Q7XKK6 · ARFJ_ORYSJ

Function

function

Auxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs).

Features

Showing features for dna binding.

169950100150200250300350400450500550600650
TypeIDPosition(s)Description
DNA binding125-227TF-B3

GO annotations

all annotationsall molecular functionnucleotide bindingmolecular_functionnucleic acid bindingdna bindingchromatin bindingdna-binding transcription factor activityrna bindingcytoskeletal motor activitycatalytic activitynuclease activitysignaling receptor bindingstructural molecule activitytransporter activitybindingprotein bindingtranslation factor activity, rna bindinglipid bindingkinase activitytransferase activityhydrolase activityoxygen bindingenzyme regulator activitycarbohydrate bindingsignaling receptor activitytranslation regulator activitytranscription regulator activityother molecular functionall biological processcarbohydrate metabolic processgeneration of precursor metabolites and energynucleobase-containing compound metabolic processdna metabolic processtranslationlipid metabolic processtransportresponse to stresscell cyclecell communicationsignal transductioncell-cell signalingmulticellular organism developmentcircadian rhythmbiological_processmetabolic processcatabolic processbiosynthetic processresponse to light stimulusresponse to external stimulustropismresponse to biotic stimulusresponse to abiotic stimulusresponse to endogenous stimulusembryo developmentpost-embryonic developmentfruit ripeningabscissionpollinationflower developmentcellular processprogrammed cell deathphotosynthesiscellular component organizationcell growthprotein metabolic processcellular homeostasissecondary metabolic processreproductive processcell differentiationprotein modification processgrowthepigenetic regulation of gene expressionresponse to chemicalanatomical structure developmentregulation of molecular functionother biological processall cellular componentcellular_componentextracellular regioncell wallintracellular anatomical structurenucleusnuclear envelopenucleoplasmnucleoluscytoplasmmitochondrionlysosomeendosomevacuoleperoxisomeendoplasmic reticulumgolgi apparatuscytosolribosomecytoskeletonplasma membranechloroplastplastidthylakoidmembraneexternal encapsulating structureother cellular component
Cell color indicative of number of GO terms
AspectTerm
Cellular Componentnucleus
Molecular FunctionDNA binding
Biological Processauxin-activated signaling pathway
Biological Processregulation of DNA-templated transcription

Keywords

Names & Taxonomy

Protein names

  • Recommended name
    Auxin response factor 10

Gene names

    • Name
      ARF10
    • ORF names
      OsJ_014843, OSJNBa0019D11.3, OSJNBb0061C13.15
    • Ordered locus names
      Os04g0519700, LOC_Os04g43910

Organism names

  • Taxonomic identifier
  • Strain
    • cv. Nipponbare
  • Taxonomic lineage
    Eukaryota > Viridiplantae > Streptophyta > Embryophyta > Tracheophyta > Spermatophyta > Magnoliopsida > Liliopsida > Poales > Poaceae > BOP clade > Oryzoideae > Oryzeae > Oryzinae > Oryza > Oryza sativa

Accessions

  • Primary accession
    Q7XKK6
  • Secondary accessions
    • A3AVM1
    • Q0JBP3
    • Q7XUA0

Proteomes

Subcellular Location

Keywords

PTM/Processing

Features

Showing features for chain, modified residue (large scale data).

TypeIDPosition(s)SourceDescription
ChainPRO_00002992651-699UniProtAuxin response factor 10
Modified residue (large scale data)584PTMeXchangePhosphoserine

Proteomic databases

Expression

Tissue specificity

Expressed in roots, culms, leaves and young panicles.

Interaction

Subunit

Homodimers and heterodimers.

Protein-protein interaction databases

Structure

Family & Domains

Features

Showing features for region, compositional bias, domain.

TypeIDPosition(s)Description
Region108-136Disordered
Compositional bias122-136Polar residues
Region505-533Disordered
Region551-595Disordered
Compositional bias566-595Polar residues
Domain613-693PB1

Domain

Interactions between auxin response factors (ARFs) and Aux/IAA proteins occur through their C-terminal dimerization domains III and IV.

Sequence similarities

Belongs to the ARF family.

Phylogenomic databases

Family and domain databases

Sequence

  • Sequence status
    Complete
  • Length
    699
  • Mass (Da)
    75,737
  • Last updated
    2007-09-11 v3
  • Checksum
    937A7D491A14D9A5
MLTFMELAGPTEGDGGGSVDSQLWAACAGSMSSVPPVGAAVYYFPQGHAEQASAAVDLSSARVPPLVPCRVVAVRFMADAESDEVFAKIRLVPLRPGDAVVDVGEAAAAEARREEENSRPRPTSFAKTLTQSDANNGGGFSVPRFCAETIFPELDYSSEPPVQSVCAKDVHGVEWTFRHIYRGTPRRHLLTTGWSPFVNKKQLTAGDSIVFMRDEGGNIHVGLRRAKRGFCSIGGDDESLSSIPGWDQYRGLMRRNATATATGGRTPPKGKVPPENVLTAATRATTGQPFEVLYYPRASTPEFCVRAAAVRTAMAVQWCPGMRFKMAFETEDSSRISWFMGTVAGVQASDPVRWPQSPWRLLQVTWDEPELLQNVKRVCPWLVELVSSMPNLHLPSFSPPRKKPRNPPYAELPLEGQIFTGPVFPPNPMAHDHHHHHGFPFLPFPDSSAQPAGIQGARHAQFASPFPEFHIGNLQPNLMLYAGIRLPPADRAAPAPRPPRIIISTDLTIGSPGKPDDAACSPSSGGKKIDDTKPRGFLLFGQAILTEEQIKNGNSDGRPASPNWDAEKAPNTSEGSDSGVTQGSPTKNTTPSWSLPYFGGNNISRASEYELNPGQCKVFVESETVGRSLDLSALSSFEELYACLSDMFSIGSDELRSHLVYRSPAGEVKHAGDEPFCAFVKSARKLRILTDAGSDNLGD

Computationally mapped potential isoform sequences

There is 1 potential isoform mapped to this entry

View all
EntryEntry nameGene nameLength
A0A0N7KJD5A0A0N7KJD5_ORYSJOs04g0519700392

Sequence caution

The sequence BAF15244.1 differs from that shown. Reason: Erroneous gene model prediction
The sequence CAD41455.1 differs from that shown. Reason: Erroneous initiation
The sequence CAE05633.2 differs from that shown. Reason: Erroneous initiation
The sequence CM000141 differs from that shown. Reason: Frameshift

Features

Showing features for compositional bias.

TypeIDPosition(s)Description
Compositional bias122-136Polar residues
Compositional bias566-595Polar residues

Keywords

Sequence databases

Nucleotide SequenceProtein SequenceMolecule TypeStatus
AL662958
EMBL· GenBank· DDBJ
CAD41455.1
EMBL· GenBank· DDBJ
Genomic DNA Different initiation
AL731629
EMBL· GenBank· DDBJ
CAE05633.2
EMBL· GenBank· DDBJ
Genomic DNA Different initiation
AP008210
EMBL· GenBank· DDBJ
BAF15244.1
EMBL· GenBank· DDBJ
Genomic DNA Sequence problems.
AP014960
EMBL· GenBank· DDBJ
-Genomic DNA No translation available.
CM000141
EMBL· GenBank· DDBJ
-Genomic DNA No translation available.

Genome annotation databases

Similar Proteins

Disclaimer

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