Q9CAV7 · STKLJ_ARATH
- ProteinProbable transcription factor At3g04930
- StatusUniProtKB reviewed (Swiss-Prot)
- Amino acids456 (go to sequence)
- Protein existenceEvidence at protein level
- Annotation score3/5
Function
GO annotations
all annotations | all molecular function | nucleotide binding | molecular_function | nucleic acid binding | dna binding | chromatin binding | dna-binding transcription factor activity | rna binding | cytoskeletal motor activity | catalytic activity | nuclease activity | signaling receptor binding | structural molecule activity | transporter activity | binding | protein binding | translation factor activity, rna binding | lipid binding | kinase activity | transferase activity | hydrolase activity | oxygen binding | enzyme regulator activity | carbohydrate binding | signaling receptor activity | translation regulator activity | transcription regulator activity | other molecular function | all biological process | carbohydrate metabolic process | generation of precursor metabolites and energy | nucleobase-containing compound metabolic process | dna metabolic process | translation | lipid metabolic process | transport | response to stress | cell cycle | cell communication | signal transduction | cell-cell signaling | multicellular organism development | circadian rhythm | biological_process | metabolic process | catabolic process | biosynthetic process | response to light stimulus | response to external stimulus | tropism | response to biotic stimulus | response to abiotic stimulus | response to endogenous stimulus | embryo development | post-embryonic development | fruit ripening | abscission | pollination | flower development | cellular process | programmed cell death | photosynthesis | cellular component organization | cell growth | protein metabolic process | cellular homeostasis | secondary metabolic process | reproductive process | cell differentiation | protein modification process | growth | epigenetic regulation of gene expression | response to chemical | anatomical structure development | regulation of molecular function | other biological process | all cellular component | cellular_component | extracellular region | cell wall | intracellular anatomical structure | nucleus | nuclear envelope | nucleoplasm | nucleolus | cytoplasm | mitochondrion | lysosome | endosome | vacuole | peroxisome | endoplasmic reticulum | golgi apparatus | cytosol | ribosome | cytoskeleton | plasma membrane | chloroplast | plastid | thylakoid | membrane | external encapsulating structure | other cellular component | |||
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Aspect | Term | |
---|---|---|
Biological Process | regulation of DNA-templated transcription |
Keywords
- Biological process
Names & Taxonomy
Protein names
- Recommended nameProbable transcription factor At3g04930
- Alternative names
Gene names
Organism names
- Strain
- Taxonomic lineageEukaryota > Viridiplantae > Streptophyta > Embryophyta > Tracheophyta > Spermatophyta > Magnoliopsida > eudicotyledons > Gunneridae > Pentapetalae > rosids > malvids > Brassicales > Brassicaceae > Camelineae > Arabidopsis
Accessions
- Primary accessionQ9CAV7
- Secondary accessions
Proteomes
Organism-specific databases
Genome annotation databases
PTM/Processing
Features
Showing features for chain, modified residue.
Type | ID | Position(s) | Description | |||
---|---|---|---|---|---|---|
Chain | PRO_0000436984 | 1-456 | Probable transcription factor At3g04930 | |||
Sequence: MTSDHRDALFSLELESPDPDEGGVADGGESDTDEDLRDNDDVVMPGTNEAEAEDDDPEEEDLNSPSTSSLPMVSTISATAVVSGTPTATSSTGAVTVALPAGSAVPVSVIPVDSDPKWHRMTEIVHQRPPIDDSRRLFQRLWTDEDEIELLRGFLDYMTMHRGSSSHPPDTAPFYEQIKSKLQLDFNKNQLVEKLRRLKKKYRNVMSKISSGKEVFFKSPHDQSTFEISRKIWNQTGKIIGFEDNNVMDFEETNNHHNTTNGNYSTFNSPSSNPTLELDSENGIEKKLTMSSSSVSRKRSRSRIGKIEEDNKPVITPSDGPIASNVNLNEAAAVGIGGNLGGLIEETVKNCVSPVIKEMMNGTTSMMMAAMGGGFPGLGGGGGGGGGHGFGSLSPMFTRPFNFGFGVEGGGNKAVADERWRKQQILELEVYSRRLELVQEQIRTTLNELKTMPSGI | ||||||
Modified residue | 16 | Phosphoserine | ||||
Sequence: S |
Keywords
- PTM
Proteomic databases
PTM databases
Expression
Gene expression databases
Interaction
Binary interactions
Type | Entry 1 | Entry 2 | Number of experiments | Intact | |
---|---|---|---|---|---|
BINARY | Q9CAV7 | At5g28040 F4K5T4 | 4 | EBI-15198431, EBI-15193831 | |
BINARY | Q9CAV7 | MBD1 Q5XEN5 | 3 | EBI-15198431, EBI-4445335 | |
BINARY | Q9CAV7 | MBD2 Q8LA53 | 5 | EBI-15198431, EBI-4425826 |
Protein-protein interaction databases
Structure
Family & Domains
Features
Showing features for region, compositional bias.
Type | ID | Position(s) | Description | |||
---|---|---|---|---|---|---|
Region | 1-71 | Disordered | ||||
Sequence: MTSDHRDALFSLELESPDPDEGGVADGGESDTDEDLRDNDDVVMPGTNEAEAEDDDPEEEDLNSPSTSSLP | ||||||
Compositional bias | 19-38 | Acidic residues | ||||
Sequence: PDEGGVADGGESDTDEDLRD | ||||||
Compositional bias | 47-62 | Acidic residues | ||||
Sequence: TNEAEAEDDDPEEEDL |
Sequence similarities
Belongs to the GeBP family.
Phylogenomic databases
Family and domain databases
Sequence & Isoforms
- Sequence statusComplete
This entry describes 3 isoforms produced by Alternative splicing.
Q9CAV7-1
This isoform has been chosen as the canonical sequence. All positional information in this entry refers to it. This is also the sequence that appears in the downloadable versions of the entry.
- Name1
- Length456
- Mass (Da)49,707
- Last updated2001-06-01 v1
- Checksum5C5AB0154DA9AC3C
Q9CAV7-2
- Name2
- NoteMay be due to the presence of a micro intron.
Q9CAV7-3
- Name3
Features
Showing features for compositional bias, alternative sequence.
Type | ID | Position(s) | Description | |||
---|---|---|---|---|---|---|
Compositional bias | 19-38 | Acidic residues | ||||
Sequence: PDEGGVADGGESDTDEDLRD | ||||||
Compositional bias | 47-62 | Acidic residues | ||||
Sequence: TNEAEAEDDDPEEEDL | ||||||
Alternative sequence | VSP_058468 | 380-416 | in isoform 2 | |||
Sequence: GGGGGGGGHGFGSLSPMFTRPFNFGFGVEGGGNKAVA → WWWWWWWSWFWLAKPHVYTAVQFRFWCRGRRKQGGCR | ||||||
Alternative sequence | VSP_058469 | 388-396 | in isoform 3 | |||
Sequence: HGFGSLSPM → GGFVYNLLY | ||||||
Alternative sequence | VSP_058470 | 397-456 | in isoform 3 | |||
Sequence: Missing | ||||||
Alternative sequence | VSP_058471 | 417-456 | in isoform 2 | |||
Sequence: Missing |
Keywords
- Coding sequence diversity
- Technical term
Sequence databases
Nucleotide Sequence | Protein Sequence | Molecule Type | Status | |
---|---|---|---|---|
AC009465 EMBL· GenBank· DDBJ | AAG51410.1 EMBL· GenBank· DDBJ | Genomic DNA | ||
CP002686 EMBL· GenBank· DDBJ | AEE74159.1 EMBL· GenBank· DDBJ | Genomic DNA | ||
CP002686 EMBL· GenBank· DDBJ | AEE74160.1 EMBL· GenBank· DDBJ | Genomic DNA | ||
AY070136 EMBL· GenBank· DDBJ | AAL47486.1 EMBL· GenBank· DDBJ | mRNA | ||
AY079045 EMBL· GenBank· DDBJ | AAL79595.1 EMBL· GenBank· DDBJ | mRNA | ||
AB493601 EMBL· GenBank· DDBJ | BAH30439.1 EMBL· GenBank· DDBJ | mRNA |