Q8GWZ6 · SRR1_ARATH

Function

function

Probable regulator involved in a circadian clock input pathway, which is required for normal oscillator function. Regulates the expression of clock-regulated genes such as CCA1 and TOC1. Involved in both the phytochrome B (PHYB) and PHYB-independent signaling pathways.

GO annotations

all annotationsall molecular functionnucleotide bindingmolecular_functionnucleic acid bindingdna bindingchromatin bindingdna-binding transcription factor activityrna bindingcytoskeletal motor activitycatalytic activitynuclease activitysignaling receptor bindingstructural molecule activitytransporter activitybindingprotein bindingtranslation factor activity, rna bindinglipid bindingkinase activitytransferase activityhydrolase activityoxygen bindingenzyme regulator activitycarbohydrate bindingsignaling receptor activitytranslation regulator activitytranscription regulator activityother molecular functionall biological processcarbohydrate metabolic processgeneration of precursor metabolites and energynucleobase-containing compound metabolic processdna metabolic processtranslationlipid metabolic processtransportresponse to stresscell cyclecell communicationsignal transductioncell-cell signalingmulticellular organism developmentcircadian rhythmbiological_processmetabolic processcatabolic processbiosynthetic processresponse to light stimulusresponse to external stimulustropismresponse to biotic stimulusresponse to abiotic stimulusresponse to endogenous stimulusembryo developmentpost-embryonic developmentfruit ripeningabscissionpollinationflower developmentcellular processprogrammed cell deathphotosynthesiscellular component organizationcell growthprotein metabolic processcellular homeostasissecondary metabolic processreproductive processcell differentiationprotein modification processgrowthepigenetic regulation of gene expressionresponse to chemicalanatomical structure developmentregulation of molecular functionother biological processall cellular componentcellular_componentextracellular regioncell wallintracellular anatomical structurenucleusnuclear envelopenucleoplasmnucleoluscytoplasmmitochondrionlysosomeendosomevacuoleperoxisomeendoplasmic reticulumgolgi apparatuscytosolribosomecytoskeletonplasma membranechloroplastplastidthylakoidmembraneexternal encapsulating structureother cellular component
Cell color indicative of number of GO terms
AspectTerm
Cellular Componentcytoplasm
Cellular Componentnucleus
Biological Processcircadian rhythm
Biological Processred or far-red light signaling pathway
Biological Processred, far-red light phototransduction
Biological Processregulation of circadian rhythm

Keywords

Names & Taxonomy

Protein names

  • Recommended name
    Protein SENSITIVITY TO RED LIGHT REDUCED 1

Gene names

    • Name
      SRR1
    • ORF names
      F2O15.220, F2O15.23
    • Ordered locus names
      At5g59560

Organism names

  • Taxonomic identifier
  • Strain
    • cv. Columbia
  • Taxonomic lineage
    Eukaryota > Viridiplantae > Streptophyta > Embryophyta > Tracheophyta > Spermatophyta > Magnoliopsida > eudicotyledons > Gunneridae > Pentapetalae > rosids > malvids > Brassicales > Brassicaceae > Camelineae > Arabidopsis

Accessions

  • Primary accession
    Q8GWZ6
  • Secondary accessions
    • Q9LTH5

Proteomes

Organism-specific databases

Genome annotation databases

Subcellular Location

Keywords

PTM/Processing

Features

Showing features for chain.

TypeIDPosition(s)Description
ChainPRO_00001861221-275Protein SENSITIVITY TO RED LIGHT REDUCED 1

Proteomic databases

PTM databases

Expression

Induction

By light. Not modulated by far-red light.

Gene expression databases

Interaction

Protein-protein interaction databases

Family & Domains

Features

Showing features for region, motif, compositional bias.

TypeIDPosition(s)Description
Region1-49Disordered
Motif26-29Nuclear localization signal
Compositional bias31-49Basic and acidic residues

Sequence similarities

Belongs to the SRR1 family.

Phylogenomic databases

Family and domain databases

Sequence

  • Sequence status
    Complete
  • Length
    275
  • Mass (Da)
    31,475
  • Last updated
    2003-05-30 v2
  • Checksum
    4FBE65C784CFFB4E
METTVKNSSSDGEWKVVLPSKGRQGRRRKPKPKGQAEEEEQPWKSDDLEIDPQRQARLKQKMEISLKKIESSSFYTAFLEQLKSPEVSNQIRLVLGSETQLQMVMYGIGSIESYESPRFQLSIAILMKREFDWVGDNIEVFDPVLSATESSYLESLGCSVLSVNEQARREALKPTLFFMPHCEANLYSNLLQANWRMDRLSKIALFGNSFQMYEEQVSFDAEVICATKRIIAAQRVTSEFAIETESDDYFAAFHDSSWHFFSSGIDSELPLFVSD

Sequence caution

The sequence BAC43135.1 differs from that shown. Reason: Erroneous initiation

Features

Showing features for compositional bias, sequence conflict.

TypeIDPosition(s)Description
Compositional bias31-49Basic and acidic residues
Sequence conflict207in Ref. 5
Sequence conflict209-210in Ref. 5

Keywords

Sequence databases

Nucleotide SequenceProtein SequenceMolecule TypeStatus
AY127047
EMBL· GenBank· DDBJ
AAM97478.1
EMBL· GenBank· DDBJ
mRNA
AB025604
EMBL· GenBank· DDBJ
BAA97490.1
EMBL· GenBank· DDBJ
Genomic DNA
CP002688
EMBL· GenBank· DDBJ
AED97205.1
EMBL· GenBank· DDBJ
Genomic DNA
CP002688
EMBL· GenBank· DDBJ
AED97206.1
EMBL· GenBank· DDBJ
Genomic DNA
AY084714
EMBL· GenBank· DDBJ
AAM61288.1
EMBL· GenBank· DDBJ
mRNA
AK118532
EMBL· GenBank· DDBJ
BAC43135.1
EMBL· GenBank· DDBJ
mRNA Different initiation

Genome annotation databases

Similar Proteins

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