Q9DUT3 · 1A_PZSVT
- ProteinReplication protein 1a
- StatusUniProtKB reviewed (Swiss-Prot)
- Amino acids962 (go to sequence)
- Protein existenceInferred from homology
- Annotation score3/5
Function
function
Involved in the virus replication. Contains a helicase domain and a methyltransferase domain. The methyltransferase domain is probably involved in viral RNA capping. Involved in the formation of ER membrane spherular invaginations in which RNA replication complexes form (By similarity).
GO annotations
all annotations | all molecular function | virus receptor activity | dna binding | rna binding | cytoskeletal motor activity | catalytic activity | gtpase activity | structural molecule activity | transporter activity | cytoskeletal protein binding | lipid binding | cyclase activity | antioxidant activity | oxidoreductase activity | transferase activity | hydrolase activity | lyase activity | isomerase activity | ligase activity | protein tag activity | cargo receptor activity | histone binding | protein folding chaperone | translation regulator activity | nutrient reservoir activity | receptor ligand activity | molecular transducer activity | molecular adaptor activity | toxin activity | cell adhesion mediator activity | molecular function regulator activity | virus coreceptor activity | catalytic activity, acting on a protein | catalytic activity, acting on dna | catalytic activity, acting on rna | molecular carrier activity | transcription regulator activity | general transcription initiation factor activity | molecular sensor activity | molecular sequestering activity | atp-dependent activity | other molecular function | all biological process | mitotic cell cycle | cytokinesis | cytoplasmic translation | immune system process | muscle system process | circulatory system process | renal system process | respiratory system process | carbohydrate metabolic process | generation of precursor metabolites and energy | dna replication | dna repair | dna recombination | chromatin organization | dna-templated transcription | regulation of dna-templated transcription | trna metabolic process | protein folding | protein glycosylation | amino acid metabolic process | modified amino acid metabolic process | lipid metabolic process | vitamin metabolic process | sulfur compound metabolic process | intracellular protein transport | nucleocytoplasmic transport | autophagy | inflammatory response | mitochondrion organization | cytoskeleton organization | microtubule-based movement | peroxisome organization | lysosome organization | chromosome segregation | cell adhesion | establishment or maintenance of cell polarity | programmed cell death | photosynthesis | mrna metabolic process | snrna metabolic process | vesicle-mediated transport | reproductive process | digestive system process | signaling | cell differentiation | protein catabolic process | extracellular matrix organization | regulatory ncrna-mediated gene silencing | telomere organization | cell junction organization | wound healing | ribosome biogenesis | cilium organization | anatomical structure development | cell motility | nervous system process | endocrine process | protein maturation | transmembrane transport | nucleobase-containing small molecule metabolic process | hepaticobiliary system process | membrane organization | protein-containing complex assembly | cell wall organization or biogenesis | nitrogen cycle metabolic process | protein localization to plasma membrane | defense response to other organism | detoxification | meiotic nuclear division | mitotic nuclear division | mitochondrial gene expression | carbohydrate derivative metabolic process | other biological process | all cellular component | nuclear chromosome | extracellular region | extracellular space | cell wall | nucleus | nuclear envelope | nucleoplasm | chromosome | nucleolus | mitochondrion | lysosome | endosome | vacuole | peroxisome | endoplasmic reticulum | golgi apparatus | lipid droplet | microtubule organizing center | cytosol | ribosome | cytoskeleton | plasma membrane | cilium | plastid | thylakoid | external encapsulating structure | extracellular matrix | cytoplasmic vesicle | organelle | other cellular component | |||
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Aspect | Term | |
---|---|---|
Cellular Component | host cell endoplasmic reticulum membrane | |
Cellular Component | membrane | |
Molecular Function | ATP binding | |
Molecular Function | helicase activity | |
Molecular Function | hydrolase activity, acting on acid anhydrides | |
Molecular Function | mRNA methyltransferase activity | |
Molecular Function | RNA binding | |
Biological Process | methylation | |
Biological Process | mRNA modification | |
Biological Process | RNA processing |
Keywords
- Molecular function
- Ligand
Names & Taxonomy
Protein names
- Recommended nameReplication protein 1a
Including 2 domains:
- Recommended nameATP-dependent helicase
- EC number
- Recommended nameMethyltransferase
- EC number
Gene names
Organism names
- Strain
- Taxonomic lineageViruses > Riboviria > Orthornavirae > Kitrinoviricota > Alsuviricetes > Martellivirales > Bromoviridae > Anulavirus > Pelargonium zonate spot virus
- Virus hosts
Accessions
- Primary accessionQ9DUT3
Proteomes
Subcellular Location
UniProt Annotation
GO Annotation
Host endoplasmic reticulum membrane ; Peripheral membrane protein
Keywords
- Cellular component
PTM/Processing
Features
Showing features for chain.
Type | ID | Position(s) | Description | |||
---|---|---|---|---|---|---|
Chain | PRO_0000402415 | 1-962 | Replication protein 1a | |||
Sequence: MAATSFNVRDLINSNGADAMGVRGLVDAHATKAAEEQFEYIKRSKKVWVRQILSASDGEKMQKRFGGTFDLQLSKNLCPHSFAGAMRQCETLECLSSFPEDSLILDFGGSWLFHWQRQHNVHSCCPVLDARDMARHQERMISMQKCVAHRPGKFESFESPDFCLLKAEDCEVQSPYAISIHGAYDMGFEGLCKAMHSHGTIMLRGTMMFDANMLVFNEGVMEDLNCRWTKEKGDPYGLRGAPCEDMVHFDFIDESTLSYSHSWKNIKSFLTEGGYQIGNVQYVLERCVISYGIMSFKIFAVSGKIPHTRLRHCVWFPKVRDYVNINPSDPRIWSKVRVKLDTVREVEEICFRCPKDVSKIEVMGGESETCGIMSVLYSSTIIVNGMTMMAGERLDVLDYHHVAFSLMLSARRKFDMFGKAMNSLEWKGWVSHFFKSLWPSGDLRDLFGRYFPSLIRYYDKIEFVEKLTHCEVFVNELGMTDDKEQRDVVAEAADVLKNTLLKVAIKMSLDKTFRPAEEKKEERTTTTTVTSSAVGDVDERPAGTVSGPTIQAPSVTQENTVTSLSEPLDGRLAVRLEAMKEYKRYLLKLQKNTESNLAGLWSLCGGTSDSNNLISTEVLRIMRQSDSLVNLHKADGGWLFPNDFEYMVGYNSSGLGEKRPNEVFLVNKDCVLNNNVLLANGVPAQPPKGNINLMDGVAGCGKTTAIKRAFVFESDLIVTANKKSSEDILKAMFRDTPDIGRNKVRTADSVLMHGVAHKVKRVLFDEVSLVHFGQLCAILTISGAEELIGFGDSEQISFVSRDRLFDMKYHKLSPDSSDQQIRTFRCPKDVVECVKIMARKVGARGSKYNNWFTTSAVRKSLGYHKVSSINESPLRPDVHYLTMTQADKASLLSKARETRFRPSVSTIDEVIKTTHESQGISVPKVILWRGKSTKCDLFTDKMELRFGCCHQASRKFRLLFGC |
Interaction
Subunit
Interacts with RNA-directed RNA polymerase 2a.
Structure
Family & Domains
Features
Showing features for domain, region, compositional bias.
Type | ID | Position(s) | Description | |||
---|---|---|---|---|---|---|
Domain | 71-270 | Alphavirus-like MT | ||||
Sequence: LQLSKNLCPHSFAGAMRQCETLECLSSFPEDSLILDFGGSWLFHWQRQHNVHSCCPVLDARDMARHQERMISMQKCVAHRPGKFESFESPDFCLLKAEDCEVQSPYAISIHGAYDMGFEGLCKAMHSHGTIMLRGTMMFDANMLVFNEGVMEDLNCRWTKEKGDPYGLRGAPCEDMVHFDFIDESTLSYSHSWKNIKSFL | ||||||
Region | 79-356 | Methyltransferase | ||||
Sequence: PHSFAGAMRQCETLECLSSFPEDSLILDFGGSWLFHWQRQHNVHSCCPVLDARDMARHQERMISMQKCVAHRPGKFESFESPDFCLLKAEDCEVQSPYAISIHGAYDMGFEGLCKAMHSHGTIMLRGTMMFDANMLVFNEGVMEDLNCRWTKEKGDPYGLRGAPCEDMVHFDFIDESTLSYSHSWKNIKSFLTEGGYQIGNVQYVLERCVISYGIMSFKIFAVSGKIPHTRLRHCVWFPKVRDYVNINPSDPRIWSKVRVKLDTVREVEEICFRCPKD | ||||||
Region | 536-561 | Disordered | ||||
Sequence: DVDERPAGTVSGPTIQAPSVTQENTV | ||||||
Compositional bias | 547-561 | Polar residues | ||||
Sequence: GPTIQAPSVTQENTV | ||||||
Domain | 667-820 | +RNA virus helicase ATP-binding | ||||
Sequence: NKDCVLNNNVLLANGVPAQPPKGNINLMDGVAGCGKTTAIKRAFVFESDLIVTANKKSSEDILKAMFRDTPDIGRNKVRTADSVLMHGVAHKVKRVLFDEVSLVHFGQLCAILTISGAEELIGFGDSEQISFVSRDRLFDMKYHKLSPDSSDQQ | ||||||
Region | 693-941 | ATP-dependent helicase | ||||
Sequence: LMDGVAGCGKTTAIKRAFVFESDLIVTANKKSSEDILKAMFRDTPDIGRNKVRTADSVLMHGVAHKVKRVLFDEVSLVHFGQLCAILTISGAEELIGFGDSEQISFVSRDRLFDMKYHKLSPDSSDQQIRTFRCPKDVVECVKIMARKVGARGSKYNNWFTTSAVRKSLGYHKVSSINESPLRPDVHYLTMTQADKASLLSKARETRFRPSVSTIDEVIKTTHESQGISVPKVILWRGKSTKCDLFTDK | ||||||
Domain | 821-962 | +RNA virus helicase C-terminal | ||||
Sequence: IRTFRCPKDVVECVKIMARKVGARGSKYNNWFTTSAVRKSLGYHKVSSINESPLRPDVHYLTMTQADKASLLSKARETRFRPSVSTIDEVIKTTHESQGISVPKVILWRGKSTKCDLFTDKMELRFGCCHQASRKFRLLFGC |
Sequence similarities
Belongs to the bromoviridae replication protein 1a family.
Family and domain databases
Sequence
- Sequence statusComplete
- Length962
- Mass (Da)108,490
- Last updated2001-03-01 v1
- ChecksumB545F0F84858A891
Features
Showing features for compositional bias.
Type | ID | Position(s) | Description | |||
---|---|---|---|---|---|---|
Compositional bias | 547-561 | Polar residues | ||||
Sequence: GPTIQAPSVTQENTV |
Keywords
- Technical term
Sequence databases
Nucleotide Sequence | Protein Sequence | Molecule Type | Status | |
---|---|---|---|---|
AJ272327 EMBL· GenBank· DDBJ | CAC08526.1 EMBL· GenBank· DDBJ | Genomic RNA |