Q7XWP1 · CPSF1_ORYSJ

Function

function

CPSF plays a key role in pre-mRNA 3'-end formation, recognizing the AAUAAA signal sequence and interacting with poly(A)polymerase and other factors to bring about cleavage and poly(A) addition. This subunit is involved in the RNA recognition step of the polyadenylation reaction (By similarity).

GO annotations

all annotationsall molecular functionnucleotide bindingmolecular_functionnucleic acid bindingdna bindingchromatin bindingdna-binding transcription factor activityrna bindingcytoskeletal motor activitycatalytic activitynuclease activitysignaling receptor bindingstructural molecule activitytransporter activitybindingprotein bindingtranslation factor activity, rna bindinglipid bindingkinase activitytransferase activityhydrolase activityoxygen bindingenzyme regulator activitycarbohydrate bindingsignaling receptor activitytranslation regulator activitytranscription regulator activityother molecular functionall biological processcarbohydrate metabolic processgeneration of precursor metabolites and energynucleobase-containing compound metabolic processdna metabolic processtranslationlipid metabolic processtransportresponse to stresscell cyclecell communicationsignal transductioncell-cell signalingmulticellular organism developmentcircadian rhythmbiological_processmetabolic processcatabolic processbiosynthetic processresponse to light stimulusresponse to external stimulustropismresponse to biotic stimulusresponse to abiotic stimulusresponse to endogenous stimulusembryo developmentpost-embryonic developmentfruit ripeningabscissionpollinationflower developmentcellular processprogrammed cell deathphotosynthesiscellular component organizationcell growthprotein metabolic processcellular homeostasissecondary metabolic processreproductive processcell differentiationprotein modification processgrowthepigenetic regulation of gene expressionresponse to chemicalanatomical structure developmentregulation of molecular functionother biological processall cellular componentcellular_componentextracellular regioncell wallintracellular anatomical structurenucleusnuclear envelopenucleoplasmnucleoluscytoplasmmitochondrionlysosomeendosomevacuoleperoxisomeendoplasmic reticulumgolgi apparatuscytosolribosomecytoskeletonplasma membranechloroplastplastidthylakoidmembraneexternal encapsulating structureother cellular component
Cell color indicative of number of GO terms
AspectTerm
Cellular Componentnucleus
Molecular FunctionRNA binding
Biological ProcessmRNA processing

Keywords

Names & Taxonomy

Protein names

  • Recommended name
    Probable cleavage and polyadenylation specificity factor subunit 1
  • Alternative names
    • Cleavage and polyadenylation specificity factor 160 kDa subunit (CPSF 160 kDa subunit)

Gene names

    • ORF names
      OSJNBa0032B23.5
    • Ordered locus names
      Os04g0252200, LOC_Os04g18010

Organism names

  • Taxonomic identifier
  • Strain
    • cv. Nipponbare
  • Taxonomic lineage
    Eukaryota > Viridiplantae > Streptophyta > Embryophyta > Tracheophyta > Spermatophyta > Magnoliopsida > Liliopsida > Poales > Poaceae > BOP clade > Oryzoideae > Oryzeae > Oryzinae > Oryza > Oryza sativa

Accessions

  • Primary accession
    Q7XWP1

Proteomes

Subcellular Location

Keywords

PTM/Processing

Features

Showing features for chain, modified residue (large scale data).

TypeIDPosition(s)SourceDescription
ChainPRO_00002474661-1441UniProtProbable cleavage and polyadenylation specificity factor subunit 1
Modified residue (large scale data)469PTMeXchangePhosphoserine
Modified residue (large scale data)477PTMeXchangePhosphoserine
Modified residue (large scale data)891PTMeXchangePhosphoserine
Modified residue (large scale data)895PTMeXchangePhosphoserine

Proteomic databases

Interaction

Subunit

CPSF is a heterotetramer composed of four distinct subunits 160, 100, 70 and 30 kDa.

Protein-protein interaction databases

Structure

Family & Domains

Sequence similarities

Belongs to the CPSF1 family.

Phylogenomic databases

Family and domain databases

Sequence

  • Sequence status
    Complete
  • Length
    1,441
  • Mass (Da)
    158,262
  • Last updated
    2004-03-01 v2
  • Checksum
    F9359CF34AB317DF
MSYAAYKMMHWPTGVDHCAAGFVTHSPSDAAAFFTAATVGPGPEGDIDSAAAASRPRRLGPSPNLVVAAANVLEVYAVRAETAAEDGGGGTQPSSSSGAVLDGISGARLELVCYYRLHGNIESMTVLSDGAENRRATIALAFKDAKITCLEFDDAIHGLRTSSMHCFEGPEWQHLKRGRESFAWGPVIKADPLGRCGAALAYGLQMIILKAAQVGHSLVGEDEPTCALSSTAVCIESSYLIDLRALDMNHVKDFAFVHGYIEPVLVILHEQEPTWAGRILSKHHTCMISAFSISMTLKQHPVIWSAANLPHDAYQLLAVPPPISGVLVICANSIHYHSQSTSCSLDLNNFSSHPDGSPEISKSNFQVELDAAKATWLSNDIVMFSTKAGEMLLLTVVYDGRVVQRLDLMKSKASVLSSAVTSIGNSFFFLGSRLGDSLLVQFSYCASKSVLQDLTNERSADIEGDLPFSKRLKRIPSDVLQDVTSVEELSFQNIIAPNSLESAQKISYIVRDALINVGPLKDFSYGLRANADPNAMGNAKQSNYELVCCSGHGKNGSLSVLQQSIRPDLITEVELPSCRGIWTVYYKSYRGQMAEDNEYHAYLIISLENRTMVLETGDDLGEVTETVDYFVQASTIAAGNLFGRRRVIQVYGKGARVLDGSFMTQELNFTTHASESSSSEALGVACASIADPYVLLKMVDGSVQLLIGDYCTCTLSVNAPSIFISSSERIAACTLYRDRGPEPWLTKTRSDAWLSTGIAEAIDGNGTSSHDQSDIYCIICYESGKLEIFEVPSFRCVFSVENFISGEALLVDKFSQLIYEDSTKERYDCTKASLKKEAGDSIRIVELAMHRWSGQFSRPFLFGLLNDGTLLCYHAFSYEASESNVKRVPLSPQGSADHHNASDSRLRNLRFHRVSIDITSREDIPTLGRPRITTFNNVGGYEGLFLSGTRPAWVMVCRQRLRVHPQLCDGPIEAFTVLHNVNCSHGFIYVTSQGFLKICQLPSAYNYDSYWPVQKVPLHGTPHQVTYYAEQSLYPLIVSVPVVRPLNQVLSSMADQESVHHMDNDVTSTDALHKTYTVDEFEVRILELEKPGGHWETKSTIPMQLFENALTVRIVTLHNTTTKENETLLAIGTAYVLGEDVAARGRVLLFSFTKSENSQNLVTEVYSKESKGAVSAVASLQGHLLIASGPKITLNKWTGAELTAVAFYDAPLHVVSLNIVKNFVLFGDIHKSIYFLSWKEQGSQLSLLAKDFGSLDCFATEFLIDGSTLSLVASDSDKNVQIFYYAPKMVESWKGQKLLSRAEFHVGAHITKFLRLQMLPTQGLSSEKTNRFALLFGNLDGGIGCIAPIDELTFRRLQSLQRKLVDAVPHVCGLNPRSFRQFHSNGKGHRPGPDNIIDFELLCSYEMLSLDEQLDVAQQIGTTRSQILSNFSDISLGTSFL

Computationally mapped potential isoform sequences

There are 2 potential isoforms mapped to this entry

View all
EntryEntry nameGene nameLength
A0A0P0W8G0A0A0P0W8G0_ORYSJOs04g0252200241
A0A0P0W7T5A0A0P0W7T5_ORYSJOs04g0252200124

Keywords

Sequence databases

Nucleotide SequenceProtein SequenceMolecule TypeStatus
AL606991
EMBL· GenBank· DDBJ
CAD39979.2
EMBL· GenBank· DDBJ
Genomic DNA
AP014960
EMBL· GenBank· DDBJ
-Genomic DNA No translation available.

Similar Proteins

Disclaimer

Any medical or genetic information present in this entry is provided for research, educational and informational purposes only. It is not in any way intended to be used as a substitute for professional medical advice, diagnosis, treatment or care. Our staff consists of biologists and biochemists that are not trained to give medical advice.
We'd like to inform you that we have updated our Privacy Notice to comply with Europe’s new General Data Protection Regulation (GDPR) that applies since 25 May 2018.
FeedbackHelp