showing features for chain.

TypeIDPosition(s)Description
ChainPRO_00004525741-597Phragmoplastin interacting protein 1

Proteomic databases

Expression

Gene expression databases

Interaction

Subunit

Interacts with phragmoplastins (e.g. DRP1A, DRP1B, DRP1C, DRP1D and DRP1E) and with GTP-bound ARAC11/ROP1 as well as with Ran2 transcripts.

Protein-protein interaction databases

Structure

Family & Domains

Features

Showing features for compositional bias, region, motif, domain, zinc finger.

Type
IDPosition(s)Description
Compositional bias18-39Polar residues
Region18-136Disordered
Compositional bias42-95Basic and acidic residues
Motif112-119Nuclear localization signal
Compositional bias112-127Basic residues
Domain161-238RRM 1
Domain262-338RRM 2
Zinc finger397-411CCHC-type 1
Zinc finger481-495CCHC-type 2
Zinc finger576-591CCHC-type 3

Keywords

Phylogenomic databases

Family and domain databases

Sequence

  • Sequence status
    Complete
  • Length
    597
  • Mass (Da)
    65,997
  • Last updated
    2000-10-01 v1
  • MD5 Checksum
    BDF5C2F9D57CA60A86E0DE5D6ADAD20D
MVLSNKKLKQRIRQDLAESLSVSVSETNPQSQSLKLLLDSSSHKPRLSKREKRRNCETFAREDDEIRENEVGNGGSSEKTDTKIKKKRKRDDAVEVDELEGDEGTKEEQKPQKKKNKKKKKKRKVNKTPKKAEEGNVEEKVKVEEIEVNTDNKEEDGVVPNKLYVGGIPYQSTEDEIRSYFRSCGVIIKVDCKMRPEDGAFSGIAFITFDTEDGAKRALAFDRAAMGDRYLTIQQYVKTTTPSIPRRKTSSGFAPEMVDGYNRVYIGNLAWDTTERDIRKLFSDCVINSVRLGKNKETGEFKGYAHVDFKDSVSVAIALKLDQQVICGRPVKICCALKDRPATDHTPGETNNAGSYNMEDTYAAADPVPALAGRSEVDDGNYFATTVSSSKVKRRVCYECGEKGHLSTACPIKLQKADDQANSKLGQETVDGRPAMQSYGLPKNSGDSYYMNETYASTNETYNGGYSASAVGTGKVKRRNCYECGEKGHLSTACPIKLQNTSHTNSTLDHQTVEAGPTQVTSYSLQKKTRDTENNGGSFMDESYATVPISIDVTNGANDASLTSAVSTGKIKKRNCYECGEKGHLSSACPNKLQKQG

Sequence caution

The sequence AAL55607.1 differs from that shown. Reason: Frameshift

Features

Showing features for compositional bias, sequence conflict.

Type
IDPosition(s)Description
Compositional bias18-39Polar residues
Compositional bias42-95Basic and acidic residues
Compositional bias112-127Basic residues
Sequence conflict138in Ref. 1; AAL55607
Sequence conflict421in Ref. 4; BAD43312
Sequence conflict518in Ref. 1; AAL55607

Keywords

Sequence databases

Nucleotide SequenceProtein SequenceMolecule TypeStatus
AF196776
EMBL· GenBank· DDBJ
AAL55607.1
EMBL· GenBank· DDBJ
mRNA Frameshift
AL132954
EMBL· GenBank· DDBJ
CAB75768.1
EMBL· GenBank· DDBJ
Genomic DNA
CP002686
EMBL· GenBank· DDBJ
AEE79370.1
EMBL· GenBank· DDBJ
Genomic DNA
AK175549
EMBL· GenBank· DDBJ
BAD43312.1
EMBL· GenBank· DDBJ
mRNA

Genome annotation databases

Similar Proteins

Disclaimer

Any medical or genetic information present in this entry is provided for research, educational and informational purposes only. It is not in any way intended to be used as a substitute for professional medical advice, diagnosis, treatment or care. Our staff consists of biologists and biochemists that are not trained to give medical advice.
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