Q9M0R4 · ATL37_ARATH
- ProteinPutative RING-H2 finger protein ATL37
- GeneATL37
- StatusUniProtKB reviewed (Swiss-Prot)
- Amino acids357 (go to sequence)
- Protein existenceInferred from homology
- Annotation score3/5
Variants
Variant ID(s) | Position(s) | Change | Description | Clinical significance | Provenance | ||
---|---|---|---|---|---|---|---|
ENSVATH11354099 | 3 | I>L | 1000Genomes | ||||
Consequence: missense Predictions: - SIFT: deleterious - low confidence (0.03) Somatic: No Accession: 4:g.5815855A>C Codon: ATC/CTC Consequence type: missense Cytogenetic band: Genomic location: 4:g.5815855A>C Locations: - p.Ile3Leu (EnsemblPlants:AT4G09130.1) - c.7A>C (EnsemblPlants:AT4G09130.1) Source type: large scale study Cross-references: | |||||||
ENSVATH06584696 | 7 | D>Y | 1000Genomes | ||||
Consequence: missense Predictions: - SIFT: tolerated - low confidence (0.14) Somatic: No Accession: 4:g.5815867G>T Codon: GAT/TAT Consequence type: missense Cytogenetic band: Genomic location: 4:g.5815867G>T Locations: - p.Asp7Tyr (EnsemblPlants:AT4G09130.1) - c.19G>T (EnsemblPlants:AT4G09130.1) Source type: large scale study Cross-references: | |||||||
ENSVATH06584697 | 9 | S>G | 1000Genomes | ||||
Consequence: missense Predictions: - SIFT: tolerated - low confidence (0.09) Somatic: No Accession: 4:g.5815873A>G Codon: AGC/GGC Consequence type: missense Cytogenetic band: Genomic location: 4:g.5815873A>G Locations: - p.Ser9Gly (EnsemblPlants:AT4G09130.1) - c.25A>G (EnsemblPlants:AT4G09130.1) Source type: large scale study Cross-references: | |||||||
ENSVATH11354100 | 18 | L>V | 1000Genomes | ||||
Consequence: missense Predictions: - SIFT: tolerated (0.1) Somatic: No Accession: 4:g.5815900T>G Codon: TTG/GTG Consequence type: missense Cytogenetic band: Genomic location: 4:g.5815900T>G Locations: - p.Leu18Val (EnsemblPlants:AT4G09130.1) - c.52T>G (EnsemblPlants:AT4G09130.1) Source type: large scale study Cross-references: | |||||||
tmp_4_5815906_C_T | 20 | L>F | 1000Genomes | ||||
Consequence: missense Predictions: - SIFT: deleterious (0.02) Somatic: No Accession: 4:g.5815906C>T Codon: CTC/TTC Consequence type: missense Cytogenetic band: Genomic location: 4:g.5815906C>T Locations: - p.Leu20Phe (EnsemblPlants:AT4G09130.1) - c.58C>T (EnsemblPlants:AT4G09130.1) Source type: large scale study Cross-references: | |||||||
ENSVATH00481799 | 28 | Y>H | 1000Genomes | ||||
Consequence: missense Predictions: - SIFT: tolerated (0.56) Somatic: No Accession: 4:g.5815930T>C Codon: TAC/CAC Consequence type: missense Cytogenetic band: Genomic location: 4:g.5815930T>C Locations: - p.Tyr28His (EnsemblPlants:AT4G09130.1) - c.82T>C (EnsemblPlants:AT4G09130.1) Source type: large scale study Cross-references: | |||||||
tmp_4_5815939_T_A | 31 | C>S | 1000Genomes | ||||
Consequence: missense Predictions: - SIFT: tolerated (0.5) Somatic: No Accession: 4:g.5815939T>A Codon: TGC/AGC Consequence type: missense Cytogenetic band: Genomic location: 4:g.5815939T>A Locations: - p.Cys31Ser (EnsemblPlants:AT4G09130.1) - c.91T>A (EnsemblPlants:AT4G09130.1) Source type: large scale study Cross-references: | |||||||
tmp_4_5815946_A_C | 33 | Q>P | 1000Genomes | ||||
Consequence: missense Predictions: - SIFT: tolerated (0.48) Somatic: No Accession: 4:g.5815946A>C Codon: CAA/CCA Consequence type: missense Cytogenetic band: Genomic location: 4:g.5815946A>C Locations: - p.Gln33Pro (EnsemblPlants:AT4G09130.1) - c.98A>C (EnsemblPlants:AT4G09130.1) Source type: large scale study Cross-references: | |||||||
ENSVATH14102817 | 38 | A>P | 1000Genomes | ||||
Consequence: missense Predictions: - SIFT: tolerated (0.35) Somatic: No Accession: 4:g.5815960G>C Codon: GCA/CCA Consequence type: missense Cytogenetic band: Genomic location: 4:g.5815960G>C Locations: - p.Ala38Pro (EnsemblPlants:AT4G09130.1) - c.112G>C (EnsemblPlants:AT4G09130.1) Source type: large scale study Cross-references: | |||||||
ENSVATH11354101 | 43 | K>N | 1000Genomes | ||||
Consequence: missense Predictions: - SIFT: tolerated (0.3) Somatic: No Accession: 4:g.5815977A>C Codon: AAA/AAC Consequence type: missense Cytogenetic band: Genomic location: 4:g.5815977A>C Locations: - p.Lys43Asn (EnsemblPlants:AT4G09130.1) - c.129A>C (EnsemblPlants:AT4G09130.1) Source type: large scale study Cross-references: | |||||||
ENSVATH06584698 | 46 | E>A | 1000Genomes | ||||
Consequence: missense Predictions: - SIFT: tolerated (0.81) Somatic: No Accession: 4:g.5815985A>C Codon: GAG/GCG Consequence type: missense Cytogenetic band: Genomic location: 4:g.5815985A>C Locations: - p.Glu46Ala (EnsemblPlants:AT4G09130.1) - c.137A>C (EnsemblPlants:AT4G09130.1) Source type: large scale study Cross-references: | |||||||
ENSVATH06584699 | 46 | E>D | 1000Genomes | ||||
Consequence: missense Predictions: - SIFT: tolerated (0.63) Somatic: No Accession: 4:g.5815986G>C Codon: GAG/GAC Consequence type: missense Cytogenetic band: Genomic location: 4:g.5815986G>C Locations: - p.Glu46Asp (EnsemblPlants:AT4G09130.1) - c.138G>C (EnsemblPlants:AT4G09130.1) Source type: large scale study Cross-references: | |||||||
tmp_4_5815996_A_G | 50 | I>V | 1000Genomes | ||||
Consequence: missense Predictions: - SIFT: tolerated (0.56) Somatic: No Accession: 4:g.5815996A>G Codon: ATT/GTT Consequence type: missense Cytogenetic band: Genomic location: 4:g.5815996A>G Locations: - p.Ile50Val (EnsemblPlants:AT4G09130.1) - c.148A>G (EnsemblPlants:AT4G09130.1) Source type: large scale study Cross-references: | |||||||
ENSVATH02757398 | 78 | T>A | 1000Genomes | ||||
Consequence: missense Predictions: - SIFT: tolerated (1) Somatic: No Accession: 4:g.5816080A>G Codon: ACA/GCA Consequence type: missense Cytogenetic band: Genomic location: 4:g.5816080A>G Locations: - p.Thr78Ala (EnsemblPlants:AT4G09130.1) - c.232A>G (EnsemblPlants:AT4G09130.1) Source type: large scale study Cross-references: | |||||||
ENSVATH02757398 | 78 | T>P | 1000Genomes | ||||
Consequence: missense Predictions: - SIFT: tolerated (0.3) Somatic: No Accession: 4:g.5816080A>C Codon: ACA/CCA Consequence type: missense Cytogenetic band: Genomic location: 4:g.5816080A>C Locations: - p.Thr78Pro (EnsemblPlants:AT4G09130.1) - c.232A>C (EnsemblPlants:AT4G09130.1) Source type: large scale study Cross-references: | |||||||
ENSVATH11354102 | 78 | T>R | 1000Genomes | ||||
Consequence: missense Predictions: - SIFT: tolerated (0.51) Somatic: No Accession: 4:g.5816081C>G Codon: ACA/AGA Consequence type: missense Cytogenetic band: Genomic location: 4:g.5816081C>G Locations: - p.Thr78Arg (EnsemblPlants:AT4G09130.1) - c.233C>G (EnsemblPlants:AT4G09130.1) Source type: large scale study Cross-references: | |||||||
tmp_4_5816093_A_G | 82 | E>G | 1000Genomes | ||||
Consequence: missense Predictions: - SIFT: tolerated (0.25) Somatic: No Accession: 4:g.5816093A>G Codon: GAA/GGA Consequence type: missense Cytogenetic band: Genomic location: 4:g.5816093A>G Locations: - p.Glu82Gly (EnsemblPlants:AT4G09130.1) - c.245A>G (EnsemblPlants:AT4G09130.1) Source type: large scale study Cross-references: | |||||||
ENSVATH00481801 | 83 | V>M | 1000Genomes | ||||
Consequence: missense Predictions: - SIFT: tolerated (0.07) Somatic: No Accession: 4:g.5816095G>A Codon: GTG/ATG Consequence type: missense Cytogenetic band: Genomic location: 4:g.5816095G>A Locations: - p.Val83Met (EnsemblPlants:AT4G09130.1) - c.247G>A (EnsemblPlants:AT4G09130.1) Source type: large scale study Cross-references: | |||||||
ENSVATH06584701 | 98 | E>K | 1000Genomes | ||||
Consequence: missense Predictions: - SIFT: tolerated (0.21) Somatic: No Accession: 4:g.5816140G>A Codon: GAG/AAG Consequence type: missense Cytogenetic band: Genomic location: 4:g.5816140G>A Locations: - p.Glu98Lys (EnsemblPlants:AT4G09130.1) - c.292G>A (EnsemblPlants:AT4G09130.1) Source type: large scale study Cross-references: | |||||||
ENSVATH02757400 | 117 | G>R | 1000Genomes | ||||
Consequence: missense Predictions: - SIFT: deleterious (0) Somatic: No Accession: 4:g.5816197G>A Codon: GGA/AGA Consequence type: missense Cytogenetic band: Genomic location: 4:g.5816197G>A Locations: - p.Gly117Arg (EnsemblPlants:AT4G09130.1) - c.349G>A (EnsemblPlants:AT4G09130.1) Source type: large scale study Cross-references: | |||||||
ENSVATH06584703 | 125 | C>R | 1000Genomes | ||||
Consequence: missense Predictions: - SIFT: tolerated (0.27) Somatic: No Accession: 4:g.5816221T>C Codon: TGC/CGC Consequence type: missense Cytogenetic band: Genomic location: 4:g.5816221T>C Locations: - p.Cys125Arg (EnsemblPlants:AT4G09130.1) - c.373T>C (EnsemblPlants:AT4G09130.1) Source type: large scale study Cross-references: | |||||||
ENSVATH00481803 | 132 | P>S | 1000Genomes | ||||
Consequence: missense Predictions: - SIFT: tolerated (0.09) Somatic: No Accession: 4:g.5816242C>T Codon: CCG/TCG Consequence type: missense Cytogenetic band: Genomic location: 4:g.5816242C>T Locations: - p.Pro132Ser (EnsemblPlants:AT4G09130.1) - c.394C>T (EnsemblPlants:AT4G09130.1) Source type: large scale study Cross-references: | |||||||
ENSVATH00481804 | 149 | D>E | 1000Genomes | ||||
Consequence: missense Predictions: - SIFT: deleterious (0.01) Somatic: No Accession: 4:g.5816295C>A Codon: GAC/GAA Consequence type: missense Cytogenetic band: Genomic location: 4:g.5816295C>A Locations: - p.Asp149Glu (EnsemblPlants:AT4G09130.1) - c.447C>A (EnsemblPlants:AT4G09130.1) Source type: large scale study Cross-references: | |||||||
ENSVATH11354103 | 159 | P>L | 1000Genomes | ||||
Consequence: missense Predictions: - SIFT: deleterious (0) Somatic: No Accession: 4:g.5816324C>T Codon: CCC/CTC Consequence type: missense Cytogenetic band: Genomic location: 4:g.5816324C>T Locations: - p.Pro159Leu (EnsemblPlants:AT4G09130.1) - c.476C>T (EnsemblPlants:AT4G09130.1) Source type: large scale study Cross-references: | |||||||
tmp_4_5816348_T_A | 167 | L>Q | 1000Genomes | ||||
Consequence: missense Predictions: - SIFT: deleterious (0.05) Somatic: No Accession: 4:g.5816348T>A Codon: CTG/CAG Consequence type: missense Cytogenetic band: Genomic location: 4:g.5816348T>A Locations: - p.Leu167Gln (EnsemblPlants:AT4G09130.1) - c.500T>A (EnsemblPlants:AT4G09130.1) Source type: large scale study Cross-references: | |||||||
ENSVATH08315242 | 171 | D>A | 1000Genomes | ||||
Consequence: missense Predictions: - SIFT: deleterious (0.03) Somatic: No Accession: 4:g.5816360A>C Codon: GAC/GCC Consequence type: missense Cytogenetic band: Genomic location: 4:g.5816360A>C Locations: - p.Asp171Ala (EnsemblPlants:AT4G09130.1) - c.512A>C (EnsemblPlants:AT4G09130.1) Source type: large scale study Cross-references: | |||||||
ENSVATH08315242 | 171 | D>V | 1000Genomes | ||||
Consequence: missense Predictions: - SIFT: deleterious (0.01) Somatic: No Accession: 4:g.5816360A>T Codon: GAC/GTC Consequence type: missense Cytogenetic band: Genomic location: 4:g.5816360A>T Locations: - p.Asp171Val (EnsemblPlants:AT4G09130.1) - c.512A>T (EnsemblPlants:AT4G09130.1) Source type: large scale study Cross-references: | |||||||
ENSVATH02757403 | 175 | H>N | 1000Genomes | ||||
Consequence: missense Predictions: - SIFT: tolerated (0.23) Somatic: No Accession: 4:g.5816371C>A Codon: CAT/AAT Consequence type: missense Cytogenetic band: Genomic location: 4:g.5816371C>A Locations: - p.His175Asn (EnsemblPlants:AT4G09130.1) - c.523C>A (EnsemblPlants:AT4G09130.1) Source type: large scale study Cross-references: | |||||||
tmp_4_5816402_C_G | 185 | A>G | 1000Genomes | ||||
Consequence: missense Predictions: - SIFT: tolerated (0.37) Somatic: No Accession: 4:g.5816402C>G Codon: GCA/GGA Consequence type: missense Cytogenetic band: Genomic location: 4:g.5816402C>G Locations: - p.Ala185Gly (EnsemblPlants:AT4G09130.1) - c.554C>G (EnsemblPlants:AT4G09130.1) Source type: large scale study Cross-references: | |||||||
ENSVATH02757406 | 193 | P>L | 1000Genomes | ||||
Consequence: missense Predictions: - SIFT: tolerated (0.06) Somatic: No Accession: 4:g.5816426C>T Codon: CCC/CTC Consequence type: missense Cytogenetic band: Genomic location: 4:g.5816426C>T Locations: - p.Pro193Leu (EnsemblPlants:AT4G09130.1) - c.578C>T (EnsemblPlants:AT4G09130.1) Source type: large scale study Cross-references: | |||||||
ENSVATH11354104 | 230 | L>R | 1000Genomes | ||||
Consequence: missense Predictions: - SIFT: deleterious (0) Somatic: No Accession: 4:g.5816537T>G Codon: CTA/CGA Consequence type: missense Cytogenetic band: Genomic location: 4:g.5816537T>G Locations: - p.Leu230Arg (EnsemblPlants:AT4G09130.1) - c.689T>G (EnsemblPlants:AT4G09130.1) Source type: large scale study Cross-references: | |||||||
tmp_4_5816554_C_A | 236 | H>N | 1000Genomes | ||||
Consequence: missense Predictions: - SIFT: deleterious (0.01) Somatic: No Accession: 4:g.5816554C>A Codon: CAT/AAT Consequence type: missense Cytogenetic band: Genomic location: 4:g.5816554C>A Locations: - p.His236Asn (EnsemblPlants:AT4G09130.1) - c.706C>A (EnsemblPlants:AT4G09130.1) Source type: large scale study Cross-references: | |||||||
ENSVATH06584708 | 252 | F>C | 1000Genomes | ||||
Consequence: missense Predictions: - SIFT: deleterious (0) Somatic: No Accession: 4:g.5816603T>G Codon: TTC/TGC Consequence type: missense Cytogenetic band: Genomic location: 4:g.5816603T>G Locations: - p.Phe252Cys (EnsemblPlants:AT4G09130.1) - c.755T>G (EnsemblPlants:AT4G09130.1) Source type: large scale study Cross-references: | |||||||
ENSVATH06584708 | 252 | F>Y | 1000Genomes | ||||
Consequence: missense Predictions: - SIFT: deleterious (0) Somatic: No Accession: 4:g.5816603T>A Codon: TTC/TAC Consequence type: missense Cytogenetic band: Genomic location: 4:g.5816603T>A Locations: - p.Phe252Tyr (EnsemblPlants:AT4G09130.1) - c.755T>A (EnsemblPlants:AT4G09130.1) Source type: large scale study Cross-references: | |||||||
ENSVATH00481805 | 257 | P>S | 1000Genomes | ||||
Consequence: missense Predictions: - SIFT: deleterious (0) Somatic: No Accession: 4:g.5816617C>T Codon: CCG/TCG Consequence type: missense Cytogenetic band: Genomic location: 4:g.5816617C>T Locations: - p.Pro257Ser (EnsemblPlants:AT4G09130.1) - c.769C>T (EnsemblPlants:AT4G09130.1) Source type: large scale study Cross-references: | |||||||
tmp_4_5816633_G_A | 262 | R>K | 1000Genomes | ||||
Consequence: missense Predictions: - SIFT: deleterious (0.04) Somatic: No Accession: 4:g.5816633G>A Codon: AGA/AAA Consequence type: missense Cytogenetic band: Genomic location: 4:g.5816633G>A Locations: - p.Arg262Lys (EnsemblPlants:AT4G09130.1) - c.785G>A (EnsemblPlants:AT4G09130.1) Source type: large scale study Cross-references: | |||||||
ENSVATH00481806 | 274 | H>R | 1000Genomes | ||||
Consequence: missense Predictions: - SIFT: tolerated (0.14) Somatic: No Accession: 4:g.5816669A>G Codon: CAT/CGT Consequence type: missense Cytogenetic band: Genomic location: 4:g.5816669A>G Locations: - p.His274Arg (EnsemblPlants:AT4G09130.1) - c.821A>G (EnsemblPlants:AT4G09130.1) Source type: large scale study Cross-references: | |||||||
tmp_4_5816668_C_T | 274 | H>Y | 1000Genomes | ||||
Consequence: missense Predictions: - SIFT: tolerated (0.1) Somatic: No Accession: 4:g.5816668C>T Codon: CAT/TAT Consequence type: missense Cytogenetic band: Genomic location: 4:g.5816668C>T Locations: - p.His274Tyr (EnsemblPlants:AT4G09130.1) - c.820C>T (EnsemblPlants:AT4G09130.1) Source type: large scale study Cross-references: | |||||||
tmp_4_5816740_G_A | 298 | G>S | 1000Genomes | ||||
Consequence: missense Predictions: - SIFT: tolerated (0.48) Somatic: No Accession: 4:g.5816740G>A Codon: GGT/AGT Consequence type: missense Cytogenetic band: Genomic location: 4:g.5816740G>A Locations: - p.Gly298Ser (EnsemblPlants:AT4G09130.1) - c.892G>A (EnsemblPlants:AT4G09130.1) Source type: large scale study Cross-references: | |||||||
tmp_4_5816771_G_A | 308 | R>Q | 1000Genomes | ||||
Consequence: missense Predictions: - SIFT: tolerated (0.08) Somatic: No Accession: 4:g.5816771G>A Codon: CGA/CAA Consequence type: missense Cytogenetic band: Genomic location: 4:g.5816771G>A Locations: - p.Arg308Gln (EnsemblPlants:AT4G09130.1) - c.923G>A (EnsemblPlants:AT4G09130.1) Source type: large scale study Cross-references: | |||||||
ENSVATH06584711 | 309 | A>V | 1000Genomes | ||||
Consequence: missense Predictions: - SIFT: tolerated (0.36) Somatic: No Accession: 4:g.5816774C>T Codon: GCC/GTC Consequence type: missense Cytogenetic band: Genomic location: 4:g.5816774C>T Locations: - p.Ala309Val (EnsemblPlants:AT4G09130.1) - c.926C>T (EnsemblPlants:AT4G09130.1) Source type: large scale study Cross-references: | |||||||
tmp_4_5816791_T_A,G | 315 | S>A | 1000Genomes | ||||
Consequence: missense Predictions: - SIFT: deleterious (0.01) Somatic: No Accession: 4:g.5816791T>G Codon: TCT/GCT Consequence type: missense Cytogenetic band: Genomic location: 4:g.5816791T>G Locations: - p.Ser315Ala (EnsemblPlants:AT4G09130.1) - c.943T>G (EnsemblPlants:AT4G09130.1) Source type: large scale study Cross-references: | |||||||
tmp_4_5816791_T_A,G | 315 | S>T | 1000Genomes | ||||
Consequence: missense Predictions: - SIFT: tolerated (0.11) Somatic: No Accession: 4:g.5816791T>A Codon: TCT/ACT Consequence type: missense Cytogenetic band: Genomic location: 4:g.5816791T>A Locations: - p.Ser315Thr (EnsemblPlants:AT4G09130.1) - c.943T>A (EnsemblPlants:AT4G09130.1) Source type: large scale study Cross-references: | |||||||
tmp_4_5816809_G_A | 321 | A>T | 1000Genomes | ||||
Consequence: missense Predictions: - SIFT: tolerated (0.13) Somatic: No Accession: 4:g.5816809G>A Codon: GCT/ACT Consequence type: missense Cytogenetic band: Genomic location: 4:g.5816809G>A Locations: - p.Ala321Thr (EnsemblPlants:AT4G09130.1) - c.961G>A (EnsemblPlants:AT4G09130.1) Source type: large scale study Cross-references: | |||||||
ENSVATH00481808 | 323 | V>A | 1000Genomes | ||||
Consequence: missense Predictions: - SIFT: tolerated (0.06) Somatic: No Accession: 4:g.5816816T>C Codon: GTT/GCT Consequence type: missense Cytogenetic band: Genomic location: 4:g.5816816T>C Locations: - p.Val323Ala (EnsemblPlants:AT4G09130.1) - c.968T>C (EnsemblPlants:AT4G09130.1) Source type: large scale study Cross-references: | |||||||
tmp_4_5816818_C_T | 324 | R>W | 1000Genomes | ||||
Consequence: missense Predictions: - SIFT: deleterious (0.01) Somatic: No Accession: 4:g.5816818C>T Codon: CGG/TGG Consequence type: missense Cytogenetic band: Genomic location: 4:g.5816818C>T Locations: - p.Arg324Trp (EnsemblPlants:AT4G09130.1) - c.970C>T (EnsemblPlants:AT4G09130.1) Source type: large scale study Cross-references: | |||||||
ENSVATH00481809 | 326 | T>I | 1000Genomes | ||||
Consequence: missense Predictions: - SIFT: tolerated (0.07) Somatic: No Accession: 4:g.5816825C>T Codon: ACA/ATA Consequence type: missense Cytogenetic band: Genomic location: 4:g.5816825C>T Locations: - p.Thr326Ile (EnsemblPlants:AT4G09130.1) - c.977C>T (EnsemblPlants:AT4G09130.1) Source type: large scale study Cross-references: | |||||||
ENSVATH00481810 | 329 | R>T | 1000Genomes | ||||
Consequence: missense Predictions: - SIFT: tolerated (0.25) Somatic: No Accession: 4:g.5816834G>C Codon: AGG/ACG Consequence type: missense Cytogenetic band: Genomic location: 4:g.5816834G>C Locations: - p.Arg329Thr (EnsemblPlants:AT4G09130.1) - c.986G>C (EnsemblPlants:AT4G09130.1) Source type: large scale study Cross-references: | |||||||
tmp_4_5816848_C_G | 334 | R>G | 1000Genomes | ||||
Consequence: missense Predictions: - SIFT: tolerated (0.42) Somatic: No Accession: 4:g.5816848C>G Codon: CGA/GGA Consequence type: missense Cytogenetic band: Genomic location: 4:g.5816848C>G Locations: - p.Arg334Gly (EnsemblPlants:AT4G09130.1) - c.1000C>G (EnsemblPlants:AT4G09130.1) Source type: large scale study Cross-references: |