Q9FM64 · PP431_ARATH
- ProteinPentatricopeptide repeat-containing protein At5g55740, chloroplastic
- GeneCRR21
- StatusUniProtKB reviewed (Swiss-Prot)
- Amino acids830 (go to sequence)
- Protein existenceEvidence at transcript level
- Annotation score3/5
Function
function
Plays a major role in chloroplast RNA editing. Acts as a site-recognition transacting factor involved in the edition of the site 2 of ndhD (ndhD-2), which encodes a subunit of the NDH complex.
GO annotations
all annotations | all molecular function | nucleotide binding | molecular_function | nucleic acid binding | dna binding | chromatin binding | dna-binding transcription factor activity | rna binding | cytoskeletal motor activity | catalytic activity | nuclease activity | signaling receptor binding | structural molecule activity | transporter activity | binding | protein binding | translation factor activity, rna binding | lipid binding | kinase activity | transferase activity | hydrolase activity | oxygen binding | enzyme regulator activity | carbohydrate binding | signaling receptor activity | translation regulator activity | transcription regulator activity | other molecular function | all biological process | carbohydrate metabolic process | generation of precursor metabolites and energy | nucleobase-containing compound metabolic process | dna metabolic process | translation | lipid metabolic process | transport | response to stress | cell cycle | cell communication | signal transduction | cell-cell signaling | multicellular organism development | circadian rhythm | biological_process | metabolic process | catabolic process | biosynthetic process | response to light stimulus | response to external stimulus | tropism | response to biotic stimulus | response to abiotic stimulus | response to endogenous stimulus | embryo development | post-embryonic development | fruit ripening | abscission | pollination | flower development | cellular process | programmed cell death | photosynthesis | cellular component organization | cell growth | protein metabolic process | cellular homeostasis | secondary metabolic process | reproductive process | cell differentiation | protein modification process | growth | epigenetic regulation of gene expression | response to chemical | anatomical structure development | regulation of molecular function | other biological process | all cellular component | cellular_component | extracellular region | cell wall | intracellular anatomical structure | nucleus | nuclear envelope | nucleoplasm | nucleolus | cytoplasm | mitochondrion | lysosome | endosome | vacuole | peroxisome | endoplasmic reticulum | golgi apparatus | cytosol | ribosome | cytoskeleton | plasma membrane | chloroplast | plastid | thylakoid | membrane | external encapsulating structure | other cellular component | |||
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Aspect | Term | |
---|---|---|
Cellular Component | chloroplast | |
Molecular Function | mRNA binding | |
Biological Process | mRNA modification |
Names & Taxonomy
Protein names
- Recommended namePentatricopeptide repeat-containing protein At5g55740, chloroplastic
- Alternative names
Gene names
Organism names
- Strain
- Taxonomic lineageEukaryota > Viridiplantae > Streptophyta > Embryophyta > Tracheophyta > Spermatophyta > Magnoliopsida > eudicotyledons > Gunneridae > Pentapetalae > rosids > malvids > Brassicales > Brassicaceae > Camelineae > Arabidopsis
Accessions
- Primary accessionQ9FM64
Proteomes
Organism-specific databases
Genome annotation databases
Subcellular Location
PTM/Processing
Features
Showing features for transit peptide, chain.
Type | ID | Position(s) | Description | |||
---|---|---|---|---|---|---|
Transit peptide | 1-59 | Chloroplast | ||||
Sequence: MASLPFNTIPNKVPFSVSSKPSSKHHDEQAHSPSSTSYFHRVSSLCKNGEIKEALSLVT | ||||||
Chain | PRO_0000363568 | 60-830 | Pentatricopeptide repeat-containing protein At5g55740, chloroplastic | |||
Sequence: EMDFRNLRIGPEIYGEILQGCVYERDLSTGKQIHARILKNGDFYARNEYIETKLVIFYAKCDALEIAEVLFSKLRVRNVFSWAAIIGVKCRIGLCEGALMGFVEMLENEIFPDNFVVPNVCKACGALKWSRFGRGVHGYVVKSGLEDCVFVASSLADMYGKCGVLDDASKVFDEIPDRNAVAWNALMVGYVQNGKNEEAIRLFSDMRKQGVEPTRVTVSTCLSASANMGGVEEGKQSHAIAIVNGMELDNILGTSLLNFYCKVGLIEYAEMVFDRMFEKDVVTWNLIISGYVQQGLVEDAIYMCQLMRLEKLKYDCVTLATLMSAAARTENLKLGKEVQCYCIRHSFESDIVLASTVMDMYAKCGSIVDAKKVFDSTVEKDLILWNTLLAAYAESGLSGEALRLFYGMQLEGVPPNVITWNLIILSLLRNGQVDEAKDMFLQMQSSGIIPNLISWTTMMNGMVQNGCSEEAILFLRKMQESGLRPNAFSITVALSACAHLASLHIGRTIHGYIIRNLQHSSLVSIETSLVDMYAKCGDINKAEKVFGSKLYSELPLSNAMISAYALYGNLKEAIALYRSLEGVGLKPDNITITNVLSACNHAGDINQAIEIFTDIVSKRSMKPCLEHYGLMVDLLASAGETEKALRLIEEMPFKPDARMIQSLVASCNKQRKTELVDYLSRKLLESEPENSGNYVTISNAYAVEGSWDEVVKMREMMKAKGLKKKPGCSWIQITGEEGVHVFVANDKTHTRINEIQMMLALLLYDMGTGSK |
Proteomic databases
PTM databases
Expression
Gene expression databases
Interaction
Protein-protein interaction databases
Structure
Family & Domains
Features
Showing features for region, repeat.
Type | ID | Position(s) | Description | |||
---|---|---|---|---|---|---|
Region | 15-36 | Disordered | ||||
Sequence: FSVSSKPSSKHHDEQAHSPSST | ||||||
Repeat | 69-103 | PPR 1 | ||||
Sequence: GPEIYGEILQGCVYERDLSTGKQIHARILKNGDFY | ||||||
Repeat | 106-136 | PPR 2 | ||||
Sequence: NEYIETKLVIFYAKCDALEIAEVLFSKLRVR | ||||||
Repeat | 137-171 | PPR 3 | ||||
Sequence: NVFSWAAIIGVKCRIGLCEGALMGFVEMLENEIFP | ||||||
Repeat | 172-206 | PPR 4 | ||||
Sequence: DNFVVPNVCKACGALKWSRFGRGVHGYVVKSGLED | ||||||
Repeat | 207-237 | PPR 5 | ||||
Sequence: CVFVASSLADMYGKCGVLDDASKVFDEIPDR | ||||||
Repeat | 238-272 | PPR 6 | ||||
Sequence: NAVAWNALMVGYVQNGKNEEAIRLFSDMRKQGVEP | ||||||
Repeat | 273-307 | PPR 7 | ||||
Sequence: TRVTVSTCLSASANMGGVEEGKQSHAIAIVNGMEL | ||||||
Repeat | 308-338 | PPR 8 | ||||
Sequence: DNILGTSLLNFYCKVGLIEYAEMVFDRMFEK | ||||||
Repeat | 339-373 | PPR 9 | ||||
Sequence: DVVTWNLIISGYVQQGLVEDAIYMCQLMRLEKLKY | ||||||
Repeat | 374-408 | PPR 10 | ||||
Sequence: DCVTLATLMSAAARTENLKLGKEVQCYCIRHSFES | ||||||
Repeat | 409-439 | PPR 11 | ||||
Sequence: DIVLASTVMDMYAKCGSIVDAKKVFDSTVEK | ||||||
Repeat | 440-474 | PPR 12 | ||||
Sequence: DLILWNTLLAAYAESGLSGEALRLFYGMQLEGVPP | ||||||
Repeat | 475-509 | PPR 13 | ||||
Sequence: NVITWNLIILSLLRNGQVDEAKDMFLQMQSSGIIP | ||||||
Repeat | 510-544 | PPR 14 | ||||
Sequence: NLISWTTMMNGMVQNGCSEEAILFLRKMQESGLRP | ||||||
Repeat | 545-575 | PPR 15 | ||||
Sequence: NAFSITVALSACAHLASLHIGRTIHGYIIRN | ||||||
Repeat | 581-611 | PPR 16 | ||||
Sequence: LVSIETSLVDMYAKCGDINKAEKVFGSKLYS | ||||||
Repeat | 612-646 | PPR 17 | ||||
Sequence: ELPLSNAMISAYALYGNLKEAIALYRSLEGVGLKP | ||||||
Repeat | 647-682 | PPR 18 | ||||
Sequence: DNITITNVLSACNHAGDINQAIEIFTDIVSKRSMKP | ||||||
Repeat | 683-713 | PPR 19 | ||||
Sequence: CLEHYGLMVDLLASAGETEKALRLIEEMPFK | ||||||
Region | 718-793 | Type E motif | ||||
Sequence: MIQSLVASCNKQRKTELVDYLSRKLLESEPENSGNYVTISNAYAVEGSWDEVVKMREMMKAKGLKKKPGCSWIQIT | ||||||
Region | 796-826 | Type E+ motif | ||||
Sequence: EGVHVFVANDKTHTRINEIQMMLALLLYDMG |
Sequence similarities
Belongs to the PPR family. PCMP-E subfamily.
Keywords
- Domain
Phylogenomic databases
Family and domain databases
Sequence
- Sequence statusComplete
- Sequence processingThe displayed sequence is further processed into a mature form.
- Length830
- Mass (Da)92,137
- Last updated2001-03-01 v1
- Checksum921CD6E6F9C056A0
Keywords
- Technical term
Sequence databases
Nucleotide Sequence | Protein Sequence | Molecule Type | Status | |
---|---|---|---|---|
AB009050 EMBL· GenBank· DDBJ | BAB09241.1 EMBL· GenBank· DDBJ | Genomic DNA | ||
CP002688 EMBL· GenBank· DDBJ | AED96675.1 EMBL· GenBank· DDBJ | Genomic DNA |