Q94C95 · ATG1A_ARATH
- ProteinSerine/threonine-protein kinase ATG1a
- GeneATG1A
- StatusUniProtKB reviewed (Swiss-Prot)
- Amino acids626 (go to sequence)
- Protein existenceEvidence at protein level
- Annotation score5/5
Variants
Variant ID(s) | Position(s) | Change | Description | Clinical significance | Provenance | ||
---|---|---|---|---|---|---|---|
tmp_3_22944280_C_T | 144 | E>K | 1000Genomes | ||||
Consequence: missense Predictions: - SIFT: deleterious (0.02) Somatic: No Accession: 3:g.22944280C>T Codon: GAA/AAA Consequence type: missense Cytogenetic band: Genomic location: 3:g.22944280C>T Locations: - p.Glu144Lys (EnsemblPlants:AT3G61960.1) - c.430G>A (EnsemblPlants:AT3G61960.1) Source type: large scale study Cross-references: | |||||||
ENSVATH12878038 | 195 | A>S | 1000Genomes | ||||
Consequence: missense Predictions: - SIFT: deleterious (0) Somatic: No Accession: 3:g.22943939C>A Codon: GCC/TCC Consequence type: missense Cytogenetic band: Genomic location: 3:g.22943939C>A Locations: - p.Ala195Ser (EnsemblPlants:AT3G61960.1) - c.583G>T (EnsemblPlants:AT3G61960.1) Source type: large scale study Cross-references: | |||||||
tmp_3_22943358_A_T | 293 | S>T | 1000Genomes | ||||
Consequence: missense Predictions: - SIFT: tolerated (0.24) Somatic: No Accession: 3:g.22943358A>T Codon: TCC/ACC Consequence type: missense Cytogenetic band: Genomic location: 3:g.22943358A>T Locations: - p.Ser293Thr (EnsemblPlants:AT3G61960.1) - c.877T>A (EnsemblPlants:AT3G61960.1) Source type: large scale study Cross-references: | |||||||
ENSVATH00431681 | 303 | F>S | 1000Genomes | ||||
Consequence: missense Predictions: - SIFT: tolerated (0.42) Somatic: No Accession: 3:g.22943327A>G Codon: TTT/TCT Consequence type: missense Cytogenetic band: Genomic location: 3:g.22943327A>G Locations: - p.Phe303Ser (EnsemblPlants:AT3G61960.1) - c.908T>C (EnsemblPlants:AT3G61960.1) Source type: large scale study Cross-references: | |||||||
ENSVATH12878023 | 314 | G>R | 1000Genomes | ||||
Consequence: missense Predictions: - SIFT: tolerated (0.31) Somatic: No Accession: 3:g.22943295C>T Codon: GGG/AGG Consequence type: missense Cytogenetic band: Genomic location: 3:g.22943295C>T Locations: - p.Gly314Arg (EnsemblPlants:AT3G61960.1) - c.940G>A (EnsemblPlants:AT3G61960.1) Source type: large scale study Cross-references: | |||||||
tmp_3_22943257_C_G | 326 | M>I | 1000Genomes | ||||
Consequence: missense Predictions: - SIFT: tolerated (0.37) Somatic: No Accession: 3:g.22943257C>G Codon: ATG/ATC Consequence type: missense Cytogenetic band: Genomic location: 3:g.22943257C>G Locations: - p.Met326Ile (EnsemblPlants:AT3G61960.1) - c.978G>C (EnsemblPlants:AT3G61960.1) Source type: large scale study Cross-references: | |||||||
ENSVATH00431679 | 328 | H>N | 1000Genomes | ||||
Consequence: missense Predictions: - SIFT: tolerated (0.62) Somatic: No Accession: 3:g.22943253G>T Codon: CAT/AAT Consequence type: missense Cytogenetic band: Genomic location: 3:g.22943253G>T Locations: - p.His328Asn (EnsemblPlants:AT3G61960.1) - c.982C>A (EnsemblPlants:AT3G61960.1) Source type: large scale study Cross-references: | |||||||
tmp_3_22943100_C_A | 350 | V>F | 1000Genomes | ||||
Consequence: missense Predictions: - SIFT: tolerated (0.42) Somatic: No Accession: 3:g.22943100C>A Codon: GTT/TTT Consequence type: missense Cytogenetic band: Genomic location: 3:g.22943100C>A Locations: - p.Val350Phe (EnsemblPlants:AT3G61960.1) - c.1048G>T (EnsemblPlants:AT3G61960.1) Source type: large scale study Cross-references: | |||||||
tmp_3_22943054_C_G | 365 | R>P | 1000Genomes | ||||
Consequence: missense Predictions: - SIFT: tolerated (0.19) Somatic: No Accession: 3:g.22943054C>G Codon: CGT/CCT Consequence type: missense Cytogenetic band: Genomic location: 3:g.22943054C>G Locations: - p.Arg365Pro (EnsemblPlants:AT3G61960.1) - c.1094G>C (EnsemblPlants:AT3G61960.1) Source type: large scale study Cross-references: | |||||||
tmp_3_22943009_G_A | 380 | S>L | 1000Genomes | ||||
Consequence: missense Predictions: - SIFT: deleterious (0.05) Somatic: No Accession: 3:g.22943009G>A Codon: TCA/TTA Consequence type: missense Cytogenetic band: Genomic location: 3:g.22943009G>A Locations: - p.Ser380Leu (EnsemblPlants:AT3G61960.1) - c.1139C>T (EnsemblPlants:AT3G61960.1) Source type: large scale study Cross-references: | |||||||
ENSVATH00431677 | 395 | K>R | 1000Genomes | ||||
Consequence: missense Predictions: - SIFT: tolerated (0.49) Somatic: No Accession: 3:g.22942964T>C Codon: AAA/AGA Consequence type: missense Cytogenetic band: Genomic location: 3:g.22942964T>C Locations: - p.Lys395Arg (EnsemblPlants:AT3G61960.1) - c.1184A>G (EnsemblPlants:AT3G61960.1) Source type: large scale study Cross-references: | |||||||
tmp_3_22942896_C_T | 418 | V>I | 1000Genomes | ||||
Consequence: missense Predictions: - SIFT: tolerated (0.21) Somatic: No Accession: 3:g.22942896C>T Codon: GTT/ATT Consequence type: missense Cytogenetic band: Genomic location: 3:g.22942896C>T Locations: - p.Val418Ile (EnsemblPlants:AT3G61960.1) - c.1252G>A (EnsemblPlants:AT3G61960.1) Source type: large scale study Cross-references: | |||||||
tmp_3_22942881_T_G | 423 | T>P | 1000Genomes | ||||
Consequence: missense Predictions: - SIFT: tolerated (0.27) Somatic: No Accession: 3:g.22942881T>G Codon: ACA/CCA Consequence type: missense Cytogenetic band: Genomic location: 3:g.22942881T>G Locations: - p.Thr423Pro (EnsemblPlants:AT3G61960.1) - c.1267A>C (EnsemblPlants:AT3G61960.1) Source type: large scale study Cross-references: | |||||||
ENSVATH12878021 | 430 | I>N | 1000Genomes | ||||
Consequence: missense Predictions: - SIFT: tolerated (0.38) Somatic: No Accession: 3:g.22942859A>T Codon: ATT/AAT Consequence type: missense Cytogenetic band: Genomic location: 3:g.22942859A>T Locations: - p.Ile430Asn (EnsemblPlants:AT3G61960.1) - c.1289T>A (EnsemblPlants:AT3G61960.1) Source type: large scale study Cross-references: | |||||||
ENSVATH06358437 | 453 | E>G | 1000Genomes | ||||
Consequence: missense Predictions: - SIFT: deleterious (0.02) Somatic: No Accession: 3:g.22942790T>C Codon: GAG/GGG Consequence type: missense Cytogenetic band: Genomic location: 3:g.22942790T>C Locations: - p.Glu453Gly (EnsemblPlants:AT3G61960.1) - c.1358A>G (EnsemblPlants:AT3G61960.1) Source type: large scale study Cross-references: | |||||||
ENSVATH14467959 | 474 | W>C | 1000Genomes | ||||
Consequence: missense Predictions: - SIFT: deleterious (0) Somatic: No Accession: 3:g.22942657C>A Codon: TGG/TGT Consequence type: missense Cytogenetic band: Genomic location: 3:g.22942657C>A Locations: - p.Trp474Cys (EnsemblPlants:AT3G61960.1) - c.1422G>T (EnsemblPlants:AT3G61960.1) Source type: large scale study Cross-references: | |||||||
ENSVATH14467958 | 475 | R>K | 1000Genomes | ||||
Consequence: missense Predictions: - SIFT: tolerated (1) Somatic: No Accession: 3:g.22942655C>T Codon: AGA/AAA Consequence type: missense Cytogenetic band: Genomic location: 3:g.22942655C>T Locations: - p.Arg475Lys (EnsemblPlants:AT3G61960.1) - c.1424G>A (EnsemblPlants:AT3G61960.1) Source type: large scale study Cross-references: | |||||||
tmp_3_22942641_T_G | 480 | I>L | 1000Genomes | ||||
Consequence: missense Predictions: - SIFT: deleterious (0.01) Somatic: No Accession: 3:g.22942641T>G Codon: ATA/CTA Consequence type: missense Cytogenetic band: Genomic location: 3:g.22942641T>G Locations: - p.Ile480Leu (EnsemblPlants:AT3G61960.1) - c.1438A>C (EnsemblPlants:AT3G61960.1) Source type: large scale study Cross-references: | |||||||
ENSVATH06358435 | 497 | P>T | 1000Genomes | ||||
Consequence: missense Predictions: - SIFT: tolerated (0.66) Somatic: No Accession: 3:g.22942590G>T Codon: CCA/ACA Consequence type: missense Cytogenetic band: Genomic location: 3:g.22942590G>T Locations: - p.Pro497Thr (EnsemblPlants:AT3G61960.1) - c.1489C>A (EnsemblPlants:AT3G61960.1) Source type: large scale study Cross-references: | |||||||
tmp_3_22942583_G_A | 499 | T>M | 1000Genomes | ||||
Consequence: missense Predictions: - SIFT: tolerated (0.11) Somatic: No Accession: 3:g.22942583G>A Codon: ACG/ATG Consequence type: missense Cytogenetic band: Genomic location: 3:g.22942583G>A Locations: - p.Thr499Met (EnsemblPlants:AT3G61960.1) - c.1496C>T (EnsemblPlants:AT3G61960.1) Source type: large scale study Cross-references: | |||||||
ENSVATH12878019 | 502 | E>G | 1000Genomes | ||||
Consequence: missense Predictions: - SIFT: tolerated (0.14) Somatic: No Accession: 3:g.22942574T>C Codon: GAG/GGG Consequence type: missense Cytogenetic band: Genomic location: 3:g.22942574T>C Locations: - p.Glu502Gly (EnsemblPlants:AT3G61960.1) - c.1505A>G (EnsemblPlants:AT3G61960.1) Source type: large scale study Cross-references: | |||||||
ENSVATH00431675 | 526 | L>F | 1000Genomes | ||||
Consequence: missense Predictions: - SIFT: tolerated (0.3) Somatic: No Accession: 3:g.22942501T>A Codon: TTA/TTT Consequence type: missense Cytogenetic band: Genomic location: 3:g.22942501T>A Locations: - p.Leu526Phe (EnsemblPlants:AT3G61960.1) - c.1578A>T (EnsemblPlants:AT3G61960.1) Source type: large scale study Cross-references: | |||||||
ENSVATH12878018 | 536 | L>I | 1000Genomes | ||||
Consequence: missense Predictions: - SIFT: tolerated (1) Somatic: No Accession: 3:g.22942473G>T Codon: CTA/ATA Consequence type: missense Cytogenetic band: Genomic location: 3:g.22942473G>T Locations: - p.Leu536Ile (EnsemblPlants:AT3G61960.1) - c.1606C>A (EnsemblPlants:AT3G61960.1) Source type: large scale study Cross-references: | |||||||
tmp_3_22942467_C_T | 538 | E>K | 1000Genomes | ||||
Consequence: missense Predictions: - SIFT: tolerated (0.38) Somatic: No Accession: 3:g.22942467C>T Codon: GAA/AAA Consequence type: missense Cytogenetic band: Genomic location: 3:g.22942467C>T Locations: - p.Glu538Lys (EnsemblPlants:AT3G61960.1) - c.1612G>A (EnsemblPlants:AT3G61960.1) Source type: large scale study Cross-references: | |||||||
ENSVATH06358434 | 552 | I>V | 1000Genomes | ||||
Consequence: missense Predictions: - SIFT: tolerated (0.1) Somatic: No Accession: 3:g.22942349T>C Codon: ATA/GTA Consequence type: missense Cytogenetic band: Genomic location: 3:g.22942349T>C Locations: - p.Ile552Val (EnsemblPlants:AT3G61960.1) - c.1654A>G (EnsemblPlants:AT3G61960.1) Source type: large scale study Cross-references: | |||||||
ENSVATH06358432 | 565 | A>T | 1000Genomes | ||||
Consequence: missense Predictions: - SIFT: deleterious (0.01) Somatic: No Accession: 3:g.22942154C>T Codon: GCT/ACT Consequence type: missense Cytogenetic band: Genomic location: 3:g.22942154C>T Locations: - p.Ala565Thr (EnsemblPlants:AT3G61960.1) - c.1693G>A (EnsemblPlants:AT3G61960.1) Source type: large scale study Cross-references: | |||||||
ENSVATH12877999 | 572 | K>R | 1000Genomes | ||||
Consequence: missense Predictions: - SIFT: tolerated (0.6) Somatic: No Accession: 3:g.22942132T>C Codon: AAA/AGA Consequence type: missense Cytogenetic band: Genomic location: 3:g.22942132T>C Locations: - p.Lys572Arg (EnsemblPlants:AT3G61960.1) - c.1715A>G (EnsemblPlants:AT3G61960.1) Source type: large scale study Cross-references: | |||||||
ENSVATH06358431 | 577 | T>A | 1000Genomes | ||||
Consequence: missense Predictions: - SIFT: tolerated (1) Somatic: No Accession: 3:g.22942118T>C Codon: ACA/GCA Consequence type: missense Cytogenetic band: Genomic location: 3:g.22942118T>C Locations: - p.Thr577Ala (EnsemblPlants:AT3G61960.1) - c.1729A>G (EnsemblPlants:AT3G61960.1) Source type: large scale study Cross-references: | |||||||
ENSVATH12877998 | 584 | L>I | 1000Genomes | ||||
Consequence: missense Predictions: - SIFT: tolerated (0.4) Somatic: No Accession: 3:g.22942097G>T Codon: CTT/ATT Consequence type: missense Cytogenetic band: Genomic location: 3:g.22942097G>T Locations: - p.Leu584Ile (EnsemblPlants:AT3G61960.1) - c.1750C>A (EnsemblPlants:AT3G61960.1) Source type: large scale study Cross-references: | |||||||
tmp_3_22942063_G_A | 595 | T>I | 1000Genomes | ||||
Consequence: missense Predictions: - SIFT: deleterious (0.02) Somatic: No Accession: 3:g.22942063G>A Codon: ACT/ATT Consequence type: missense Cytogenetic band: Genomic location: 3:g.22942063G>A Locations: - p.Thr595Ile (EnsemblPlants:AT3G61960.1) - c.1784C>T (EnsemblPlants:AT3G61960.1) Source type: large scale study Cross-references: | |||||||
ENSVATH02535823 | 601 | S>P | 1000Genomes | ||||
Consequence: missense Predictions: - SIFT: tolerated (1) Somatic: No Accession: 3:g.22942046A>G Codon: TCT/CCT Consequence type: missense Cytogenetic band: Genomic location: 3:g.22942046A>G Locations: - p.Ser601Pro (EnsemblPlants:AT3G61960.1) - c.1801T>C (EnsemblPlants:AT3G61960.1) Source type: large scale study Cross-references: | |||||||
tmp_3_22942033_G_A | 605 | T>I | 1000Genomes | ||||
Consequence: missense Predictions: - SIFT: deleterious (0.03) Somatic: No Accession: 3:g.22942033G>A Codon: ACC/ATC Consequence type: missense Cytogenetic band: Genomic location: 3:g.22942033G>A Locations: - p.Thr605Ile (EnsemblPlants:AT3G61960.1) - c.1814C>T (EnsemblPlants:AT3G61960.1) Source type: large scale study Cross-references: | |||||||
tmp_3_22941995_T_C | 618 | N>D | 1000Genomes | ||||
Consequence: missense Predictions: - SIFT: tolerated (0.21) Somatic: No Accession: 3:g.22941995T>C Codon: AAC/GAC Consequence type: missense Cytogenetic band: Genomic location: 3:g.22941995T>C Locations: - p.Asn618Asp (EnsemblPlants:AT3G61960.1) - c.1852A>G (EnsemblPlants:AT3G61960.1) Source type: large scale study Cross-references: |