Q9LIE7 · PP246_ARATH

Function

GO annotations

all annotationsall molecular functionnucleotide bindingmolecular_functionnucleic acid bindingdna bindingchromatin bindingdna-binding transcription factor activityrna bindingcytoskeletal motor activitycatalytic activitynuclease activitysignaling receptor bindingstructural molecule activitytransporter activitybindingprotein bindingtranslation factor activity, rna bindinglipid bindingkinase activitytransferase activityhydrolase activityoxygen bindingenzyme regulator activitycarbohydrate bindingsignaling receptor activitytranslation regulator activitytranscription regulator activityother molecular functionall biological processcarbohydrate metabolic processgeneration of precursor metabolites and energynucleobase-containing compound metabolic processdna metabolic processtranslationlipid metabolic processtransportresponse to stresscell cyclecell communicationsignal transductioncell-cell signalingmulticellular organism developmentcircadian rhythmbiological_processmetabolic processcatabolic processbiosynthetic processresponse to light stimulusresponse to external stimulustropismresponse to biotic stimulusresponse to abiotic stimulusresponse to endogenous stimulusembryo developmentpost-embryonic developmentfruit ripeningabscissionpollinationflower developmentcellular processprogrammed cell deathphotosynthesiscellular component organizationcell growthprotein metabolic processcellular homeostasissecondary metabolic processreproductive processcell differentiationprotein modification processgrowthepigenetic regulation of gene expressionresponse to chemicalanatomical structure developmentregulation of molecular functionother biological processall cellular componentcellular_componentextracellular regioncell wallintracellular anatomical structurenucleusnuclear envelopenucleoplasmnucleoluscytoplasmmitochondrionlysosomeendosomevacuoleperoxisomeendoplasmic reticulumgolgi apparatuscytosolribosomecytoskeletonplasma membranechloroplastplastidthylakoidmembraneexternal encapsulating structureother cellular component
Cell color indicative of number of GO terms
AspectTerm
Cellular Componentchloroplast
Cellular Componentmitochondrion
Cellular Componentplastid
Molecular FunctionmRNA binding
Biological Processchloroplast RNA modification
Biological Processmitochondrial mRNA modification

Names & Taxonomy

Protein names

  • Recommended name
    Pentatricopeptide repeat-containing protein At3g22150, chloroplastic

Gene names

    • Name
      PCMP-E95
    • ORF names
      MKA23.11
    • Ordered locus names
      At3g22150

Organism names

  • Taxonomic identifier
  • Strain
    • cv. Columbia
  • Taxonomic lineage
    Eukaryota > Viridiplantae > Streptophyta > Embryophyta > Tracheophyta > Spermatophyta > Magnoliopsida > eudicotyledons > Gunneridae > Pentapetalae > rosids > malvids > Brassicales > Brassicaceae > Camelineae > Arabidopsis

Accessions

  • Primary accession
    Q9LIE7

Proteomes

Organism-specific databases

Genome annotation databases

Subcellular Location

PTM/Processing

Features

Showing features for transit peptide, chain.

TypeIDPosition(s)Description
Transit peptide1-50Chloroplast
ChainPRO_000035610551-820Pentatricopeptide repeat-containing protein At3g22150, chloroplastic

Proteomic databases

PTM databases

Expression

Gene expression databases

Interaction

Protein-protein interaction databases

Structure

Family & Domains

Features

Showing features for compositional bias, region, repeat.

TypeIDPosition(s)Description
Compositional bias1-17Pro residues
Region1-42Disordered
Compositional bias18-42Polar residues
Repeat69-99PPR 1
Repeat106-136PPR 2
Repeat141-177PPR 3
Repeat178-212PPR 4
Repeat213-247PPR 5
Repeat250-284PPR 6
Repeat285-316PPR 7
Repeat317-347PPR 8
Repeat352-382PPR 9
Repeat383-417PPR 10
Repeat418-452PPR 11
Repeat485-519PPR 12
Repeat520-550PPR 13
Repeat555-585PPR 14
Repeat586-620PPR 15
Repeat621-651PPR 16
Repeat657-691PPR 17
Region693-770Type E motif
Region771-801Type E+ motif

Sequence similarities

Belongs to the PPR family. PCMP-E subfamily.

Keywords

Phylogenomic databases

Family and domain databases

Sequence

  • Sequence status
    Complete
  • Sequence processing
    The displayed sequence is further processed into a mature form.
  • Length
    820
  • Mass (Da)
    91,850
  • Last updated
    2000-10-01 v1
  • Checksum
    3702D06B9E5ABF8D
MAGSALPLPPPPPLSLQSPSQNQTRHSSTFSPPTLTPQTPSIRSRLSKICQDGNPQLARQLFDAIPKPTTVLWNTIIIGFICNNLPHEALLFYSRMKKTAPFTNCDAYTYSSTLKACAETKNLKAGKAVHCHLIRCLQNSSRVVHNSLMNMYVSCLNAPDCFEYDVVRKVFDNMRRKNVVAWNTLISWYVKTGRNAEACRQFGIMMRMEVKPSPVSFVNVFPAVSISRSIKKANVFYGLMLKLGDEYVKDLFVVSSAISMYAELGDIESSRRVFDSCVERNIEVWNTMIGVYVQNDCLVESIELFLEAIGSKEIVSDEVTYLLAASAVSALQQVELGRQFHGFVSKNFRELPIVIVNSLMVMYSRCGSVHKSFGVFLSMRERDVVSWNTMISAFVQNGLDDEGLMLVYEMQKQGFKIDYITVTALLSAASNLRNKEIGKQTHAFLIRQGIQFEGMNSYLIDMYSKSGLIRISQKLFEGSGYAERDQATWNSMISGYTQNGHTEKTFLVFRKMLEQNIRPNAVTVASILPACSQIGSVDLGKQLHGFSIRQYLDQNVFVASALVDMYSKAGAIKYAEDMFSQTKERNSVTYTTMILGYGQHGMGERAISLFLSMQESGIKPDAITFVAVLSACSYSGLIDEGLKIFEEMREVYNIQPSSEHYCCITDMLGRVGRVNEAYEFVKGLGEEGNIAELWGSLLGSCKLHGELELAETVSERLAKFDKGKNFSGYEVLLSNMYAEEQKWKSVDKVRRGMREKGLKKEVGRSGIEIAGYVNCFVSRDQEHPHSSEIYDVIDGLAKDMRGDSFLTTLPTVTPSLELDE

Features

Showing features for compositional bias.

TypeIDPosition(s)Description
Compositional bias1-17Pro residues
Compositional bias18-42Polar residues

Keywords

Sequence databases

Nucleotide SequenceProtein SequenceMolecule TypeStatus
AP001306
EMBL· GenBank· DDBJ
BAB03063.1
EMBL· GenBank· DDBJ
Genomic DNA
CP002686
EMBL· GenBank· DDBJ
AEE76594.1
EMBL· GenBank· DDBJ
Genomic DNA
CP002686
EMBL· GenBank· DDBJ
ANM64477.1
EMBL· GenBank· DDBJ
Genomic DNA
AK229803
EMBL· GenBank· DDBJ
BAF01634.1
EMBL· GenBank· DDBJ
mRNA

Genome annotation databases

Similar Proteins

Disclaimer

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