Q9FIJ4 · RD522_ARATH
- ProteinDNA repair RAD52-like protein 2, chloroplastic
- GeneRAD52-2
- StatusUniProtKB reviewed (Swiss-Prot)
- Amino acids199 (go to sequence)
- Protein existenceEvidence at protein level
- Annotation score3/5
Function
function
Involved in double-stranded DNA break repair.
GO annotations
all annotations | all molecular function | nucleotide binding | molecular_function | nucleic acid binding | dna binding | chromatin binding | dna-binding transcription factor activity | rna binding | cytoskeletal motor activity | catalytic activity | nuclease activity | signaling receptor binding | structural molecule activity | transporter activity | binding | protein binding | translation factor activity, rna binding | lipid binding | kinase activity | transferase activity | hydrolase activity | oxygen binding | enzyme regulator activity | carbohydrate binding | signaling receptor activity | translation regulator activity | transcription regulator activity | other molecular function | all biological process | carbohydrate metabolic process | generation of precursor metabolites and energy | nucleobase-containing compound metabolic process | dna metabolic process | translation | lipid metabolic process | transport | response to stress | cell cycle | cell communication | signal transduction | cell-cell signaling | multicellular organism development | circadian rhythm | biological_process | metabolic process | catabolic process | biosynthetic process | response to light stimulus | response to external stimulus | tropism | response to biotic stimulus | response to abiotic stimulus | response to endogenous stimulus | embryo development | post-embryonic development | fruit ripening | abscission | pollination | flower development | cellular process | programmed cell death | photosynthesis | cellular component organization | cell growth | protein metabolic process | cellular homeostasis | secondary metabolic process | reproductive process | cell differentiation | protein modification process | growth | epigenetic regulation of gene expression | response to chemical | anatomical structure development | regulation of molecular function | other biological process | all cellular component | cellular_component | extracellular region | cell wall | intracellular anatomical structure | nucleus | nuclear envelope | nucleoplasm | nucleolus | cytoplasm | mitochondrion | lysosome | endosome | vacuole | peroxisome | endoplasmic reticulum | golgi apparatus | cytosol | ribosome | cytoskeleton | plasma membrane | chloroplast | plastid | thylakoid | membrane | external encapsulating structure | other cellular component | |||
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Aspect | Term | |
---|---|---|
Cellular Component | chloroplast | |
Cellular Component | plastid | |
Molecular Function | DNA binding | |
Biological Process | double-strand break repair via homologous recombination |
Keywords
- Molecular function
- Biological process
Names & Taxonomy
Protein names
- Recommended nameDNA repair RAD52-like protein 2, chloroplastic
- Alternative names
Gene names
Organism names
- Strain
- Taxonomic lineageEukaryota > Viridiplantae > Streptophyta > Embryophyta > Tracheophyta > Spermatophyta > Magnoliopsida > eudicotyledons > Gunneridae > Pentapetalae > rosids > malvids > Brassicales > Brassicaceae > Camelineae > Arabidopsis
Accessions
- Primary accessionQ9FIJ4
- Secondary accessions
Proteomes
Organism-specific databases
Genome annotation databases
Subcellular Location
UniProt Annotation
GO Annotation
Note: Distributed in a punctate pattern within chloroplast.
Keywords
- Cellular component
Phenotypes & Variants
Disruption phenotype
Reduced fertility, increased sensitivity to mitomycin C, and decreased levels of intrachromosomal recombination.
Variants
We now provide the "Disease & Variants" viewer in its own tab.
The viewer provides 8 variants from UniProt as well as other sources including ClinVar and dbSNP.
PTM/Processing
Features
Showing features for transit peptide, modified residue, chain.
Type | ID | Position(s) | Description | ||
---|---|---|---|---|---|
Transit peptide | 1-40 | Chloroplast | |||
Modified residue | 41 | N-acetylserine | |||
Chain | PRO_0000438187 | 41-199 | DNA repair RAD52-like protein 2, chloroplastic | ||
Keywords
- PTM
Proteomic databases
PTM databases
Expression
Tissue specificity
Expressed in roots and shoots. Expressed at low levels in cauline leaves, flower buds, flowers and siliques.
Gene expression databases
Interaction
Protein-protein interaction databases
Structure
Family & Domains
Sequence similarities
Belongs to the RAD52 family.
Keywords
- Domain
Phylogenomic databases
Family and domain databases
Sequence
- Sequence statusComplete
- Sequence processingThe displayed sequence is further processed into a mature form.
- Length199
- Mass (Da)21,409
- Last updated2001-03-01 v1
- ChecksumF2E5686836FF01B7
Features
Showing features for sequence conflict.
Type | ID | Position(s) | Description | ||
---|---|---|---|---|---|
Sequence conflict | 5 | in Ref. 5; AAM65309 | |||
Sequence conflict | 169 | in Ref. 5; AAM65309 | |||
Keywords
- Technical term
Sequence databases
Nucleotide Sequence | Protein Sequence | Molecule Type | Status | |
---|---|---|---|---|
AB016886 EMBL· GenBank· DDBJ | BAB11334.1 EMBL· GenBank· DDBJ | Genomic DNA | ||
CP002688 EMBL· GenBank· DDBJ | AED95582.1 EMBL· GenBank· DDBJ | Genomic DNA | ||
AK175664 EMBL· GenBank· DDBJ | BAD43427.1 EMBL· GenBank· DDBJ | mRNA | ||
BT024916 EMBL· GenBank· DDBJ | ABD94072.1 EMBL· GenBank· DDBJ | mRNA | ||
AY087773 EMBL· GenBank· DDBJ | AAM65309.1 EMBL· GenBank· DDBJ | mRNA |