Q9FIJ4 · RD522_ARATH

Function

function

Involved in double-stranded DNA break repair.

GO annotations

all annotationsall molecular functionnucleotide bindingmolecular_functionnucleic acid bindingdna bindingchromatin bindingdna-binding transcription factor activityrna bindingcytoskeletal motor activitycatalytic activitynuclease activitysignaling receptor bindingstructural molecule activitytransporter activitybindingprotein bindingtranslation factor activity, rna bindinglipid bindingkinase activitytransferase activityhydrolase activityoxygen bindingenzyme regulator activitycarbohydrate bindingsignaling receptor activitytranslation regulator activitytranscription regulator activityother molecular functionall biological processcarbohydrate metabolic processgeneration of precursor metabolites and energynucleobase-containing compound metabolic processdna metabolic processtranslationlipid metabolic processtransportresponse to stresscell cyclecell communicationsignal transductioncell-cell signalingmulticellular organism developmentcircadian rhythmbiological_processmetabolic processcatabolic processbiosynthetic processresponse to light stimulusresponse to external stimulustropismresponse to biotic stimulusresponse to abiotic stimulusresponse to endogenous stimulusembryo developmentpost-embryonic developmentfruit ripeningabscissionpollinationflower developmentcellular processprogrammed cell deathphotosynthesiscellular component organizationcell growthprotein metabolic processcellular homeostasissecondary metabolic processreproductive processcell differentiationprotein modification processgrowthepigenetic regulation of gene expressionresponse to chemicalanatomical structure developmentregulation of molecular functionother biological processall cellular componentcellular_componentextracellular regioncell wallintracellular anatomical structurenucleusnuclear envelopenucleoplasmnucleoluscytoplasmmitochondrionlysosomeendosomevacuoleperoxisomeendoplasmic reticulumgolgi apparatuscytosolribosomecytoskeletonplasma membranechloroplastplastidthylakoidmembraneexternal encapsulating structureother cellular component
Cell color indicative of number of GO terms
AspectTerm
Cellular Componentchloroplast
Cellular Componentplastid
Molecular FunctionDNA binding
Biological Processdouble-strand break repair via homologous recombination

Keywords

Names & Taxonomy

Protein names

  • Recommended name
    DNA repair RAD52-like protein 2, chloroplastic
  • Alternative names
    • Organellar DNA-binding protein 2

Gene names

    • Name
      RAD52-2
    • Synonyms
      ODB2
    • ORF names
      MCA23.21
    • Ordered locus names
      At5g47870

Organism names

  • Taxonomic identifier
  • Strain
    • cv. Columbia
  • Taxonomic lineage
    Eukaryota > Viridiplantae > Streptophyta > Embryophyta > Tracheophyta > Spermatophyta > Magnoliopsida > eudicotyledons > Gunneridae > Pentapetalae > rosids > malvids > Brassicales > Brassicaceae > Camelineae > Arabidopsis

Accessions

  • Primary accession
    Q9FIJ4
  • Secondary accessions
    • Q8LAJ6

Proteomes

Organism-specific databases

Genome annotation databases

Subcellular Location

Plastid, chloroplast
Note: Distributed in a punctate pattern within chloroplast.

Keywords

Phenotypes & Variants

Disruption phenotype

Reduced fertility, increased sensitivity to mitomycin C, and decreased levels of intrachromosomal recombination.

Variants

We now provide the "Disease & Variants" viewer in its own tab.

The viewer provides 8 variants from UniProt as well as other sources including ClinVar and dbSNP.

Go to variant viewer

PTM/Processing

Features

Showing features for transit peptide, modified residue, chain.

Type
IDPosition(s)Description
Transit peptide1-40Chloroplast
Modified residue41N-acetylserine
ChainPRO_000043818741-199DNA repair RAD52-like protein 2, chloroplastic

Keywords

Proteomic databases

PTM databases

Expression

Tissue specificity

Expressed in roots and shoots. Expressed at low levels in cauline leaves, flower buds, flowers and siliques.

Gene expression databases

Interaction

Protein-protein interaction databases

Structure

Family & Domains

Sequence similarities

Belongs to the RAD52 family.

Keywords

Phylogenomic databases

Family and domain databases

Sequence

  • Sequence status
    Complete
  • Sequence processing
    The displayed sequence is further processed into a mature form.
  • Length
    199
  • Mass (Da)
    21,409
  • Last updated
    2001-03-01 v1
  • Checksum
    F2E5686836FF01B7
MALQVQQTSAAFTISSPSTAAARIKLSPFRTVAVNRGVRCSGGGVGGGDAGKKKAVPNSNYVVPIDKFSSSSSITRPLIEILRDLNKKIPDNIVKSHDPPSTSAATSGFIPWYHANRMLSFYAPGWCGEVRDVIFSENGNVTVVYRLTIRGSDGEAHRESTGTVTTTDDHIEDPVTAAEEIAFCRACARFGLGLYLYHE

Features

Showing features for sequence conflict.

TypeIDPosition(s)Description
Sequence conflict5in Ref. 5; AAM65309
Sequence conflict169in Ref. 5; AAM65309

Keywords

Sequence databases

Nucleotide SequenceProtein SequenceMolecule TypeStatus
AB016886
EMBL· GenBank· DDBJ
BAB11334.1
EMBL· GenBank· DDBJ
Genomic DNA
CP002688
EMBL· GenBank· DDBJ
AED95582.1
EMBL· GenBank· DDBJ
Genomic DNA
AK175664
EMBL· GenBank· DDBJ
BAD43427.1
EMBL· GenBank· DDBJ
mRNA
BT024916
EMBL· GenBank· DDBJ
ABD94072.1
EMBL· GenBank· DDBJ
mRNA
AY087773
EMBL· GenBank· DDBJ
AAM65309.1
EMBL· GenBank· DDBJ
mRNA

Genome annotation databases

Similar Proteins

Disclaimer

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