Q9LSI7 · MYB35_ARATH

Function

function

Required for anther development and early tapetal function during microspore maturation (PubMed:18397379, PubMed:21957980).
Regulates callose dissolution required for microspores release from the tetrads (PubMed:18397379).

Features

Showing features for dna binding.

131720406080100120140160180200220240260280300
TypeIDPosition(s)Description
DNA binding37-61H-T-H motif
DNA binding89-112H-T-H motif

GO annotations

all annotationsall molecular functionnucleotide bindingmolecular_functionnucleic acid bindingdna bindingchromatin bindingdna-binding transcription factor activityrna bindingcytoskeletal motor activitycatalytic activitynuclease activitysignaling receptor bindingstructural molecule activitytransporter activitybindingprotein bindingtranslation factor activity, rna bindinglipid bindingkinase activitytransferase activityhydrolase activityoxygen bindingenzyme regulator activitycarbohydrate bindingsignaling receptor activitytranslation regulator activitytranscription regulator activityother molecular functionall biological processcarbohydrate metabolic processgeneration of precursor metabolites and energynucleobase-containing compound metabolic processdna metabolic processtranslationlipid metabolic processtransportresponse to stresscell cyclecell communicationsignal transductioncell-cell signalingmulticellular organism developmentcircadian rhythmbiological_processmetabolic processcatabolic processbiosynthetic processresponse to light stimulusresponse to external stimulustropismresponse to biotic stimulusresponse to abiotic stimulusresponse to endogenous stimulusembryo developmentpost-embryonic developmentfruit ripeningabscissionpollinationflower developmentcellular processprogrammed cell deathphotosynthesiscellular component organizationcell growthprotein metabolic processcellular homeostasissecondary metabolic processreproductive processcell differentiationprotein modification processgrowthepigenetic regulation of gene expressionresponse to chemicalanatomical structure developmentregulation of molecular functionother biological processall cellular componentcellular_componentextracellular regioncell wallintracellular anatomical structurenucleusnuclear envelopenucleoplasmnucleoluscytoplasmmitochondrionlysosomeendosomevacuoleperoxisomeendoplasmic reticulumgolgi apparatuscytosolribosomecytoskeletonplasma membranechloroplastplastidthylakoidmembraneexternal encapsulating structureother cellular component
Cell color indicative of number of GO terms
AspectTerm
Cellular Componentnucleus
Molecular FunctionDNA binding
Molecular FunctionDNA-binding transcription factor activity
Biological Processanther wall tapetum development
Biological Processcallose localization
Biological Processmicrogametogenesis

Keywords

Names & Taxonomy

Protein names

  • Recommended name
    Transcription factor MYB35
  • Alternative names
    • Myb-related protein 35
      (AtMYB35
      )
    • Protein DEFECTIVE IN TAPETAL DEVELOPMENT AND FUNCTION 1

Gene names

    • Name
      MYB35
    • Synonyms
      TDF1
    • ORF names
      MFJ20.16
    • Ordered locus names
      At3g28470

Organism names

  • Taxonomic identifier
  • Strain
    • cv. Columbia
  • Taxonomic lineage
    Eukaryota > Viridiplantae > Streptophyta > Embryophyta > Tracheophyta > Spermatophyta > Magnoliopsida > eudicotyledons > Gunneridae > Pentapetalae > rosids > malvids > Brassicales > Brassicaceae > Camelineae > Arabidopsis

Accessions

  • Primary accession
    Q9LSI7
  • Secondary accessions
    • A0MEZ1
    • O49770

Proteomes

Organism-specific databases

Genome annotation databases

Subcellular Location

Nucleus

Keywords

Phenotypes & Variants

Disruption phenotype

Male-sterile mutant, defective in tapetal development, characterized by irregular and excessive division, redundant cells and leading to dysfunction of the tapetum (PubMed:18397379, PubMed:21957980).
Impaired callose dissolution resulting in altered microspores release from the tetrads and no pollen production (PubMed:18397379).

Variants

We now provide the "Disease & Variants" viewer in its own tab.

The viewer provides 26 variants from UniProt as well as other sources including ClinVar and dbSNP.

Go to variant viewer

PTM/Processing

Features

Showing features for chain.

TypeIDPosition(s)Description
ChainPRO_00004334871-317Transcription factor MYB35

Proteomic databases

Expression

Tissue specificity

Inflorescences-specific (PubMed:18397379).
Accumulates in anthers, especially in tapetum and meiocytes/microsporocytes and microspores during anther development (PubMed:17666023, PubMed:18397379).

Developmental stage

During anther development, first confined to meiocytes, tapetal and middle layer cells. At the microspore stage, mainly expressed in the tapetum and microspores. Later observed in developing pollen grains.

Gene expression databases

Interaction

Binary interactions

TypeEntry 1Entry 2Number of experimentsIntact
BINARY Q9LSI7ASIL1 Q9SYG23EBI-25523050, EBI-4424669
BINARY Q9LSI7GT-3B O804503EBI-25523050, EBI-1571089

Protein-protein interaction databases

Structure

Family & Domains

Features

Showing features for domain.

TypeIDPosition(s)Description
Domain9-65HTH myb-type 1
Domain66-116HTH myb-type 2

Keywords

Phylogenomic databases

Family and domain databases

Sequence

  • Sequence status
    Complete
  • Length
    317
  • Mass (Da)
    35,813
  • Last updated
    2000-10-01 v1
  • Checksum
    A850824AE22CC2B1
MGRPPCCDKSNVKKGLWTEEEDAKILAYVAIHGVGNWSLIPKKAGLNRCGKSCRLRWTNYLRPDLKHDSFSTQEEELIIECHRAIGSRWSSIARKLPGRTDNDVKNHWNTKLKKKLMKMGIDPVTHKPVSQLLAEFRNISGHGNASFKTEPSNNSILTQSNSAWEMMRNTTTNHESYYTNSPMMFTNSSEYQTTPFHFYSHPNHLLNGTTSSCSSSSSSTSITQPNQVPQTPVTNFYWSDFLLSDPVPQVVGSSATSDLTFTQNEHHFNIEAEYISQNIDSKASGTCHSASSFVDEILDKDQEMLSQFPQLLNDFDY

Sequence caution

The sequence AAC83599.1 differs from that shown. Reason: Frameshift
The sequence ABK28578.1 differs from that shown. Reason: Erroneous termination Extended C-terminus.

Features

Showing features for sequence conflict.

TypeIDPosition(s)Description
Sequence conflict234in Ref. 5; AAC83599

Keywords

Sequence databases

Nucleotide SequenceProtein SequenceMolecule TypeStatus
AB026644
EMBL· GenBank· DDBJ
BAB02863.1
EMBL· GenBank· DDBJ
Genomic DNA
CP002686
EMBL· GenBank· DDBJ
AEE77449.1
EMBL· GenBank· DDBJ
Genomic DNA
DQ446711
EMBL· GenBank· DDBJ
ABE65977.1
EMBL· GenBank· DDBJ
mRNA
DQ653114
EMBL· GenBank· DDBJ
ABK28578.1
EMBL· GenBank· DDBJ
mRNA Sequence problems.
AY519591
EMBL· GenBank· DDBJ
AAS10061.1
EMBL· GenBank· DDBJ
mRNA
AF062877
EMBL· GenBank· DDBJ
AAC83599.1
EMBL· GenBank· DDBJ
mRNA Frameshift

Genome annotation databases

Similar Proteins

Disclaimer

Any medical or genetic information present in this entry is provided for research, educational and informational purposes only. It is not in any way intended to be used as a substitute for professional medical advice, diagnosis, treatment or care. Our staff consists of biologists and biochemists that are not trained to give medical advice.
We'd like to inform you that we have updated our Privacy Notice to comply with Europe’s new General Data Protection Regulation (GDPR) that applies since 25 May 2018.
FeedbackHelp