Q8LF65 · ATL17_ARATH
- ProteinRING-H2 finger protein ATL17
- GeneATL17
- StatusUniProtKB reviewed (Swiss-Prot)
- Amino acids235 (go to sequence)
- Protein existenceEvidence at transcript level
- Annotation score4/5
Function
function
May be involved in the early steps of the plant defense signaling pathway.
Catalytic activity
Pathway
Protein modification; protein ubiquitination.
GO annotations
all annotations | all molecular function | nucleotide binding | molecular_function | nucleic acid binding | dna binding | chromatin binding | dna-binding transcription factor activity | rna binding | cytoskeletal motor activity | catalytic activity | nuclease activity | signaling receptor binding | structural molecule activity | transporter activity | binding | protein binding | translation factor activity, rna binding | lipid binding | kinase activity | transferase activity | hydrolase activity | oxygen binding | enzyme regulator activity | carbohydrate binding | signaling receptor activity | translation regulator activity | transcription regulator activity | other molecular function | all biological process | carbohydrate metabolic process | generation of precursor metabolites and energy | nucleobase-containing compound metabolic process | dna metabolic process | translation | lipid metabolic process | transport | response to stress | cell cycle | cell communication | signal transduction | cell-cell signaling | multicellular organism development | circadian rhythm | biological_process | metabolic process | catabolic process | biosynthetic process | response to light stimulus | response to external stimulus | tropism | response to biotic stimulus | response to abiotic stimulus | response to endogenous stimulus | embryo development | post-embryonic development | fruit ripening | abscission | pollination | flower development | cellular process | programmed cell death | photosynthesis | cellular component organization | cell growth | protein metabolic process | cellular homeostasis | secondary metabolic process | reproductive process | cell differentiation | protein modification process | growth | epigenetic regulation of gene expression | response to chemical | anatomical structure development | regulation of molecular function | other biological process | all cellular component | cellular_component | extracellular region | cell wall | intracellular anatomical structure | nucleus | nuclear envelope | nucleoplasm | nucleolus | cytoplasm | mitochondrion | lysosome | endosome | vacuole | peroxisome | endoplasmic reticulum | golgi apparatus | cytosol | ribosome | cytoskeleton | plasma membrane | chloroplast | plastid | thylakoid | membrane | external encapsulating structure | other cellular component | |||
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Aspect | Term | |
---|---|---|
Cellular Component | membrane | |
Molecular Function | metal ion binding | |
Molecular Function | transferase activity | |
Biological Process | defense response | |
Biological Process | protein ubiquitination |
Keywords
- Molecular function
- Biological process
- Ligand
Enzyme and pathway databases
Names & Taxonomy
Protein names
- Recommended nameRING-H2 finger protein ATL17
- EC number
- Alternative names
Gene names
Organism names
- Strain
- Taxonomic lineageEukaryota > Viridiplantae > Streptophyta > Embryophyta > Tracheophyta > Spermatophyta > Magnoliopsida > eudicotyledons > Gunneridae > Pentapetalae > rosids > malvids > Brassicales > Brassicaceae > Camelineae > Arabidopsis
Accessions
- Primary accessionQ8LF65
- Secondary accessions
Proteomes
Organism-specific databases
Subcellular Location
UniProt Annotation
GO Annotation
Membrane ; Single-pass membrane protein
Features
Showing features for transmembrane.
Type | ID | Position(s) | Description | |||
---|---|---|---|---|---|---|
Transmembrane | 1-21 | Helical | ||||
Sequence: MLTTTILILLIVILMVSLHLY |
Keywords
- Cellular component
PTM/Processing
Features
Showing features for chain.
Type | ID | Position(s) | Description | |||
---|---|---|---|---|---|---|
Chain | PRO_0000055801 | 1-235 | RING-H2 finger protein ATL17 | |||
Sequence: MLTTTILILLIVILMVSLHLYYRWYLLRSSPFNRTTAASTFFTDPSSTPGGLNPSIIKSLPIFTFSAVTALFAMECSVCLSEFKDNESGRVMPNCKHTFHVHCIDMWFHSHSSCPLCRSQIEPFAGGVKSSMDEVAISISDPVYGDTNHHEGTETTGDSVPEDSQRKPAAIEISQRNLGEIENDLSRSHSFRSPTDEPDDIFHSEFESRSGEVLLLLLLLSEFLIFCFRRSVACK |
Proteomic databases
Expression
Interaction
Protein-protein interaction databases
Structure
Family & Domains
Features
Showing features for zinc finger, region, compositional bias.
Type | ID | Position(s) | Description | |||
---|---|---|---|---|---|---|
Zinc finger | 76-118 | RING-type; atypical | ||||
Sequence: CSVCLSEFKDNESGRVMPNCKHTFHVHCIDMWFHSHSSCPLCR | ||||||
Region | 143-167 | Disordered | ||||
Sequence: VYGDTNHHEGTETTGDSVPEDSQRK | ||||||
Compositional bias | 147-161 | Basic and acidic residues | ||||
Sequence: TNHHEGTETTGDSVP |
Domain
The RING-type zinc finger domain mediates binding to an E2 ubiquitin-conjugating enzyme.
Sequence similarities
Belongs to the RING-type zinc finger family. ATL subfamily.
Keywords
- Domain
Phylogenomic databases
Family and domain databases
Sequence
- Sequence statusComplete
- Length235
- Mass (Da)26,319
- Last updated2005-07-05 v2
- ChecksumC0597FA6ECF48E88
Sequence caution
Features
Showing features for sequence conflict, compositional bias.
Type | ID | Position(s) | Description | |||
---|---|---|---|---|---|---|
Sequence conflict | 71-72 | in Ref. 4; AAM61585 | ||||
Sequence: LF → QN | ||||||
Sequence conflict | 75 | in Ref. 4; AAM61585 | ||||
Sequence: E → K | ||||||
Sequence conflict | 102 | in Ref. 3; AEE83676 and 4; AAM61585 | ||||
Sequence: H → D | ||||||
Sequence conflict | 120 | in Ref. 3; AEE83676 and 4; AAM61585 | ||||
Sequence: Q → L | ||||||
Sequence conflict | 131 | in Ref. 3; AEE83676 and 4; AAM61585 | ||||
Sequence: S → T | ||||||
Compositional bias | 147-161 | Basic and acidic residues | ||||
Sequence: TNHHEGTETTGDSVP | ||||||
Sequence conflict | 224 | in Ref. 3; AEE83676 and 4; AAM61585 | ||||
Sequence: L → R |
Keywords
- Technical term
Sequence databases
Nucleotide Sequence | Protein Sequence | Molecule Type | Status | |
---|---|---|---|---|
Z97340 EMBL· GenBank· DDBJ | CAB10376.1 EMBL· GenBank· DDBJ | Genomic DNA | Sequence problems. | |
AL161542 EMBL· GenBank· DDBJ | CAB78639.1 EMBL· GenBank· DDBJ | Genomic DNA | Sequence problems. | |
CP002687 EMBL· GenBank· DDBJ | AEE83676.1 EMBL· GenBank· DDBJ | Genomic DNA | ||
AY085027 EMBL· GenBank· DDBJ | AAM61585.1 EMBL· GenBank· DDBJ | mRNA |