Q9LY91 · AGP6_ARATH

Function

function

Proteoglycan that seems to be implicated in diverse developmental roles such as differentiation, cell-cell recognition, embryogenesis and programmed cell death (By similarity).
Plays an important role during the formation of the nexine layer of the pollen wall (PubMed:25336567).

GO annotations

all annotationsall molecular functionnucleotide bindingmolecular_functionnucleic acid bindingdna bindingchromatin bindingdna-binding transcription factor activityrna bindingcytoskeletal motor activitycatalytic activitynuclease activitysignaling receptor bindingstructural molecule activitytransporter activitybindingprotein bindingtranslation factor activity, rna bindinglipid bindingkinase activitytransferase activityhydrolase activityoxygen bindingenzyme regulator activitycarbohydrate bindingsignaling receptor activitytranslation regulator activitytranscription regulator activityother molecular functionall biological processcarbohydrate metabolic processgeneration of precursor metabolites and energynucleobase-containing compound metabolic processdna metabolic processtranslationlipid metabolic processtransportresponse to stresscell cyclecell communicationsignal transductioncell-cell signalingmulticellular organism developmentcircadian rhythmbiological_processmetabolic processcatabolic processbiosynthetic processresponse to light stimulusresponse to external stimulustropismresponse to biotic stimulusresponse to abiotic stimulusresponse to endogenous stimulusembryo developmentpost-embryonic developmentfruit ripeningabscissionpollinationflower developmentcellular processprogrammed cell deathphotosynthesiscellular component organizationcell growthprotein metabolic processcellular homeostasissecondary metabolic processreproductive processcell differentiationprotein modification processgrowthepigenetic regulation of gene expressionresponse to chemicalanatomical structure developmentregulation of molecular functionother biological processall cellular componentcellular_componentextracellular regioncell wallintracellular anatomical structurenucleusnuclear envelopenucleoplasmnucleoluscytoplasmmitochondrionlysosomeendosomevacuoleperoxisomeendoplasmic reticulumgolgi apparatuscytosolribosomecytoskeletonplasma membranechloroplastplastidthylakoidmembraneexternal encapsulating structureother cellular component
Cell color indicative of number of GO terms
AspectTerm
Cellular Componentextracellular matrix
Cellular Componentplasma membrane
Cellular Componentside of membrane
Biological Processpollen tube growth
Biological Processpollen wall assembly

Names & Taxonomy

Protein names

  • Recommended name
    Classical arabinogalactan protein 6

Gene names

    • Name
      AGP6
    • ORF names
      F18O22_170
    • Ordered locus names
      At5g14380

Organism names

  • Taxonomic identifier
  • Strain
    • cv. Columbia
  • Taxonomic lineage
    Eukaryota > Viridiplantae > Streptophyta > Embryophyta > Tracheophyta > Spermatophyta > Magnoliopsida > eudicotyledons > Gunneridae > Pentapetalae > rosids > malvids > Brassicales > Brassicaceae > Camelineae > Arabidopsis

Accessions

  • Primary accession
    Q9LY91
  • Secondary accessions
    • Q9XFR4

Proteomes

Organism-specific databases

Genome annotation databases

Subcellular Location

Keywords

PTM/Processing

Features

Showing features for signal, chain, lipidation, propeptide.

Type
IDPosition(s)Description
Signal1-20
ChainPRO_000026899521-126Classical arabinogalactan protein 6
Lipidation126GPI-anchor amidated serine
PropeptidePRO_0000268996127-150Removed in mature form

Post-translational modification

O-glycosylated on the hydroxyproline residues.

Keywords

Proteomic databases

Expression

Tissue specificity

Expressed in the anthers.

Induction

Up-regulated by AHL16/TEK.

Developmental stage

Initially detected in the tapetum and microsporocytes during meiosis. Highest expression during the tetrad stage. After microspores were released from tetrad, slightly detected in the tapetum and microspores.

Gene expression databases

Interaction

Protein-protein interaction databases

Family & Domains

Features

Showing features for region.

TypeIDPosition(s)Description
Region19-131Disordered

Sequence similarities

Belongs to the classical AGP family.

Keywords

Phylogenomic databases

Family and domain databases

Sequence

  • Sequence status
    Complete
  • Sequence processing
    The displayed sequence is further processed into a mature form.
  • Length
    150
  • Mass (Da)
    14,569
  • Last updated
    2000-10-01 v1
  • MD5 Checksum
    97319593BFF72C4833A072F68FA5D048
MARQFVVLVLLTLTIATAFAADAPSASPKKSPSPTAAPTKAPTATTKAPSAPTKAPAAAPKSSSASSPKASSPAAEGPVPEDDYSASSPSDSAEAPTVSSPPAPTPDSTSAADGPSDGPTAESPKSGAVTTAKFSVVGTVATVGFFFFSF

Features

Showing features for sequence conflict.

TypeIDPosition(s)Description
Sequence conflict12in Ref. 1; CAB42531
Sequence conflict32in Ref. 1; CAB42531
Sequence conflict142in Ref. 1; CAB42531

Keywords

Sequence databases

Nucleotide SequenceProtein SequenceMolecule TypeStatus
AJ012459
EMBL· GenBank· DDBJ
CAB42531.1
EMBL· GenBank· DDBJ
mRNA
AL163817
EMBL· GenBank· DDBJ
CAB87777.1
EMBL· GenBank· DDBJ
Genomic DNA
CP002688
EMBL· GenBank· DDBJ
AED92024.1
EMBL· GenBank· DDBJ
Genomic DNA
BT006161
EMBL· GenBank· DDBJ
AAP04145.1
EMBL· GenBank· DDBJ
mRNA
BT008563
EMBL· GenBank· DDBJ
AAP40390.1
EMBL· GenBank· DDBJ
mRNA
AK229630
EMBL· GenBank· DDBJ
BAF01475.1
EMBL· GenBank· DDBJ
mRNA

Genome annotation databases

Similar Proteins

Disclaimer

Any medical or genetic information present in this entry is provided for research, educational and informational purposes only. It is not in any way intended to be used as a substitute for professional medical advice, diagnosis, treatment or care. Our staff consists of biologists and biochemists that are not trained to give medical advice.
This website requires cookies, and the limited processing of your personal data in order to function. By using the site you are agreeing to this as outlined in our Privacy Notice.
Help