Q9LVM3 · YCF54_ARATH
- ProteinProtein YCF54, chloroplastic
- GeneYCF54
- StatusUniProtKB reviewed (Swiss-Prot)
- Amino acids211 (go to sequence)
- Protein existenceEvidence at protein level
- Annotation score4/5
Variants
Variant ID(s) | Position(s) | Change | Description | Clinical significance | Provenance | ||
---|---|---|---|---|---|---|---|
ENSVATH08579501 | 15 | T>P | 1000Genomes | ||||
Consequence: missense Predictions: - SIFT: tolerated - low confidence (0.1) Somatic: No Accession: 5:g.23559600A>C Codon: ACC/CCC Consequence type: missense Cytogenetic band: Genomic location: 5:g.23559600A>C Locations: - p.Thr15Pro (EnsemblPlants:AT5G58250.1) - c.43A>C (EnsemblPlants:AT5G58250.1) Source type: large scale study Cross-references: | |||||||
ENSVATH12839859 | 19 | C>F | 1000Genomes | ||||
Consequence: missense Predictions: - SIFT: tolerated - low confidence (0.71) Somatic: No Accession: 5:g.23559613G>T Codon: TGC/TTC Consequence type: missense Cytogenetic band: Genomic location: 5:g.23559613G>T Locations: - p.Cys19Phe (EnsemblPlants:AT5G58250.1) - c.56G>T (EnsemblPlants:AT5G58250.1) Source type: large scale study Cross-references: | |||||||
ENSVATH07444621 | 28 | S>T | 1000Genomes | ||||
Consequence: missense Predictions: - SIFT: tolerated - low confidence (0.41) Somatic: No Accession: 5:g.23559639T>A Codon: TCT/ACT Consequence type: missense Cytogenetic band: Genomic location: 5:g.23559639T>A Locations: - p.Ser28Thr (EnsemblPlants:AT5G58250.1) - c.82T>A (EnsemblPlants:AT5G58250.1) Source type: large scale study Cross-references: | |||||||
ENSVATH03447791 | 31 | P>L | 1000Genomes | ||||
Consequence: missense Predictions: - SIFT: deleterious - low confidence (0.01) Somatic: No Accession: 5:g.23559649C>T Codon: CCC/CTC Consequence type: missense Cytogenetic band: Genomic location: 5:g.23559649C>T Locations: - p.Pro31Leu (EnsemblPlants:AT5G58250.1) - c.92C>T (EnsemblPlants:AT5G58250.1) Source type: large scale study Cross-references: | |||||||
ENSVATH14639060 | 51 | F>L | 1000Genomes | ||||
Consequence: missense Predictions: - SIFT: tolerated - low confidence (0.83) Somatic: No Accession: 5:g.23559708T>C Codon: TTC/CTC Consequence type: missense Cytogenetic band: Genomic location: 5:g.23559708T>C Locations: - p.Phe51Leu (EnsemblPlants:AT5G58250.1) - c.151T>C (EnsemblPlants:AT5G58250.1) Source type: large scale study Cross-references: | |||||||
tmp_5_23559763_A_C | 69 | N>T | 1000Genomes | ||||
Consequence: missense Predictions: - SIFT: tolerated (0.55) Somatic: No Accession: 5:g.23559763A>C Codon: AAC/ACC Consequence type: missense Cytogenetic band: Genomic location: 5:g.23559763A>C Locations: - p.Asn69Thr (EnsemblPlants:AT5G58250.1) - c.206A>C (EnsemblPlants:AT5G58250.1) Source type: large scale study Cross-references: | |||||||
ENSVATH07444622 | 101 | L>I | 1000Genomes | ||||
Consequence: missense Predictions: - SIFT: tolerated (0.08) Somatic: No Accession: 5:g.23559937C>A Codon: CTC/ATC Consequence type: missense Cytogenetic band: Genomic location: 5:g.23559937C>A Locations: - p.Leu101Ile (EnsemblPlants:AT5G58250.1) - c.301C>A (EnsemblPlants:AT5G58250.1) Source type: large scale study Cross-references: | |||||||
tmp_5_23559944_A_T | 103 | Y>F | 1000Genomes | ||||
Consequence: missense Predictions: - SIFT: tolerated (0.74) Somatic: No Accession: 5:g.23559944A>T Codon: TAC/TTC Consequence type: missense Cytogenetic band: Genomic location: 5:g.23559944A>T Locations: - p.Tyr103Phe (EnsemblPlants:AT5G58250.1) - c.308A>T (EnsemblPlants:AT5G58250.1) Source type: large scale study Cross-references: | |||||||
tmp_5_23559967_C_A | 111 | Q>K | 1000Genomes | ||||
Consequence: missense Predictions: - SIFT: deleterious (0.04) Somatic: No Accession: 5:g.23559967C>A Codon: CAA/AAA Consequence type: missense Cytogenetic band: Genomic location: 5:g.23559967C>A Locations: - p.Gln111Lys (EnsemblPlants:AT5G58250.1) - c.331C>A (EnsemblPlants:AT5G58250.1) Source type: large scale study Cross-references: | |||||||
tmp_5_23560223_G_C | 163 | E>Q | 1000Genomes | ||||
Consequence: missense Predictions: - SIFT: deleterious (0.02) Somatic: No Accession: 5:g.23560223G>C Codon: GAA/CAA Consequence type: missense Cytogenetic band: Genomic location: 5:g.23560223G>C Locations: - p.Glu163Gln (EnsemblPlants:AT5G58250.1) - c.487G>C (EnsemblPlants:AT5G58250.1) Source type: large scale study Cross-references: | |||||||
tmp_5_23560346_A_T | 204 | K>* | 1000Genomes | ||||
Consequence: stop gained Somatic: No Accession: 5:g.23560346A>T Codon: AAA/TAA Consequence type: stop gained Cytogenetic band: Genomic location: 5:g.23560346A>T Locations: - p.Lys204Ter (EnsemblPlants:AT5G58250.1) - c.610A>T (EnsemblPlants:AT5G58250.1) Source type: large scale study Cross-references: |