Q9FJW6 · PP451_ARATH
- ProteinPentatricopeptide repeat-containing protein At5g67570, chloroplastic
- GeneDG1
- StatusUniProtKB reviewed (Swiss-Prot)
- Amino acids798 (go to sequence)
- Protein existenceEvidence at protein level
- Annotation score4/5
Function
function
Involved in the regulation of early chloroplast development and chloroplast gene expression in a SIGF-dependent manner.
GO annotations
all annotations | all molecular function | nucleotide binding | molecular_function | nucleic acid binding | dna binding | chromatin binding | dna-binding transcription factor activity | rna binding | cytoskeletal motor activity | catalytic activity | nuclease activity | signaling receptor binding | structural molecule activity | transporter activity | binding | protein binding | translation factor activity, rna binding | lipid binding | kinase activity | transferase activity | hydrolase activity | oxygen binding | enzyme regulator activity | carbohydrate binding | signaling receptor activity | translation regulator activity | transcription regulator activity | other molecular function | all biological process | carbohydrate metabolic process | generation of precursor metabolites and energy | nucleobase-containing compound metabolic process | dna metabolic process | translation | lipid metabolic process | transport | response to stress | cell cycle | cell communication | signal transduction | cell-cell signaling | multicellular organism development | circadian rhythm | biological_process | metabolic process | catabolic process | biosynthetic process | response to light stimulus | response to external stimulus | tropism | response to biotic stimulus | response to abiotic stimulus | response to endogenous stimulus | embryo development | post-embryonic development | fruit ripening | abscission | pollination | flower development | cellular process | programmed cell death | photosynthesis | cellular component organization | cell growth | protein metabolic process | cellular homeostasis | secondary metabolic process | reproductive process | cell differentiation | protein modification process | growth | epigenetic regulation of gene expression | response to chemical | anatomical structure development | regulation of molecular function | other biological process | all cellular component | cellular_component | extracellular region | cell wall | intracellular anatomical structure | nucleus | nuclear envelope | nucleoplasm | nucleolus | cytoplasm | mitochondrion | lysosome | endosome | vacuole | peroxisome | endoplasmic reticulum | golgi apparatus | cytosol | ribosome | cytoskeleton | plasma membrane | chloroplast | plastid | thylakoid | membrane | external encapsulating structure | other cellular component | |||
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Aspect | Term | |
---|---|---|
Cellular Component | chloroplast | |
Biological Process | chloroplast organization | |
Biological Process | plastid transcription |
Names & Taxonomy
Protein names
- Recommended namePentatricopeptide repeat-containing protein At5g67570, chloroplastic
- Alternative names
Gene names
Organism names
- Strain
- Taxonomic lineageEukaryota > Viridiplantae > Streptophyta > Embryophyta > Tracheophyta > Spermatophyta > Magnoliopsida > eudicotyledons > Gunneridae > Pentapetalae > rosids > malvids > Brassicales > Brassicaceae > Camelineae > Arabidopsis
Accessions
- Primary accessionQ9FJW6
- Secondary accessions
Proteomes
Organism-specific databases
Genome annotation databases
Subcellular Location
PTM/Processing
Features
Showing features for chain, transit peptide.
Type | ID | Position(s) | Description | |||
---|---|---|---|---|---|---|
Chain | PRO_0000363588 | ?-798 | Pentatricopeptide repeat-containing protein At5g67570, chloroplastic | |||
Sequence: MDASVVRFSQSPARVPPEFEPDMEKIKRRLLKYGVDPTPKILNNLRKKEIQKHNRRTKRETESEAEVYTEAQKQSMEEEARFQTLRREYKQFTRSISGKRGGDVGLMVGNPWEGIERVKLKELVSGVRREEVSAGELKKENLKELKKILEKDLRWVLDDDVDVEEFDLDKEFDPAKRWRNEGEAVRVLVDRLSGREINEKHWKFVRMMNQSGLQFTEDQMLKIVDRLGRKQSWKQASAVVHWVYSDKKRKHLRSRFVYTKLLSVLGFARRPQEALQIFNQMLGDRQLYPDMAAYHCIAVTLGQAGLLKELLKVIERMRQKPTKLTKNLRQKNWDPVLEPDLVVYNAILNACVPTLQWKAVSWVFVELRKNGLRPNGATYGLAMEVMLESGKFDRVHDFFRKMKSSGEAPKAITYKVLVRALWREGKIEEAVEAVRDMEQKGVIGTGSVYYELACCLCNNGRWCDAMLEVGRMKRLENCRPLEITFTGLIAASLNGGHVDDCMAIFQYMKDKCDPNIGTANMMLKVYGRNDMFSEAKELFEEIVSRKETHLVPNEYTYSFMLEASARSLQWEYFEHVYQTMVLSGYQMDQTKHASMLIEASRAGKWSLLEHAFDAVLEDGEIPHPLFFTELLCHATAKGDFQRAITLINTVALASFQISEEEWTDLFEEHQDWLTQDNLHKLSDHLIECDYVSEPTVSNLSKSLKSRCGSSSSSAQPLLAVDVTTQSQGEKPEEDLLLQDTTMEDDNSANGEAWEFTETELETLGLEELEIDDDEESSDSDSLSVYDILKEWEESSKKE | ||||||
Transit peptide | 1-? | Chloroplast |
Proteomic databases
Expression
Developmental stage
Expressed in the early stage of development and decreased as the age and developmental state of both the plant and leaves increased.
Gene expression databases
Structure
Family & Domains
Features
Showing features for region, compositional bias, repeat.
Type | ID | Position(s) | Description | |||
---|---|---|---|---|---|---|
Region | 1-21 | Disordered | ||||
Sequence: MDASVVRFSQSPARVPPEFEP | ||||||
Region | 50-73 | Disordered | ||||
Sequence: IQKHNRRTKRETESEAEVYTEAQK | ||||||
Compositional bias | 55-73 | Basic and acidic residues | ||||
Sequence: RRTKRETESEAEVYTEAQK | ||||||
Repeat | 254-284 | PPR 1 | ||||
Sequence: SRFVYTKLLSVLGFARRPQEALQIFNQMLGD | ||||||
Repeat | 290-324 | PPR 2 | ||||
Sequence: DMAAYHCIAVTLGQAGLLKELLKVIERMRQKPTKL | ||||||
Repeat | 340-374 | PPR 3 | ||||
Sequence: DLVVYNAILNACVPTLQWKAVSWVFVELRKNGLRP | ||||||
Repeat | 375-409 | PPR 4 | ||||
Sequence: NGATYGLAMEVMLESGKFDRVHDFFRKMKSSGEAP | ||||||
Repeat | 410-444 | PPR 5 | ||||
Sequence: KAITYKVLVRALWREGKIEEAVEAVRDMEQKGVIG | ||||||
Repeat | 445-480 | PPR 6 | ||||
Sequence: TGSVYYELACCLCNNGRWCDAMLEVGRMKRLENCRP | ||||||
Repeat | 481-511 | PPR 7 | ||||
Sequence: LEITFTGLIAASLNGGHVDDCMAIFQYMKDK | ||||||
Repeat | 515-545 | PPR 8 | ||||
Sequence: NIGTANMMLKVYGRNDMFSEAKELFEEIVSR | ||||||
Repeat | 553-587 | PPR 9 | ||||
Sequence: NEYTYSFMLEASARSLQWEYFEHVYQTMVLSGYQM | ||||||
Repeat | 588-622 | PPR 10 | ||||
Sequence: DQTKHASMLIEASRAGKWSLLEHAFDAVLEDGEIP |
Sequence similarities
Belongs to the PPR family. P subfamily.
Keywords
- Domain
Phylogenomic databases
Family and domain databases
Sequence
- Sequence statusComplete
- Sequence processingThe displayed sequence is further processed into a mature form.
- Length798
- Mass (Da)92,059
- Last updated2009-02-10 v2
- ChecksumA1D1C92BC109A295
Sequence caution
Features
Showing features for compositional bias.
Type | ID | Position(s) | Description | |||
---|---|---|---|---|---|---|
Compositional bias | 55-73 | Basic and acidic residues | ||||
Sequence: RRTKRETESEAEVYTEAQK |
Keywords
- Technical term
Sequence databases
Nucleotide Sequence | Protein Sequence | Molecule Type | Status | |
---|---|---|---|---|
AB013390 EMBL· GenBank· DDBJ | BAB08465.1 EMBL· GenBank· DDBJ | Genomic DNA | Sequence problems. | |
CP002688 EMBL· GenBank· DDBJ | AED98361.1 EMBL· GenBank· DDBJ | Genomic DNA | ||
AK222112 EMBL· GenBank· DDBJ | BAD95068.1 EMBL· GenBank· DDBJ | mRNA | Different initiation |