Q6RK52 · Q6RK52_PECAT

Function

Catalytic activity

  • Eliminative cleavage of (1->4)-alpha-D-galacturonan to give oligosaccharides with 4-deoxy-alpha-D-galact-4-enuronosyl groups at their non-reducing ends.
    EC:4.2.2.2 (UniProtKB | ENZYME | Rhea)

Cofactor

Ca2+ (UniProtKB | Rhea| CHEBI:29108 )

GO annotations

all annotationsall molecular functionvirus receptor activitydna bindingrna bindingcytoskeletal motor activitycatalytic activitygtpase activitystructural molecule activitytransporter activitycytoskeletal protein bindinglipid bindingcyclase activityantioxidant activityoxidoreductase activitytransferase activityhydrolase activitylyase activityisomerase activityligase activityprotein tag activitycargo receptor activityhistone bindingprotein folding chaperonetranslation regulator activitynutrient reservoir activityreceptor ligand activitymolecular transducer activitymolecular adaptor activitytoxin activitycell adhesion mediator activitymolecular function regulator activityvirus coreceptor activitycatalytic activity, acting on a proteincatalytic activity, acting on dnacatalytic activity, acting on rnamolecular carrier activitytranscription regulator activitygeneral transcription initiation factor activitymolecular sensor activitymolecular sequestering activityatp-dependent activityother molecular functionall biological processmitotic cell cyclecytokinesiscytoplasmic translationimmune system processmuscle system processcirculatory system processrenal system processrespiratory system processcarbohydrate metabolic processgeneration of precursor metabolites and energydna replicationdna repairdna recombinationchromatin organizationdna-templated transcriptionregulation of dna-templated transcriptiontrna metabolic processprotein foldingprotein glycosylationamino acid metabolic processmodified amino acid metabolic processlipid metabolic processvitamin metabolic processsulfur compound metabolic processintracellular protein transportnucleocytoplasmic transportautophagyinflammatory responsemitochondrion organizationcytoskeleton organizationmicrotubule-based movementperoxisome organizationlysosome organizationchromosome segregationcell adhesionestablishment or maintenance of cell polarityprogrammed cell deathphotosynthesismrna metabolic processsnrna metabolic processvesicle-mediated transportreproductive processdigestive system processsignalingcell differentiationprotein catabolic processextracellular matrix organizationregulatory ncrna-mediated gene silencingtelomere organizationcell junction organizationwound healingribosome biogenesiscilium organizationanatomical structure developmentcell motilitynervous system processendocrine processprotein maturationtransmembrane transportnucleobase-containing small molecule metabolic processhepaticobiliary system processmembrane organizationprotein-containing complex assemblycell wall organization or biogenesisnitrogen cycle metabolic processprotein localization to plasma membranedefense response to other organismdetoxificationmeiotic nuclear divisionmitotic nuclear divisionmitochondrial gene expressioncarbohydrate derivative metabolic processother biological processall cellular componentnuclear chromosomeextracellular regionextracellular spacecell wallnucleusnuclear envelopenucleoplasmchromosomenucleolusmitochondrionlysosomeendosomevacuoleperoxisomeendoplasmic reticulumgolgi apparatuslipid dropletmicrotubule organizing centercytosolribosomecytoskeletonplasma membraneciliumplastidthylakoidexternal encapsulating structureextracellular matrixcytoplasmic vesicleorganelleother cellular component
Cell color indicative of number of GO terms
AspectTerm
Cellular Componentextracellular region
Molecular Functionpectate lyase activity

Keywords

  • Molecular function
  • Ligand

Enzyme and pathway databases

Protein family/group databases

    • PL3Polysaccharide Lyase Family 3

Names & Taxonomy

Protein names

  • Recommended name
    pectate lyase
  • EC number

Gene names

    • Name
      hrpW

Organism names

Accessions

  • Primary accession
    Q6RK52
  • Secondary accessions
    • Q6D5C8

Subcellular Location

Keywords

  • Cellular component

Structure

Family & Domains

Features

Showing features for compositional bias, region.

Type
IDPosition(s)Description
Compositional bias1-10Polar residues
Region1-84Disordered
Compositional bias49-73Polar residues
Region106-148Disordered
Region195-290Disordered
Compositional bias280-290Polar residues

Sequence similarities

Belongs to the polysaccharide lyase 3 family.

Phylogenomic databases

Family and domain databases

Sequence

  • Sequence status
    Complete
  • Length
    479
  • Mass (Da)
    46,707
  • Last updated
    2004-07-05 v1
  • MD5 Checksum
    635EB9B0EFF6757B9453DB13A053703D
MADMTITLSIQPGAGLSSTGLNSPLSGSNGGASPRSGQQDSQLMEALSTLLSALLPNSQGNTPSSTDGSSQGQAGIGNGGSSALGQNGSAADMLMKLLEALIPSKNGQEAGNPLSSGSSGAAGGNSGASPLTGSSGAGGVGGAQNPEDLSRSLLQDSAGSALNNAINPTADGGGQLSGNDLLKALLELIGNLMDSQKGEFGQPQGSGQSQGGGSPSTGAPQASSGGGGGSPAAPSAPSSSVGGNGGAASAPLTAAPTGVDGGSAASPTASTAGAGPVSFPTASANPTVVNDTIKVGPGEVFDGGGKTFTASSKLGDGGQAEGQKPLFELAQGATLKNVVFGDNAADGVHVRGDAKIDNVHWTNVGEDALTVKSNSGKPANVEITNSSAQGASDKIFQLNADANLTIDNFKAKDFGTFVRTNGGQQGDWNLNLSNIDAENGKFSFVKSDSEGLNVKGNNINLTNVNNHYKVPDSANLQVN

Features

Showing features for compositional bias.

TypeIDPosition(s)Description
Compositional bias1-10Polar residues
Compositional bias49-73Polar residues
Compositional bias280-290Polar residues

Sequence databases

Nucleotide SequenceProtein SequenceMolecule TypeStatus
AY496066
EMBL· GenBank· DDBJ
AAS20352.1
EMBL· GenBank· DDBJ
Genomic DNA

Genome annotation databases

Similar Proteins

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