Q9LIE7 · PP246_ARATH
- ProteinPentatricopeptide repeat-containing protein At3g22150, chloroplastic
- GenePCMP-E95
- StatusUniProtKB reviewed (Swiss-Prot)
- Amino acids820 (go to sequence)
- Protein existenceEvidence at transcript level
- Annotation score3/5
Function
GO annotations
all annotations | all molecular function | nucleotide binding | molecular_function | nucleic acid binding | dna binding | chromatin binding | dna-binding transcription factor activity | rna binding | cytoskeletal motor activity | catalytic activity | nuclease activity | signaling receptor binding | structural molecule activity | transporter activity | binding | protein binding | translation factor activity, rna binding | lipid binding | kinase activity | transferase activity | hydrolase activity | oxygen binding | enzyme regulator activity | carbohydrate binding | signaling receptor activity | translation regulator activity | transcription regulator activity | other molecular function | all biological process | carbohydrate metabolic process | generation of precursor metabolites and energy | nucleobase-containing compound metabolic process | dna metabolic process | translation | lipid metabolic process | transport | response to stress | cell cycle | cell communication | signal transduction | cell-cell signaling | multicellular organism development | circadian rhythm | biological_process | metabolic process | catabolic process | biosynthetic process | response to light stimulus | response to external stimulus | tropism | response to biotic stimulus | response to abiotic stimulus | response to endogenous stimulus | embryo development | post-embryonic development | fruit ripening | abscission | pollination | flower development | cellular process | programmed cell death | photosynthesis | cellular component organization | cell growth | protein metabolic process | cellular homeostasis | secondary metabolic process | reproductive process | cell differentiation | protein modification process | growth | epigenetic regulation of gene expression | response to chemical | anatomical structure development | regulation of molecular function | other biological process | all cellular component | cellular_component | extracellular region | cell wall | intracellular anatomical structure | nucleus | nuclear envelope | nucleoplasm | nucleolus | cytoplasm | mitochondrion | lysosome | endosome | vacuole | peroxisome | endoplasmic reticulum | golgi apparatus | cytosol | ribosome | cytoskeleton | plasma membrane | chloroplast | plastid | thylakoid | membrane | external encapsulating structure | other cellular component | |||
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Aspect | Term | |
---|---|---|
Cellular Component | chloroplast | |
Cellular Component | mitochondrion | |
Cellular Component | plastid | |
Molecular Function | mRNA binding | |
Biological Process | chloroplast RNA modification | |
Biological Process | mitochondrial mRNA modification |
Names & Taxonomy
Protein names
- Recommended namePentatricopeptide repeat-containing protein At3g22150, chloroplastic
Gene names
Organism names
- Strain
- Taxonomic lineageEukaryota > Viridiplantae > Streptophyta > Embryophyta > Tracheophyta > Spermatophyta > Magnoliopsida > eudicotyledons > Gunneridae > Pentapetalae > rosids > malvids > Brassicales > Brassicaceae > Camelineae > Arabidopsis
Accessions
- Primary accessionQ9LIE7
Proteomes
Organism-specific databases
Genome annotation databases
Subcellular Location
PTM/Processing
Features
Showing features for transit peptide, chain.
Type | ID | Position(s) | Description | |||
---|---|---|---|---|---|---|
Transit peptide | 1-50 | Chloroplast | ||||
Sequence: MAGSALPLPPPPPLSLQSPSQNQTRHSSTFSPPTLTPQTPSIRSRLSKIC | ||||||
Chain | PRO_0000356105 | 51-820 | Pentatricopeptide repeat-containing protein At3g22150, chloroplastic | |||
Sequence: QDGNPQLARQLFDAIPKPTTVLWNTIIIGFICNNLPHEALLFYSRMKKTAPFTNCDAYTYSSTLKACAETKNLKAGKAVHCHLIRCLQNSSRVVHNSLMNMYVSCLNAPDCFEYDVVRKVFDNMRRKNVVAWNTLISWYVKTGRNAEACRQFGIMMRMEVKPSPVSFVNVFPAVSISRSIKKANVFYGLMLKLGDEYVKDLFVVSSAISMYAELGDIESSRRVFDSCVERNIEVWNTMIGVYVQNDCLVESIELFLEAIGSKEIVSDEVTYLLAASAVSALQQVELGRQFHGFVSKNFRELPIVIVNSLMVMYSRCGSVHKSFGVFLSMRERDVVSWNTMISAFVQNGLDDEGLMLVYEMQKQGFKIDYITVTALLSAASNLRNKEIGKQTHAFLIRQGIQFEGMNSYLIDMYSKSGLIRISQKLFEGSGYAERDQATWNSMISGYTQNGHTEKTFLVFRKMLEQNIRPNAVTVASILPACSQIGSVDLGKQLHGFSIRQYLDQNVFVASALVDMYSKAGAIKYAEDMFSQTKERNSVTYTTMILGYGQHGMGERAISLFLSMQESGIKPDAITFVAVLSACSYSGLIDEGLKIFEEMREVYNIQPSSEHYCCITDMLGRVGRVNEAYEFVKGLGEEGNIAELWGSLLGSCKLHGELELAETVSERLAKFDKGKNFSGYEVLLSNMYAEEQKWKSVDKVRRGMREKGLKKEVGRSGIEIAGYVNCFVSRDQEHPHSSEIYDVIDGLAKDMRGDSFLTTLPTVTPSLELDE |
Proteomic databases
PTM databases
Expression
Gene expression databases
Interaction
Protein-protein interaction databases
Structure
Family & Domains
Features
Showing features for compositional bias, region, repeat.
Type | ID | Position(s) | Description | |||
---|---|---|---|---|---|---|
Compositional bias | 1-17 | Pro residues | ||||
Sequence: MAGSALPLPPPPPLSLQ | ||||||
Region | 1-42 | Disordered | ||||
Sequence: MAGSALPLPPPPPLSLQSPSQNQTRHSSTFSPPTLTPQTPSI | ||||||
Compositional bias | 18-42 | Polar residues | ||||
Sequence: SPSQNQTRHSSTFSPPTLTPQTPSI | ||||||
Repeat | 69-99 | PPR 1 | ||||
Sequence: TTVLWNTIIIGFICNNLPHEALLFYSRMKKT | ||||||
Repeat | 106-136 | PPR 2 | ||||
Sequence: DAYTYSSTLKACAETKNLKAGKAVHCHLIRC | ||||||
Repeat | 141-177 | PPR 3 | ||||
Sequence: SRVVHNSLMNMYVSCLNAPDCFEYDVVRKVFDNMRRK | ||||||
Repeat | 178-212 | PPR 4 | ||||
Sequence: NVVAWNTLISWYVKTGRNAEACRQFGIMMRMEVKP | ||||||
Repeat | 213-247 | PPR 5 | ||||
Sequence: SPVSFVNVFPAVSISRSIKKANVFYGLMLKLGDEY | ||||||
Repeat | 250-284 | PPR 6 | ||||
Sequence: DLFVVSSAISMYAELGDIESSRRVFDSCVERNIEV | ||||||
Repeat | 285-316 | PPR 7 | ||||
Sequence: WNTMIGVYVQNDCLVESIELFLEAIGSKEIVS | ||||||
Repeat | 317-347 | PPR 8 | ||||
Sequence: DEVTYLLAASAVSALQQVELGRQFHGFVSKN | ||||||
Repeat | 352-382 | PPR 9 | ||||
Sequence: PIVIVNSLMVMYSRCGSVHKSFGVFLSMRER | ||||||
Repeat | 383-417 | PPR 10 | ||||
Sequence: DVVSWNTMISAFVQNGLDDEGLMLVYEMQKQGFKI | ||||||
Repeat | 418-452 | PPR 11 | ||||
Sequence: DYITVTALLSAASNLRNKEIGKQTHAFLIRQGIQF | ||||||
Repeat | 485-519 | PPR 12 | ||||
Sequence: DQATWNSMISGYTQNGHTEKTFLVFRKMLEQNIRP | ||||||
Repeat | 520-550 | PPR 13 | ||||
Sequence: NAVTVASILPACSQIGSVDLGKQLHGFSIRQ | ||||||
Repeat | 555-585 | PPR 14 | ||||
Sequence: NVFVASALVDMYSKAGAIKYAEDMFSQTKER | ||||||
Repeat | 586-620 | PPR 15 | ||||
Sequence: NSVTYTTMILGYGQHGMGERAISLFLSMQESGIKP | ||||||
Repeat | 621-651 | PPR 16 | ||||
Sequence: DAITFVAVLSACSYSGLIDEGLKIFEEMREV | ||||||
Repeat | 657-691 | PPR 17 | ||||
Sequence: SSEHYCCITDMLGRVGRVNEAYEFVKGLGEEGNIA | ||||||
Region | 693-770 | Type E motif | ||||
Sequence: LWGSLLGSCKLHGELELAETVSERLAKFDKGKNFSGYEVLLSNMYAEEQKWKSVDKVRRGMREKGLKKEVGRSGIEIA | ||||||
Region | 771-801 | Type E+ motif | ||||
Sequence: GYVNCFVSRDQEHPHSSEIYDVIDGLAKDMR |
Sequence similarities
Belongs to the PPR family. PCMP-E subfamily.
Keywords
- Domain
Phylogenomic databases
Family and domain databases
Sequence
- Sequence statusComplete
- Sequence processingThe displayed sequence is further processed into a mature form.
- Length820
- Mass (Da)91,850
- Last updated2000-10-01 v1
- Checksum3702D06B9E5ABF8D
Features
Showing features for compositional bias.
Type | ID | Position(s) | Description | |||
---|---|---|---|---|---|---|
Compositional bias | 1-17 | Pro residues | ||||
Sequence: MAGSALPLPPPPPLSLQ | ||||||
Compositional bias | 18-42 | Polar residues | ||||
Sequence: SPSQNQTRHSSTFSPPTLTPQTPSI |
Keywords
- Technical term
Sequence databases
Nucleotide Sequence | Protein Sequence | Molecule Type | Status | |
---|---|---|---|---|
AP001306 EMBL· GenBank· DDBJ | BAB03063.1 EMBL· GenBank· DDBJ | Genomic DNA | ||
CP002686 EMBL· GenBank· DDBJ | AEE76594.1 EMBL· GenBank· DDBJ | Genomic DNA | ||
CP002686 EMBL· GenBank· DDBJ | ANM64477.1 EMBL· GenBank· DDBJ | Genomic DNA | ||
AK229803 EMBL· GenBank· DDBJ | BAF01634.1 EMBL· GenBank· DDBJ | mRNA |