Q9LRM7 · NCED6_ARATH
- Protein9-cis-epoxycarotenoid dioxygenase NCED6, chloroplastic
- GeneNCED6
- StatusUniProtKB reviewed (Swiss-Prot)
- Amino acids577 (go to sequence)
- Protein existenceEvidence at transcript level
- Annotation score5/5
Variants
Variant ID(s) | Position(s) | Change | Description | Clinical significance | Provenance | ||
---|---|---|---|---|---|---|---|
ENSVATH02191674 | 8 | D>N | 1000Genomes | ||||
Consequence: missense Predictions: - SIFT: tolerated - low confidence (0.27) Somatic: No Accession: 3:g.8761460G>A Codon: GAT/AAT Consequence type: missense Cytogenetic band: Genomic location: 3:g.8761460G>A Locations: - p.Asp8Asn (EnsemblPlants:AT3G24220.1) - c.22G>A (EnsemblPlants:AT3G24220.1) Source type: large scale study Cross-references: | |||||||
ENSVATH10929932 | 13 | K>E | 1000Genomes | ||||
Consequence: missense Predictions: - SIFT: tolerated (0.41) Somatic: No Accession: 3:g.8761475A>G Codon: AAG/GAG Consequence type: missense Cytogenetic band: Genomic location: 3:g.8761475A>G Locations: - p.Lys13Glu (EnsemblPlants:AT3G24220.1) - c.37A>G (EnsemblPlants:AT3G24220.1) Source type: large scale study Cross-references: | |||||||
ENSVATH05902219 | 30 | S>T | 1000Genomes | ||||
Consequence: missense Predictions: - SIFT: tolerated (0.83) Somatic: No Accession: 3:g.8761526T>A Codon: TCT/ACT Consequence type: missense Cytogenetic band: Genomic location: 3:g.8761526T>A Locations: - p.Ser30Thr (EnsemblPlants:AT3G24220.1) - c.88T>A (EnsemblPlants:AT3G24220.1) Source type: large scale study Cross-references: | |||||||
ENSVATH05902220 | 31 | R>Q | 1000Genomes | ||||
Consequence: missense Predictions: - SIFT: tolerated (0.68) Somatic: No Accession: 3:g.8761530G>A Codon: CGA/CAA Consequence type: missense Cytogenetic band: Genomic location: 3:g.8761530G>A Locations: - p.Arg31Gln (EnsemblPlants:AT3G24220.1) - c.92G>A (EnsemblPlants:AT3G24220.1) Source type: large scale study Cross-references: | |||||||
ENSVATH10929933 | 35 | I>M | 1000Genomes | ||||
Consequence: missense Predictions: - SIFT: tolerated (0.22) Somatic: No Accession: 3:g.8761543T>G Codon: ATT/ATG Consequence type: missense Cytogenetic band: Genomic location: 3:g.8761543T>G Locations: - p.Ile35Met (EnsemblPlants:AT3G24220.1) - c.105T>G (EnsemblPlants:AT3G24220.1) Source type: large scale study Cross-references: | |||||||
tmp_3_8761558_A_G | 40 | I>M | 1000Genomes | ||||
Consequence: missense Predictions: - SIFT: tolerated (0.22) Somatic: No Accession: 3:g.8761558A>G Codon: ATA/ATG Consequence type: missense Cytogenetic band: Genomic location: 3:g.8761558A>G Locations: - p.Ile40Met (EnsemblPlants:AT3G24220.1) - c.120A>G (EnsemblPlants:AT3G24220.1) Source type: large scale study Cross-references: | |||||||
tmp_3_8761575_T_A | 46 | L>H | 1000Genomes | ||||
Consequence: missense Predictions: - SIFT: tolerated (0.47) Somatic: No Accession: 3:g.8761575T>A Codon: CTC/CAC Consequence type: missense Cytogenetic band: Genomic location: 3:g.8761575T>A Locations: - p.Leu46His (EnsemblPlants:AT3G24220.1) - c.137T>A (EnsemblPlants:AT3G24220.1) Source type: large scale study Cross-references: | |||||||
tmp_3_8761589_C_T | 51 | P>S | 1000Genomes | ||||
Consequence: missense Predictions: - SIFT: tolerated (0.23) Somatic: No Accession: 3:g.8761589C>T Codon: CCG/TCG Consequence type: missense Cytogenetic band: Genomic location: 3:g.8761589C>T Locations: - p.Pro51Ser (EnsemblPlants:AT3G24220.1) - c.151C>T (EnsemblPlants:AT3G24220.1) Source type: large scale study Cross-references: | |||||||
ENSVATH05902221 | 52 | S>P | 1000Genomes | ||||
Consequence: missense Predictions: - SIFT: tolerated (0.25) Somatic: No Accession: 3:g.8761592T>C Codon: TCA/CCA Consequence type: missense Cytogenetic band: Genomic location: 3:g.8761592T>C Locations: - p.Ser52Pro (EnsemblPlants:AT3G24220.1) - c.154T>C (EnsemblPlants:AT3G24220.1) Source type: large scale study Cross-references: | |||||||
tmp_3_8761596_C_T | 53 | P>L | 1000Genomes | ||||
Consequence: missense Predictions: - SIFT: tolerated (0.05) Somatic: No Accession: 3:g.8761596C>T Codon: CCG/CTG Consequence type: missense Cytogenetic band: Genomic location: 3:g.8761596C>T Locations: - p.Pro53Leu (EnsemblPlants:AT3G24220.1) - c.158C>T (EnsemblPlants:AT3G24220.1) Source type: large scale study Cross-references: | |||||||
ENSVATH10929934 | 67 | Q>K | 1000Genomes | ||||
Consequence: missense Predictions: - SIFT: deleterious (0.02) Somatic: No Accession: 3:g.8761637C>A Codon: CAG/AAG Consequence type: missense Cytogenetic band: Genomic location: 3:g.8761637C>A Locations: - p.Gln67Lys (EnsemblPlants:AT3G24220.1) - c.199C>A (EnsemblPlants:AT3G24220.1) Source type: large scale study Cross-references: | |||||||
ENSVATH02191675 | 80 | S>T | 1000Genomes | ||||
Consequence: missense Predictions: - SIFT: tolerated (0.44) Somatic: No Accession: 3:g.8761676T>A Codon: TCT/ACT Consequence type: missense Cytogenetic band: Genomic location: 3:g.8761676T>A Locations: - p.Ser80Thr (EnsemblPlants:AT3G24220.1) - c.238T>A (EnsemblPlants:AT3G24220.1) Source type: large scale study Cross-references: | |||||||
tmp_3_8761681_C_G | 81 | I>M | 1000Genomes | ||||
Consequence: missense Predictions: - SIFT: tolerated (0.08) Somatic: No Accession: 3:g.8761681C>G Codon: ATC/ATG Consequence type: missense Cytogenetic band: Genomic location: 3:g.8761681C>G Locations: - p.Ile81Met (EnsemblPlants:AT3G24220.1) - c.243C>G (EnsemblPlants:AT3G24220.1) Source type: large scale study Cross-references: | |||||||
ENSVATH00344864 | 90 | P>Q | 1000Genomes | ||||
Consequence: missense Predictions: - SIFT: deleterious (0.02) Somatic: No Accession: 3:g.8761707C>A Codon: CCG/CAG Consequence type: missense Cytogenetic band: Genomic location: 3:g.8761707C>A Locations: - p.Pro90Gln (EnsemblPlants:AT3G24220.1) - c.269C>A (EnsemblPlants:AT3G24220.1) Source type: large scale study Cross-references: | |||||||
ENSVATH02191676 | 102 | S>A | 1000Genomes | ||||
Consequence: missense Predictions: - SIFT: tolerated (0.84) Somatic: No Accession: 3:g.8761742T>G Codon: TCA/GCA Consequence type: missense Cytogenetic band: Genomic location: 3:g.8761742T>G Locations: - p.Ser102Ala (EnsemblPlants:AT3G24220.1) - c.304T>G (EnsemblPlants:AT3G24220.1) Source type: large scale study Cross-references: | |||||||
ENSVATH05902222 | 116 | G>D | 1000Genomes | ||||
Consequence: missense Predictions: - SIFT: tolerated (0.64) Somatic: No Accession: 3:g.8761785G>A Codon: GGT/GAT Consequence type: missense Cytogenetic band: Genomic location: 3:g.8761785G>A Locations: - p.Gly116Asp (EnsemblPlants:AT3G24220.1) - c.347G>A (EnsemblPlants:AT3G24220.1) Source type: large scale study Cross-references: | |||||||
ENSVATH10929955 | 122 | Q>R | 1000Genomes | ||||
Consequence: missense Predictions: - SIFT: tolerated (0.8) Somatic: No Accession: 3:g.8761803A>G Codon: CAG/CGG Consequence type: missense Cytogenetic band: Genomic location: 3:g.8761803A>G Locations: - p.Gln122Arg (EnsemblPlants:AT3G24220.1) - c.365A>G (EnsemblPlants:AT3G24220.1) Source type: large scale study Cross-references: | |||||||
ENSVATH00344865 | 132 | I>V | 1000Genomes | ||||
Consequence: missense Predictions: - SIFT: tolerated (0.91) Somatic: No Accession: 3:g.8761832A>G Codon: ATC/GTC Consequence type: missense Cytogenetic band: Genomic location: 3:g.8761832A>G Locations: - p.Ile132Val (EnsemblPlants:AT3G24220.1) - c.394A>G (EnsemblPlants:AT3G24220.1) Source type: large scale study Cross-references: | |||||||
ENSVATH10929956 | 136 | A>P | 1000Genomes | ||||
Consequence: missense Predictions: - SIFT: tolerated (0.55) Somatic: No Accession: 3:g.8761844G>C Codon: GCA/CCA Consequence type: missense Cytogenetic band: Genomic location: 3:g.8761844G>C Locations: - p.Ala136Pro (EnsemblPlants:AT3G24220.1) - c.406G>C (EnsemblPlants:AT3G24220.1) Source type: large scale study Cross-references: | |||||||
tmp_3_8761882_A_C | 148 | L>F | 1000Genomes | ||||
Consequence: missense Predictions: - SIFT: tolerated (0.28) Somatic: No Accession: 3:g.8761882A>C Codon: TTA/TTC Consequence type: missense Cytogenetic band: Genomic location: 3:g.8761882A>C Locations: - p.Leu148Phe (EnsemblPlants:AT3G24220.1) - c.444A>C (EnsemblPlants:AT3G24220.1) Source type: large scale study Cross-references: | |||||||
tmp_3_8761914_G_T | 159 | S>I | 1000Genomes | ||||
Consequence: missense Predictions: - SIFT: deleterious (0.01) Somatic: No Accession: 3:g.8761914G>T Codon: AGT/ATT Consequence type: missense Cytogenetic band: Genomic location: 3:g.8761914G>T Locations: - p.Ser159Ile (EnsemblPlants:AT3G24220.1) - c.476G>T (EnsemblPlants:AT3G24220.1) Source type: large scale study Cross-references: | |||||||
ENSVATH05902223 | 163 | D>E | 1000Genomes | ||||
Consequence: missense Predictions: - SIFT: tolerated (0.48) Somatic: No Accession: 3:g.8761927T>G Codon: GAT/GAG Consequence type: missense Cytogenetic band: Genomic location: 3:g.8761927T>G Locations: - p.Asp163Glu (EnsemblPlants:AT3G24220.1) - c.489T>G (EnsemblPlants:AT3G24220.1) Source type: large scale study Cross-references: | |||||||
ENSVATH05902224 | 187 | S>P | 1000Genomes | ||||
Consequence: missense Predictions: - SIFT: tolerated (1) Somatic: No Accession: 3:g.8761997T>C Codon: TCG/CCG Consequence type: missense Cytogenetic band: Genomic location: 3:g.8761997T>C Locations: - p.Ser187Pro (EnsemblPlants:AT3G24220.1) - c.559T>C (EnsemblPlants:AT3G24220.1) Source type: large scale study Cross-references: | |||||||
tmp_3_8762031_G_A | 198 | G>D | 1000Genomes | ||||
Consequence: missense Predictions: - SIFT: deleterious (0) Somatic: No Accession: 3:g.8762031G>A Codon: GGC/GAC Consequence type: missense Cytogenetic band: Genomic location: 3:g.8762031G>A Locations: - p.Gly198Asp (EnsemblPlants:AT3G24220.1) - c.593G>A (EnsemblPlants:AT3G24220.1) Source type: large scale study Cross-references: | |||||||
ENSVATH00344866 | 213 | G>R | 1000Genomes | ||||
Consequence: missense Predictions: - SIFT: deleterious (0.03) Somatic: No Accession: 3:g.8762075G>A Codon: GGG/AGG Consequence type: missense Cytogenetic band: Genomic location: 3:g.8762075G>A Locations: - p.Gly213Arg (EnsemblPlants:AT3G24220.1) - c.637G>A (EnsemblPlants:AT3G24220.1) Source type: large scale study Cross-references: | |||||||
ENSVATH10929957 | 219 | G>R | 1000Genomes | ||||
Consequence: missense Predictions: - SIFT: tolerated (0.21) Somatic: No Accession: 3:g.8762093G>A Codon: GGG/AGG Consequence type: missense Cytogenetic band: Genomic location: 3:g.8762093G>A Locations: - p.Gly219Arg (EnsemblPlants:AT3G24220.1) - c.655G>A (EnsemblPlants:AT3G24220.1) Source type: large scale study Cross-references: | |||||||
ENSVATH00344867 | 231 | V>I | 1000Genomes | ||||
Consequence: missense Predictions: - SIFT: tolerated (0.12) Somatic: No Accession: 3:g.8762129G>A Codon: GTT/ATT Consequence type: missense Cytogenetic band: Genomic location: 3:g.8762129G>A Locations: - p.Val231Ile (EnsemblPlants:AT3G24220.1) - c.691G>A (EnsemblPlants:AT3G24220.1) Source type: large scale study Cross-references: | |||||||
tmp_3_8762192_G_C | 252 | D>H | 1000Genomes | ||||
Consequence: missense Predictions: - SIFT: deleterious (0.01) Somatic: No Accession: 3:g.8762192G>C Codon: GAC/CAC Consequence type: missense Cytogenetic band: Genomic location: 3:g.8762192G>C Locations: - p.Asp252His (EnsemblPlants:AT3G24220.1) - c.754G>C (EnsemblPlants:AT3G24220.1) Source type: large scale study Cross-references: | |||||||
tmp_3_8762207_C_G | 257 | L>V | 1000Genomes | ||||
Consequence: missense Predictions: - SIFT: tolerated (0.1) Somatic: No Accession: 3:g.8762207C>G Codon: CTT/GTT Consequence type: missense Cytogenetic band: Genomic location: 3:g.8762207C>G Locations: - p.Leu257Val (EnsemblPlants:AT3G24220.1) - c.769C>G (EnsemblPlants:AT3G24220.1) Source type: large scale study Cross-references: | |||||||
ENSVATH00344869 | 264 | G>R | 1000Genomes | ||||
Consequence: missense Predictions: - SIFT: deleterious (0.02) Somatic: No Accession: 3:g.8762228G>A Codon: GGA/AGA Consequence type: missense Cytogenetic band: Genomic location: 3:g.8762228G>A Locations: - p.Gly264Arg (EnsemblPlants:AT3G24220.1) - c.790G>A (EnsemblPlants:AT3G24220.1) Source type: large scale study Cross-references: | |||||||
ENSVATH10929958 | 273 | V>M | 1000Genomes | ||||
Consequence: missense Predictions: - SIFT: tolerated (1) Somatic: No Accession: 3:g.8762255G>A Codon: GTG/ATG Consequence type: missense Cytogenetic band: Genomic location: 3:g.8762255G>A Locations: - p.Val273Met (EnsemblPlants:AT3G24220.1) - c.817G>A (EnsemblPlants:AT3G24220.1) Source type: large scale study Cross-references: | |||||||
tmp_3_8762273_G_T | 279 | V>L | 1000Genomes | ||||
Consequence: missense Predictions: - SIFT: tolerated (0.64) Somatic: No Accession: 3:g.8762273G>T Codon: GTG/TTG Consequence type: missense Cytogenetic band: Genomic location: 3:g.8762273G>T Locations: - p.Val279Leu (EnsemblPlants:AT3G24220.1) - c.835G>T (EnsemblPlants:AT3G24220.1) Source type: large scale study Cross-references: | |||||||
tmp_3_8762279_G_A | 281 | A>T | 1000Genomes | ||||
Consequence: missense Predictions: - SIFT: deleterious (0.01) Somatic: No Accession: 3:g.8762279G>A Codon: GCG/ACG Consequence type: missense Cytogenetic band: Genomic location: 3:g.8762279G>A Locations: - p.Ala281Thr (EnsemblPlants:AT3G24220.1) - c.841G>A (EnsemblPlants:AT3G24220.1) Source type: large scale study Cross-references: | |||||||
ENSVATH10929959 | 281 | A>V | 1000Genomes | ||||
Consequence: missense Predictions: - SIFT: deleterious (0) Somatic: No Accession: 3:g.8762280C>T Codon: GCG/GTG Consequence type: missense Cytogenetic band: Genomic location: 3:g.8762280C>T Locations: - p.Ala281Val (EnsemblPlants:AT3G24220.1) - c.842C>T (EnsemblPlants:AT3G24220.1) Source type: large scale study Cross-references: | |||||||
ENSVATH00344870 | 286 | L>F | 1000Genomes | ||||
Consequence: missense Predictions: - SIFT: deleterious (0.04) Somatic: No Accession: 3:g.8762294C>T Codon: CTC/TTC Consequence type: missense Cytogenetic band: Genomic location: 3:g.8762294C>T Locations: - p.Leu286Phe (EnsemblPlants:AT3G24220.1) - c.856C>T (EnsemblPlants:AT3G24220.1) Source type: large scale study Cross-references: | |||||||
tmp_3_8762297_C_T | 287 | H>Y | 1000Genomes | ||||
Consequence: missense Predictions: - SIFT: tolerated (0.08) Somatic: No Accession: 3:g.8762297C>T Codon: CAT/TAT Consequence type: missense Cytogenetic band: Genomic location: 3:g.8762297C>T Locations: - p.His287Tyr (EnsemblPlants:AT3G24220.1) - c.859C>T (EnsemblPlants:AT3G24220.1) Source type: large scale study Cross-references: | |||||||
ENSVATH02191678 | 299 | L>V | 1000Genomes | ||||
Consequence: missense Predictions: - SIFT: tolerated (0.06) Somatic: No Accession: 3:g.8762333C>G Codon: CTC/GTC Consequence type: missense Cytogenetic band: Genomic location: 3:g.8762333C>G Locations: - p.Leu299Val (EnsemblPlants:AT3G24220.1) - c.895C>G (EnsemblPlants:AT3G24220.1) Source type: large scale study Cross-references: | |||||||
tmp_3_8762347_A_T | 303 | K>N | 1000Genomes | ||||
Consequence: missense Predictions: - SIFT: deleterious (0.05) Somatic: No Accession: 3:g.8762347A>T Codon: AAA/AAT Consequence type: missense Cytogenetic band: Genomic location: 3:g.8762347A>T Locations: - p.Lys303Asn (EnsemblPlants:AT3G24220.1) - c.909A>T (EnsemblPlants:AT3G24220.1) Source type: large scale study Cross-references: | |||||||
ENSVATH05902227 | 307 | C>W | 1000Genomes | ||||
Consequence: missense Predictions: - SIFT: tolerated (0.07) Somatic: No Accession: 3:g.8762359C>G Codon: TGC/TGG Consequence type: missense Cytogenetic band: Genomic location: 3:g.8762359C>G Locations: - p.Cys307Trp (EnsemblPlants:AT3G24220.1) - c.921C>G (EnsemblPlants:AT3G24220.1) Source type: large scale study Cross-references: | |||||||
ENSVATH02191679 | 309 | K>E | 1000Genomes | ||||
Consequence: missense Predictions: - SIFT: tolerated (0.99) Somatic: No Accession: 3:g.8762363A>G Codon: AAA/GAA Consequence type: missense Cytogenetic band: Genomic location: 3:g.8762363A>G Locations: - p.Lys309Glu (EnsemblPlants:AT3G24220.1) - c.925A>G (EnsemblPlants:AT3G24220.1) Source type: large scale study Cross-references: | |||||||
tmp_3_8762426_A_G | 330 | T>A | 1000Genomes | ||||
Consequence: missense Predictions: - SIFT: deleterious (0) Somatic: No Accession: 3:g.8762426A>G Codon: ACC/GCC Consequence type: missense Cytogenetic band: Genomic location: 3:g.8762426A>G Locations: - p.Thr330Ala (EnsemblPlants:AT3G24220.1) - c.988A>G (EnsemblPlants:AT3G24220.1) Source type: large scale study Cross-references: | |||||||
tmp_3_8762436_T_A,C | 333 | F>S | 1000Genomes | ||||
Consequence: missense Predictions: - SIFT: deleterious (0.04) Somatic: No Accession: 3:g.8762436T>C Codon: TTT/TCT Consequence type: missense Cytogenetic band: Genomic location: 3:g.8762436T>C Locations: - p.Phe333Ser (EnsemblPlants:AT3G24220.1) - c.998T>C (EnsemblPlants:AT3G24220.1) Source type: large scale study Cross-references: | |||||||
tmp_3_8762436_T_A,C | 333 | F>Y | 1000Genomes | ||||
Consequence: missense Predictions: - SIFT: tolerated (1) Somatic: No Accession: 3:g.8762436T>A Codon: TTT/TAT Consequence type: missense Cytogenetic band: Genomic location: 3:g.8762436T>A Locations: - p.Phe333Tyr (EnsemblPlants:AT3G24220.1) - c.998T>A (EnsemblPlants:AT3G24220.1) Source type: large scale study Cross-references: | |||||||
ENSVATH05902228 | 342 | V>I | 1000Genomes | ||||
Consequence: missense Predictions: - SIFT: deleterious (0.03) Somatic: No Accession: 3:g.8762462G>A Codon: GTA/ATA Consequence type: missense Cytogenetic band: Genomic location: 3:g.8762462G>A Locations: - p.Val342Ile (EnsemblPlants:AT3G24220.1) - c.1024G>A (EnsemblPlants:AT3G24220.1) Source type: large scale study Cross-references: | |||||||
ENSVATH10929960 | 383 | V>E | 1000Genomes | ||||
Consequence: missense Predictions: - SIFT: deleterious (0) Somatic: No Accession: 3:g.8762586T>A Codon: GTA/GAA Consequence type: missense Cytogenetic band: Genomic location: 3:g.8762586T>A Locations: - p.Val383Glu (EnsemblPlants:AT3G24220.1) - c.1148T>A (EnsemblPlants:AT3G24220.1) Source type: large scale study Cross-references: | |||||||
ENSVATH05902230 | 417 | D>H | 1000Genomes | ||||
Consequence: missense Predictions: - SIFT: tolerated (0.38) Somatic: No Accession: 3:g.8762687G>C Codon: GAC/CAC Consequence type: missense Cytogenetic band: Genomic location: 3:g.8762687G>C Locations: - p.Asp417His (EnsemblPlants:AT3G24220.1) - c.1249G>C (EnsemblPlants:AT3G24220.1) Source type: large scale study Cross-references: | |||||||
ENSVATH10929962 | 418 | T>M | 1000Genomes | ||||
Consequence: missense Predictions: - SIFT: deleterious (0.01) Somatic: No Accession: 3:g.8762691C>T Codon: ACG/ATG Consequence type: missense Cytogenetic band: Genomic location: 3:g.8762691C>T Locations: - p.Thr418Met (EnsemblPlants:AT3G24220.1) - c.1253C>T (EnsemblPlants:AT3G24220.1) Source type: large scale study Cross-references: | |||||||
ENSVATH13990555 | 429 | V>I | 1000Genomes | ||||
Consequence: missense Predictions: - SIFT: tolerated (0.08) Somatic: No Accession: 3:g.8762723G>A Codon: GTT/ATT Consequence type: missense Cytogenetic band: Genomic location: 3:g.8762723G>A Locations: - p.Val429Ile (EnsemblPlants:AT3G24220.1) - c.1285G>A (EnsemblPlants:AT3G24220.1) Source type: large scale study Cross-references: | |||||||
ENSVATH00344872 | 430 | E>Q | 1000Genomes | ||||
Consequence: missense Predictions: - SIFT: deleterious (0.03) Somatic: No Accession: 3:g.8762726G>C Codon: GAA/CAA Consequence type: missense Cytogenetic band: Genomic location: 3:g.8762726G>C Locations: - p.Glu430Gln (EnsemblPlants:AT3G24220.1) - c.1288G>C (EnsemblPlants:AT3G24220.1) Source type: large scale study Cross-references: | |||||||
ENSVATH05902232 | 432 | S>R | 1000Genomes | ||||
Consequence: missense Predictions: - SIFT: deleterious (0) Somatic: No Accession: 3:g.8762734T>G Codon: AGT/AGG Consequence type: missense Cytogenetic band: Genomic location: 3:g.8762734T>G Locations: - p.Ser432Arg (EnsemblPlants:AT3G24220.1) - c.1296T>G (EnsemblPlants:AT3G24220.1) Source type: large scale study Cross-references: | |||||||
ENSVATH05902231 | 432 | S>T | 1000Genomes | ||||
Consequence: missense Predictions: - SIFT: tolerated (0.42) Somatic: No Accession: 3:g.8762733G>C Codon: AGT/ACT Consequence type: missense Cytogenetic band: Genomic location: 3:g.8762733G>C Locations: - p.Ser432Thr (EnsemblPlants:AT3G24220.1) - c.1295G>C (EnsemblPlants:AT3G24220.1) Source type: large scale study Cross-references: | |||||||
ENSVATH05902233 | 453 | N>D | 1000Genomes | ||||
Consequence: missense Predictions: - SIFT: deleterious (0.01) Somatic: No Accession: 3:g.8762795A>G Codon: AAT/GAT Consequence type: missense Cytogenetic band: Genomic location: 3:g.8762795A>G Locations: - p.Asn453Asp (EnsemblPlants:AT3G24220.1) - c.1357A>G (EnsemblPlants:AT3G24220.1) Source type: large scale study Cross-references: | |||||||
tmp_3_8762797_T_G | 453 | N>K | 1000Genomes | ||||
Consequence: missense Predictions: - SIFT: deleterious (0) Somatic: No Accession: 3:g.8762797T>G Codon: AAT/AAG Consequence type: missense Cytogenetic band: Genomic location: 3:g.8762797T>G Locations: - p.Asn453Lys (EnsemblPlants:AT3G24220.1) - c.1359T>G (EnsemblPlants:AT3G24220.1) Source type: large scale study Cross-references: | |||||||
ENSVATH00344873 | 459 | I>V | 1000Genomes | ||||
Consequence: missense Predictions: - SIFT: tolerated (1) Somatic: No Accession: 3:g.8762813A>G Codon: ATA/GTA Consequence type: missense Cytogenetic band: Genomic location: 3:g.8762813A>G Locations: - p.Ile459Val (EnsemblPlants:AT3G24220.1) - c.1375A>G (EnsemblPlants:AT3G24220.1) Source type: large scale study Cross-references: | |||||||
tmp_3_8762900_G_A | 488 | V>I | 1000Genomes | ||||
Consequence: missense Predictions: - SIFT: tolerated (0.11) Somatic: No Accession: 3:g.8762900G>A Codon: GTA/ATA Consequence type: missense Cytogenetic band: Genomic location: 3:g.8762900G>A Locations: - p.Val488Ile (EnsemblPlants:AT3G24220.1) - c.1462G>A (EnsemblPlants:AT3G24220.1) Source type: large scale study Cross-references: | |||||||
ENSVATH13990556 | 490 | I>T | 1000Genomes | ||||
Consequence: missense Predictions: - SIFT: deleterious (0) Somatic: No Accession: 3:g.8762907T>C Codon: ATA/ACA Consequence type: missense Cytogenetic band: Genomic location: 3:g.8762907T>C Locations: - p.Ile490Thr (EnsemblPlants:AT3G24220.1) - c.1469T>C (EnsemblPlants:AT3G24220.1) Source type: large scale study Cross-references: | |||||||
tmp_3_8762916_G_C | 493 | G>A | 1000Genomes | ||||
Consequence: missense Predictions: - SIFT: tolerated (0.13) Somatic: No Accession: 3:g.8762916G>C Codon: GGC/GCC Consequence type: missense Cytogenetic band: Genomic location: 3:g.8762916G>C Locations: - p.Gly493Ala (EnsemblPlants:AT3G24220.1) - c.1478G>C (EnsemblPlants:AT3G24220.1) Source type: large scale study Cross-references: | |||||||
ENSVATH07973860 | 493 | G>S | 1000Genomes | ||||
Consequence: missense Predictions: - SIFT: deleterious (0.04) Somatic: No Accession: 3:g.8762915G>A Codon: GGC/AGC Consequence type: missense Cytogenetic band: Genomic location: 3:g.8762915G>A Locations: - p.Gly493Ser (EnsemblPlants:AT3G24220.1) - c.1477G>A (EnsemblPlants:AT3G24220.1) Source type: large scale study Cross-references: | |||||||
ENSVATH02191680 | 495 | V>I | 1000Genomes | ||||
Consequence: missense Predictions: - SIFT: tolerated (0.11) Somatic: No Accession: 3:g.8762921G>A Codon: GTT/ATT Consequence type: missense Cytogenetic band: Genomic location: 3:g.8762921G>A Locations: - p.Val495Ile (EnsemblPlants:AT3G24220.1) - c.1483G>A (EnsemblPlants:AT3G24220.1) Source type: large scale study Cross-references: | |||||||
tmp_3_8762928_A_T | 497 | E>V | 1000Genomes | ||||
Consequence: missense Predictions: - SIFT: deleterious (0.01) Somatic: No Accession: 3:g.8762928A>T Codon: GAG/GTG Consequence type: missense Cytogenetic band: Genomic location: 3:g.8762928A>T Locations: - p.Glu497Val (EnsemblPlants:AT3G24220.1) - c.1490A>T (EnsemblPlants:AT3G24220.1) Source type: large scale study Cross-references: | |||||||
tmp_3_8762982_G_C | 515 | G>A | 1000Genomes | ||||
Consequence: missense Predictions: - SIFT: tolerated (0.16) Somatic: No Accession: 3:g.8762982G>C Codon: GGA/GCA Consequence type: missense Cytogenetic band: Genomic location: 3:g.8762982G>C Locations: - p.Gly515Ala (EnsemblPlants:AT3G24220.1) - c.1544G>C (EnsemblPlants:AT3G24220.1) Source type: large scale study Cross-references: | |||||||
tmp_3_8762985_A_G | 516 | E>G | 1000Genomes | ||||
Consequence: missense Predictions: - SIFT: tolerated (0.14) Somatic: No Accession: 3:g.8762985A>G Codon: GAA/GGA Consequence type: missense Cytogenetic band: Genomic location: 3:g.8762985A>G Locations: - p.Glu516Gly (EnsemblPlants:AT3G24220.1) - c.1547A>G (EnsemblPlants:AT3G24220.1) Source type: large scale study Cross-references: | |||||||
ENSVATH02191681 | 532 | E>K | 1000Genomes | ||||
Consequence: missense Predictions: - SIFT: tolerated (1) Somatic: No Accession: 3:g.8763032G>A Codon: GAG/AAG Consequence type: missense Cytogenetic band: Genomic location: 3:g.8763032G>A Locations: - p.Glu532Lys (EnsemblPlants:AT3G24220.1) - c.1594G>A (EnsemblPlants:AT3G24220.1) Source type: large scale study Cross-references: | |||||||
ENSVATH02191682 | 544 | T>M | 1000Genomes | ||||
Consequence: missense Predictions: - SIFT: tolerated (0.2) Somatic: No Accession: 3:g.8763069C>T Codon: ACG/ATG Consequence type: missense Cytogenetic band: Genomic location: 3:g.8763069C>T Locations: - p.Thr544Met (EnsemblPlants:AT3G24220.1) - c.1631C>T (EnsemblPlants:AT3G24220.1) Source type: large scale study Cross-references: | |||||||
ENSVATH05902234 | 553 | R>H | 1000Genomes | ||||
Consequence: missense Predictions: - SIFT: deleterious (0.01) Somatic: No Accession: 3:g.8763096G>A Codon: CGC/CAC Consequence type: missense Cytogenetic band: Genomic location: 3:g.8763096G>A Locations: - p.Arg553His (EnsemblPlants:AT3G24220.1) - c.1658G>A (EnsemblPlants:AT3G24220.1) Source type: large scale study Cross-references: | |||||||
ENSVATH13990557 | 569 | E>V | 1000Genomes | ||||
Consequence: missense Predictions: - SIFT: tolerated (0.07) Somatic: No Accession: 3:g.8763144A>T Codon: GAG/GTG Consequence type: missense Cytogenetic band: Genomic location: 3:g.8763144A>T Locations: - p.Glu569Val (EnsemblPlants:AT3G24220.1) - c.1706A>T (EnsemblPlants:AT3G24220.1) Source type: large scale study Cross-references: | |||||||
ENSVATH13990558 | 571 | Q>L | 1000Genomes | ||||
Consequence: missense Predictions: - SIFT: deleterious (0) Somatic: No Accession: 3:g.8763150A>T Codon: CAG/CTG Consequence type: missense Cytogenetic band: Genomic location: 3:g.8763150A>T Locations: - p.Gln571Leu (EnsemblPlants:AT3G24220.1) - c.1712A>T (EnsemblPlants:AT3G24220.1) Source type: large scale study Cross-references: |