Q90XD1 · Q90XD1_DANRE

Function

Features

Showing features for dna binding.

148550100150200250300350400450
TypeIDPosition(s)Description
DNA binding108-176HMG box

GO annotations

all annotationsall molecular functionvirus receptor activitydna bindingrna bindingcytoskeletal motor activitycatalytic activitygtpase activitystructural molecule activitytransporter activitycytoskeletal protein bindinglipid bindingcyclase activityantioxidant activityoxidoreductase activitytransferase activityhydrolase activitylyase activityisomerase activityligase activityprotein tag activitycargo receptor activityhistone bindingprotein folding chaperonetranslation regulator activitynutrient reservoir activityreceptor ligand activitymolecular transducer activitymolecular adaptor activitytoxin activitycell adhesion mediator activitymolecular function regulator activityvirus coreceptor activitycatalytic activity, acting on a proteincatalytic activity, acting on dnacatalytic activity, acting on rnamolecular carrier activitytranscription regulator activitygeneral transcription initiation factor activitymolecular sensor activitymolecular sequestering activityatp-dependent activityother molecular functionall biological processmitotic cell cyclecytokinesiscytoplasmic translationimmune system processmuscle system processcirculatory system processrenal system processrespiratory system processcarbohydrate metabolic processgeneration of precursor metabolites and energydna replicationdna repairdna recombinationchromatin organizationdna-templated transcriptionregulation of dna-templated transcriptiontrna metabolic processprotein foldingprotein glycosylationamino acid metabolic processmodified amino acid metabolic processlipid metabolic processvitamin metabolic processsulfur compound metabolic processintracellular protein transportnucleocytoplasmic transportautophagyinflammatory responsemitochondrion organizationcytoskeleton organizationmicrotubule-based movementperoxisome organizationlysosome organizationchromosome segregationcell adhesionestablishment or maintenance of cell polarityprogrammed cell deathphotosynthesismrna metabolic processsnrna metabolic processvesicle-mediated transportreproductive processdigestive system processsignalingcell differentiationprotein catabolic processextracellular matrix organizationregulatory ncrna-mediated gene silencingtelomere organizationcell junction organizationwound healingribosome biogenesiscilium organizationanatomical structure developmentcell motilitynervous system processendocrine processprotein maturationtransmembrane transportnucleobase-containing small molecule metabolic processhepaticobiliary system processmembrane organizationprotein-containing complex assemblycell wall organization or biogenesisnitrogen cycle metabolic processprotein localization to plasma membranedefense response to other organismdetoxificationmeiotic nuclear divisionmitotic nuclear divisionmitochondrial gene expressioncarbohydrate derivative metabolic processother biological processall cellular componentnuclear chromosomeextracellular regionextracellular spacecell wallnucleusnuclear envelopenucleoplasmchromosomenucleolusmitochondrionlysosomeendosomevacuoleperoxisomeendoplasmic reticulumgolgi apparatuslipid dropletmicrotubule organizing centercytosolribosomecytoskeletonplasma membraneciliumplastidthylakoidexternal encapsulating structureextracellular matrixcytoplasmic vesicleorganelleother cellular component
Cell color indicative of number of GO terms
AspectTerm
Cellular Componentnucleus
Molecular FunctionDNA-binding transcription factor activity, RNA polymerase II-specific
Molecular FunctionRNA polymerase II cis-regulatory region sequence-specific DNA binding
Biological Processcranial skeletal system development
Biological Processdevelopmental pigmentation
Biological Processenteric nervous system development
Biological Processglial cell differentiation
Biological Processinner ear development
Biological Processiridophore differentiation
Biological Processmelanocyte differentiation
Biological Processmorphogenesis of an epithelium
Biological Processmyelination in peripheral nervous system
Biological Processnegative regulation of neurogenesis
Biological Processnegative regulation of transcription by RNA polymerase II
Biological Processneural crest cell development
Biological Processneural crest cell migration
Biological Processolfactory bulb development
Biological Processoligodendrocyte differentiation
Biological Processotic vesicle morphogenesis
Biological Processotolith development
Biological Processperipheral nervous system development
Biological Processpigment cell differentiation
Biological Processpigmentation
Biological Processpositive regulation of gene expression
Biological ProcessSchwann cell development
Biological ProcessSchwann cell differentiation
Biological Processsemicircular canal morphogenesis
Biological Processxanthophore differentiation

Keywords

Enzyme and pathway databases

Names & Taxonomy

Protein names

  • Recommended name
    Transcription factor SOX-10

Gene names

    • Name
      sox10
    • Synonyms
      cls/sox10
      , zgc:100757

Organism names

  • Taxonomic identifier
  • Strain
    • Tuebingen
  • Taxonomic lineage
    Eukaryota > Metazoa > Chordata > Craniata > Vertebrata > Euteleostomi > Actinopterygii > Neopterygii > Teleostei > Ostariophysi > Cypriniformes > Danionidae > Danioninae > Danio

Accessions

  • Primary accession
    Q90XD1
  • Secondary accessions
    • B3DKJ2
    • F6P4Y0

Proteomes

Organism-specific databases

Subcellular Location

Keywords

  • Cellular component

PTM/Processing

Proteomic databases

Expression

Gene expression databases

Interaction

Protein-protein interaction databases

Family & Domains

Features

Showing features for region, domain, compositional bias.

TypeIDPosition(s)Description
Region1-69Disordered
Domain108-176HMG box
Compositional bias160-189Basic and acidic residues
Region160-289Disordered
Compositional bias273-287Polar residues
Region362-392Disordered
Region458-485Disordered
Compositional bias463-485Polar residues

Phylogenomic databases

Family and domain databases

Sequence

  • Sequence status
    Complete
  • Length
    485
  • Mass (Da)
    51,428
  • Last updated
    2001-12-01 v1
  • Checksum
    038577F9BAC0CD53
MSAEEHSMSEVEMSPGVSDDGHSMSPGHSSGAPGGADSPLPGQQSQMSGIGDDGAGVSGGVSVKSDEEDDRFPIGIREAVSQVLNGYDWTLVPMPVRVNSGSKSKPHVKRPMNAFMVWAQAARRKLADQYPHLHNAELSKTLGKLWRLLNETDKRPFIEEAERLRKQHKKDYPEYKYQPRRRKNGKPGSSSEADAHSEGEVSHSQSHYKSLHLEVAHGGAAGSPLGDGHHPHATGQSHSPPTPPTTPKTELQGGKSGEGKREGGASRSGLGVGADGSSASSSASGKPHIDFGNVDIGEISHDVMANMEPFDVNEFDQYLPPNGHPQASATASAGSAAPSYTYGISSALAAASGHSTAWLSKQQLPSQQHLGADGGKTQIKSETHFPGDTAASGSHVTYTPLTLPHYSSAFPSLASRAQFAEYAEHQASGSYYAHSSQTSGLYSAFSYMGPSQRPLYTAIPDPGSVPQSHSPTHWEQPVYTTLSRP

Features

Showing features for compositional bias.

TypeIDPosition(s)Description
Compositional bias160-189Basic and acidic residues
Compositional bias273-287Polar residues
Compositional bias463-485Polar residues

Keywords

Sequence databases

Nucleotide SequenceProtein SequenceMolecule TypeStatus
CU695115
EMBL· GenBank· DDBJ
-Genomic DNA No translation available.
BC163868
EMBL· GenBank· DDBJ
AAI63868.1
EMBL· GenBank· DDBJ
mRNA
BC163883
EMBL· GenBank· DDBJ
AAI63883.1
EMBL· GenBank· DDBJ
mRNA
AF402677
EMBL· GenBank· DDBJ
AAK84872.1
EMBL· GenBank· DDBJ
mRNA

Genome annotation databases

Similar Proteins

Disclaimer

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