Q6NXN1 · SZRD1_MOUSE
- ProteinSUZ RNA-binding domain-containing
- GeneSzrd1
- StatusUniProtKB reviewed (Swiss-Prot)
- Organism
- Amino acids152 (go to sequence)
- Protein existenceEvidence at protein level
- Annotation score2/5
Function
Names & Taxonomy
Protein names
- Recommended nameSUZ RNA-binding domain-containing
- Short namesSUZ domain-containing protein 1
Gene names
Organism names
- Organism
- Strains
- Taxonomic lineageEukaryota > Metazoa > Chordata > Craniata > Vertebrata > Euteleostomi > Mammalia > Eutheria > Euarchontoglires > Glires > Rodentia > Myomorpha > Muroidea > Muridae > Murinae > Mus > Mus
Accessions
- Primary accessionQ6NXN1
- Secondary accessions
Proteomes
Organism-specific databases
PTM/Processing
Features
Showing features for modified residue, chain.
Type | ID | Position(s) | Description | |||
---|---|---|---|---|---|---|
Modified residue | 1 | N-acetylmethionine | ||||
Sequence: M | ||||||
Chain | PRO_0000303069 | 1-152 | SUZ RNA-binding domain-containing | |||
Sequence: MEDEEVAESWEEAADSGEIDRRLEKKLKITQKESRKSKSPPKVPIVIQDDSLPTGPPPQIRILKRPTSNGVVSSPNSTSRPALPVKSLAQREAEYAEARRRILGSASPEEEQEKPILDRPTRISQPEDSRQPSNVIRQPLGPDGSQGFKQRR | ||||||
Modified residue | 37 | Phosphoserine | ||||
Sequence: S | ||||||
Modified residue | 39 | Phosphoserine | ||||
Sequence: S | ||||||
Modified residue | 51 | Phosphoserine | ||||
Sequence: S | ||||||
Modified residue | 105 | Phosphoserine | ||||
Sequence: S | ||||||
Modified residue | 107 | Phosphoserine | ||||
Sequence: S |
Keywords
- PTM
Proteomic databases
PTM databases
Expression
Gene expression databases
Structure
Family & Domains
Features
Showing features for region, domain, compositional bias.
Type | ID | Position(s) | Description | |||
---|---|---|---|---|---|---|
Region | 30-152 | Disordered | ||||
Sequence: TQKESRKSKSPPKVPIVIQDDSLPTGPPPQIRILKRPTSNGVVSSPNSTSRPALPVKSLAQREAEYAEARRRILGSASPEEEQEKPILDRPTRISQPEDSRQPSNVIRQPLGPDGSQGFKQRR | ||||||
Domain | 42-107 | SUZ | ||||
Sequence: KVPIVIQDDSLPTGPPPQIRILKRPTSNGVVSSPNSTSRPALPVKSLAQREAEYAEARRRILGSAS | ||||||
Compositional bias | 66-84 | Polar residues | ||||
Sequence: PTSNGVVSSPNSTSRPALP | ||||||
Compositional bias | 92-125 | Basic and acidic residues | ||||
Sequence: EAEYAEARRRILGSASPEEEQEKPILDRPTRISQ | ||||||
Domain | 111-152 | SUZ-C | ||||
Sequence: EQEKPILDRPTRISQPEDSRQPSNVIRQPLGPDGSQGFKQRR | ||||||
Compositional bias | 126-140 | Polar residues | ||||
Sequence: PEDSRQPSNVIRQPL |
Sequence similarities
Belongs to the SZRD1 family.
Phylogenomic databases
Family and domain databases
Sequence & Isoform
- Sequence statusComplete
This entry describes 2 isoforms produced by Alternative splicing.
Q6NXN1-1
This isoform has been chosen as the canonical sequence. All positional information in this entry refers to it. This is also the sequence that appears in the downloadable versions of the entry.
- Name1
- Length152
- Mass (Da)16,998
- Last updated2004-07-05 v1
- Checksum3EF639D6A97DE6B1
Q6NXN1-2
- Name2
- Differences from canonical
- 1-34: MEDEEVAESWEEAADSGEIDRRLEKKLKITQKES → MRRSLRAGRRRQTAG
Computationally mapped potential isoform sequences
There is 1 potential isoform mapped to this entry
Entry | Entry name | Gene name | Length | ||
---|---|---|---|---|---|
A2AA85 | A2AA85_MOUSE | Szrd1 | 146 |
Features
Showing features for alternative sequence, compositional bias, sequence conflict.
Type | ID | Position(s) | Description | |||
---|---|---|---|---|---|---|
Alternative sequence | VSP_027998 | 1-34 | in isoform 2 | |||
Sequence: MEDEEVAESWEEAADSGEIDRRLEKKLKITQKES → MRRSLRAGRRRQTAG | ||||||
Compositional bias | 66-84 | Polar residues | ||||
Sequence: PTSNGVVSSPNSTSRPALP | ||||||
Compositional bias | 92-125 | Basic and acidic residues | ||||
Sequence: EAEYAEARRRILGSASPEEEQEKPILDRPTRISQ | ||||||
Sequence conflict | 124 | in Ref. 1; BAE42442 | ||||
Sequence: S → P | ||||||
Compositional bias | 126-140 | Polar residues | ||||
Sequence: PEDSRQPSNVIRQPL |
Keywords
- Coding sequence diversity
- Technical term
Sequence databases
Nucleotide Sequence | Protein Sequence | Molecule Type | Status | |
---|---|---|---|---|
AK027934 EMBL· GenBank· DDBJ | BAC25672.1 EMBL· GenBank· DDBJ | mRNA | ||
AK145912 EMBL· GenBank· DDBJ | BAE26745.1 EMBL· GenBank· DDBJ | mRNA | ||
AK171420 EMBL· GenBank· DDBJ | BAE42442.1 EMBL· GenBank· DDBJ | mRNA | ||
AK171702 EMBL· GenBank· DDBJ | BAE42618.1 EMBL· GenBank· DDBJ | mRNA | ||
AL645625 EMBL· GenBank· DDBJ | - | Genomic DNA | No translation available. | |
BC066992 EMBL· GenBank· DDBJ | AAH66992.1 EMBL· GenBank· DDBJ | mRNA |