Q700E3 · BH027_ARATH
- ProteinTranscription factor bHLH27
- GeneBHLH27
- StatusUniProtKB reviewed (Swiss-Prot)
- Amino acids263 (go to sequence)
- Protein existenceEvidence at transcript level
- Annotation score3/5
Function
GO annotations
all annotations | all molecular function | nucleotide binding | molecular_function | nucleic acid binding | dna binding | chromatin binding | dna-binding transcription factor activity | rna binding | cytoskeletal motor activity | catalytic activity | nuclease activity | signaling receptor binding | structural molecule activity | transporter activity | binding | protein binding | translation factor activity, rna binding | lipid binding | kinase activity | transferase activity | hydrolase activity | oxygen binding | enzyme regulator activity | carbohydrate binding | signaling receptor activity | translation regulator activity | transcription regulator activity | other molecular function | all biological process | carbohydrate metabolic process | generation of precursor metabolites and energy | nucleobase-containing compound metabolic process | dna metabolic process | translation | lipid metabolic process | transport | response to stress | cell cycle | cell communication | signal transduction | cell-cell signaling | multicellular organism development | circadian rhythm | biological_process | metabolic process | catabolic process | biosynthetic process | response to light stimulus | response to external stimulus | tropism | response to biotic stimulus | response to abiotic stimulus | response to endogenous stimulus | embryo development | post-embryonic development | fruit ripening | abscission | pollination | flower development | cellular process | programmed cell death | photosynthesis | cellular component organization | cell growth | protein metabolic process | cellular homeostasis | secondary metabolic process | reproductive process | cell differentiation | protein modification process | growth | epigenetic regulation of gene expression | response to chemical | anatomical structure development | regulation of molecular function | other biological process | all cellular component | cellular_component | extracellular region | cell wall | intracellular anatomical structure | nucleus | nuclear envelope | nucleoplasm | nucleolus | cytoplasm | mitochondrion | lysosome | endosome | vacuole | peroxisome | endoplasmic reticulum | golgi apparatus | cytosol | ribosome | cytoskeleton | plasma membrane | chloroplast | plastid | thylakoid | membrane | external encapsulating structure | other cellular component | |||
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Aspect | Term | |
---|---|---|
Cellular Component | nucleus | |
Molecular Function | DNA binding | |
Molecular Function | DNA-binding transcription factor activity | |
Molecular Function | protein dimerization activity | |
Biological Process | regulation of DNA-templated transcription |
Keywords
- Molecular function
- Biological process
Names & Taxonomy
Protein names
- Recommended nameTranscription factor bHLH27
- Alternative names
Gene names
Organism names
- Strain
- Taxonomic lineageEukaryota > Viridiplantae > Streptophyta > Embryophyta > Tracheophyta > Spermatophyta > Magnoliopsida > eudicotyledons > Gunneridae > Pentapetalae > rosids > malvids > Brassicales > Brassicaceae > Camelineae > Arabidopsis
Accessions
- Primary accessionQ700E3
- Secondary accessions
Proteomes
Organism-specific databases
Genome annotation databases
Subcellular Location
PTM/Processing
Features
Showing features for chain.
Type | ID | Position(s) | Description | |||
---|---|---|---|---|---|---|
Chain | PRO_0000358737 | 1-263 | Transcription factor bHLH27 | |||
Sequence: MEDLDHEYKNYWETTMFFQNQELEFDSWPMEEAFSGSGESSSPDGAATSPASSKNVVSERNRRQKLNQRLFALRSVVPNISKLDKASVIKDSIDYMQELIDQEKTLEAEIRELESRSTLLENPVRDYDCNFAETHLQDFSDNNDMRSKKFKQMDYSTRVQHYPIEVLEMKVTWMGEKTVVVCITCSKKRETMVQLCKVLESLNLNILTTNFSSFTSRLSTTLFLQVTLSLSPSLISLFGNVITSTNYKILNASREYCTCLVLV |
Proteomic databases
Expression
Tissue specificity
Expressed constitutively in roots, leaves, stems, and flowers.
Gene expression databases
Structure
Family & Domains
Features
Showing features for region, compositional bias, domain.
Type | ID | Position(s) | Description | |||
---|---|---|---|---|---|---|
Region | 32-61 | Disordered | ||||
Sequence: EAFSGSGESSSPDGAATSPASSKNVVSERN | ||||||
Compositional bias | 34-57 | Polar residues | ||||
Sequence: FSGSGESSSPDGAATSPASSKNVV | ||||||
Domain | 50-99 | bHLH | ||||
Sequence: PASSKNVVSERNRRQKLNQRLFALRSVVPNISKLDKASVIKDSIDYMQEL |
Phylogenomic databases
Family and domain databases
Sequence & Isoforms
- Sequence statusComplete
This entry describes 4 isoforms produced by Alternative splicing.
Q700E3-1
This isoform has been chosen as the canonical sequence. All positional information in this entry refers to it. This is also the sequence that appears in the downloadable versions of the entry.
- Name1
- Length263
- Mass (Da)30,280
- Last updated2004-07-05 v1
- ChecksumC0D7FA630D6F771D
Q700E3-2
- Name2
- Differences from canonical
- 226-263: VTLSLSPSLISLFGNVITSTNYKILNASREYCTCLVLV → ADEEESSAVEAKIQMAIAAYNDPNCLINF
Q700E3-3
- Name3
Q700E3-4
- Name4
- Differences from canonical
- 169-263: MKVTWMGEKTVVVCITCSKKRETMVQLCKVLESLNLNILTTNFSSFTSRLSTTLFLQVTLSLSPSLISLFGNVITSTNYKILNASREYCTCLVLV → VRTMHYLAVHSKLPFF
Computationally mapped potential isoform sequences
There are 2 potential isoforms mapped to this entry
Entry | Entry name | Gene name | Length | ||
---|---|---|---|---|---|
A0A1P8B6L1 | A0A1P8B6L1_ARATH | At4g29930 | 228 | ||
A0A1P8B6K8 | A0A1P8B6K8_ARATH | At4g29930 | 234 |
Features
Showing features for compositional bias, alternative sequence, sequence conflict.
Type | ID | Position(s) | Description | |||
---|---|---|---|---|---|---|
Compositional bias | 34-57 | Polar residues | ||||
Sequence: FSGSGESSSPDGAATSPASSKNVV | ||||||
Alternative sequence | VSP_036081 | 124-152 | in isoform 3 | |||
Sequence: Missing | ||||||
Sequence conflict | 139 | in Ref. 7; AF488569 | ||||
Sequence: F → I | ||||||
Alternative sequence | VSP_036082 | 169-263 | in isoform 4 | |||
Sequence: MKVTWMGEKTVVVCITCSKKRETMVQLCKVLESLNLNILTTNFSSFTSRLSTTLFLQVTLSLSPSLISLFGNVITSTNYKILNASREYCTCLVLV → VRTMHYLAVHSKLPFF | ||||||
Alternative sequence | VSP_036083 | 226-263 | in isoform 2 and isoform 3 | |||
Sequence: VTLSLSPSLISLFGNVITSTNYKILNASREYCTCLVLV → ADEEESSAVEAKIQMAIAAYNDPNCLINF |
Keywords
- Coding sequence diversity
- Technical term
Sequence databases
Nucleotide Sequence | Protein Sequence | Molecule Type | Status | |
---|---|---|---|---|
AL161575 EMBL· GenBank· DDBJ | - | Genomic DNA | No translation available. | |
CP002687 EMBL· GenBank· DDBJ | AEE85694.1 EMBL· GenBank· DDBJ | Genomic DNA | ||
CP002687 EMBL· GenBank· DDBJ | AEE85695.1 EMBL· GenBank· DDBJ | Genomic DNA | ||
CP002687 EMBL· GenBank· DDBJ | AEE85696.1 EMBL· GenBank· DDBJ | Genomic DNA | ||
CP002687 EMBL· GenBank· DDBJ | AEE85697.1 EMBL· GenBank· DDBJ | Genomic DNA | ||
CP002687 EMBL· GenBank· DDBJ | ANM67230.1 EMBL· GenBank· DDBJ | Genomic DNA | ||
AK117730 EMBL· GenBank· DDBJ | BAC42379.1 EMBL· GenBank· DDBJ | mRNA | ||
BT005869 EMBL· GenBank· DDBJ | AAO64804.1 EMBL· GenBank· DDBJ | mRNA | ||
AY568654 EMBL· GenBank· DDBJ | AAS79544.1 EMBL· GenBank· DDBJ | mRNA | ||
AJ630482 EMBL· GenBank· DDBJ | CAG25855.1 EMBL· GenBank· DDBJ | mRNA | ||
AK176201 EMBL· GenBank· DDBJ | BAD43964.1 EMBL· GenBank· DDBJ | mRNA | ||
AK176276 EMBL· GenBank· DDBJ | BAD44039.1 EMBL· GenBank· DDBJ | mRNA | ||
AK176674 EMBL· GenBank· DDBJ | BAD44437.1 EMBL· GenBank· DDBJ | mRNA | ||
AK222212 EMBL· GenBank· DDBJ | BAD95372.1 EMBL· GenBank· DDBJ | mRNA | ||
AK228201 EMBL· GenBank· DDBJ | BAF00155.1 EMBL· GenBank· DDBJ | mRNA | ||
AF488569 EMBL· GenBank· DDBJ | - | mRNA | No translation available. |