Q9CAV7 · STKLJ_ARATH

Function

GO annotations

all annotationsall molecular functionnucleotide bindingmolecular_functionnucleic acid bindingdna bindingchromatin bindingdna-binding transcription factor activityrna bindingcytoskeletal motor activitycatalytic activitynuclease activitysignaling receptor bindingstructural molecule activitytransporter activitybindingprotein bindingtranslation factor activity, rna bindinglipid bindingkinase activitytransferase activityhydrolase activityoxygen bindingenzyme regulator activitycarbohydrate bindingsignaling receptor activitytranslation regulator activitytranscription regulator activityother molecular functionall biological processcarbohydrate metabolic processgeneration of precursor metabolites and energynucleobase-containing compound metabolic processdna metabolic processtranslationlipid metabolic processtransportresponse to stresscell cyclecell communicationsignal transductioncell-cell signalingmulticellular organism developmentcircadian rhythmbiological_processmetabolic processcatabolic processbiosynthetic processresponse to light stimulusresponse to external stimulustropismresponse to biotic stimulusresponse to abiotic stimulusresponse to endogenous stimulusembryo developmentpost-embryonic developmentfruit ripeningabscissionpollinationflower developmentcellular processprogrammed cell deathphotosynthesiscellular component organizationcell growthprotein metabolic processcellular homeostasissecondary metabolic processreproductive processcell differentiationprotein modification processgrowthepigenetic regulation of gene expressionresponse to chemicalanatomical structure developmentregulation of molecular functionother biological processall cellular componentcellular_componentextracellular regioncell wallintracellular anatomical structurenucleusnuclear envelopenucleoplasmnucleoluscytoplasmmitochondrionlysosomeendosomevacuoleperoxisomeendoplasmic reticulumgolgi apparatuscytosolribosomecytoskeletonplasma membranechloroplastplastidthylakoidmembraneexternal encapsulating structureother cellular component
Cell color indicative of number of GO terms
AspectTerm
Biological Processregulation of DNA-templated transcription

Keywords

Names & Taxonomy

Protein names

  • Recommended name
    Probable transcription factor At3g04930
  • Alternative names
    • Storekeeper-like protein At3g04930

Gene names

    • ORF names
      T9J14.12
    • Ordered locus names
      At3g04930

Organism names

  • Taxonomic identifier
  • Strain
    • cv. Columbia
  • Taxonomic lineage
    Eukaryota > Viridiplantae > Streptophyta > Embryophyta > Tracheophyta > Spermatophyta > Magnoliopsida > eudicotyledons > Gunneridae > Pentapetalae > rosids > malvids > Brassicales > Brassicaceae > Camelineae > Arabidopsis

Accessions

  • Primary accession
    Q9CAV7
  • Secondary accessions
    • F4J625
    • Q8VYQ3

Proteomes

Organism-specific databases

Genome annotation databases

PTM/Processing

Features

Showing features for chain, modified residue.

TypeIDPosition(s)Description
ChainPRO_00004369841-456Probable transcription factor At3g04930
Modified residue16Phosphoserine

Keywords

Proteomic databases

PTM databases

Expression

Gene expression databases

Interaction

Binary interactions

TypeEntry 1Entry 2Number of experimentsIntact
BINARY Q9CAV7At5g28040 F4K5T44EBI-15198431, EBI-15193831
BINARY Q9CAV7MBD1 Q5XEN53EBI-15198431, EBI-4445335
BINARY Q9CAV7MBD2 Q8LA535EBI-15198431, EBI-4425826

Protein-protein interaction databases

Structure

Family & Domains

Features

Showing features for region, compositional bias.

TypeIDPosition(s)Description
Region1-71Disordered
Compositional bias19-38Acidic residues
Compositional bias47-62Acidic residues

Sequence similarities

Belongs to the GeBP family.

Phylogenomic databases

Family and domain databases

Sequence & Isoforms

Align isoforms (3)
  • Sequence status
    Complete

This entry describes 3 isoforms produced by Alternative splicing.

Q9CAV7-1

This isoform has been chosen as the canonical sequence. All positional information in this entry refers to it. This is also the sequence that appears in the downloadable versions of the entry.

  • Length
    456
  • Mass (Da)
    49,707
  • Last updated
    2001-06-01 v1
  • Checksum
    5C5AB0154DA9AC3C
MTSDHRDALFSLELESPDPDEGGVADGGESDTDEDLRDNDDVVMPGTNEAEAEDDDPEEEDLNSPSTSSLPMVSTISATAVVSGTPTATSSTGAVTVALPAGSAVPVSVIPVDSDPKWHRMTEIVHQRPPIDDSRRLFQRLWTDEDEIELLRGFLDYMTMHRGSSSHPPDTAPFYEQIKSKLQLDFNKNQLVEKLRRLKKKYRNVMSKISSGKEVFFKSPHDQSTFEISRKIWNQTGKIIGFEDNNVMDFEETNNHHNTTNGNYSTFNSPSSNPTLELDSENGIEKKLTMSSSSVSRKRSRSRIGKIEEDNKPVITPSDGPIASNVNLNEAAAVGIGGNLGGLIEETVKNCVSPVIKEMMNGTTSMMMAAMGGGFPGLGGGGGGGGGHGFGSLSPMFTRPFNFGFGVEGGGNKAVADERWRKQQILELEVYSRRLELVQEQIRTTLNELKTMPSGI

Q9CAV7-2

  • Name
    2
  • Note
    May be due to the presence of a micro intron.
  • See also
    sequence in UniParc or sequence clusters in UniRef
  • Differences from canonical
    • 380-416: GGGGGGGGHGFGSLSPMFTRPFNFGFGVEGGGNKAVA → WWWWWWWSWFWLAKPHVYTAVQFRFWCRGRRKQGGCR
    • 417-456: Missing

Q9CAV7-3

Features

Showing features for compositional bias, alternative sequence.

TypeIDPosition(s)Description
Compositional bias19-38Acidic residues
Compositional bias47-62Acidic residues
Alternative sequenceVSP_058468380-416in isoform 2
Alternative sequenceVSP_058469388-396in isoform 3
Alternative sequenceVSP_058470397-456in isoform 3
Alternative sequenceVSP_058471417-456in isoform 2

Keywords

Sequence databases

Nucleotide SequenceProtein SequenceMolecule TypeStatus
AC009465
EMBL· GenBank· DDBJ
AAG51410.1
EMBL· GenBank· DDBJ
Genomic DNA
CP002686
EMBL· GenBank· DDBJ
AEE74159.1
EMBL· GenBank· DDBJ
Genomic DNA
CP002686
EMBL· GenBank· DDBJ
AEE74160.1
EMBL· GenBank· DDBJ
Genomic DNA
AY070136
EMBL· GenBank· DDBJ
AAL47486.1
EMBL· GenBank· DDBJ
mRNA
AY079045
EMBL· GenBank· DDBJ
AAL79595.1
EMBL· GenBank· DDBJ
mRNA
AB493601
EMBL· GenBank· DDBJ
BAH30439.1
EMBL· GenBank· DDBJ
mRNA

Genome annotation databases

Similar Proteins

Disclaimer

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