Q6NNI3 · LSH1_ARATH

Function

function

Probable transcription regulator that acts as a developmental regulator by promoting cell growth in response to continuous red (cR), far-red (cFR) and blue (cB) light in a phytochrome-dependent manner, at least during seedling development.

GO annotations

all annotationsall molecular functionnucleotide bindingmolecular_functionnucleic acid bindingdna bindingchromatin bindingdna-binding transcription factor activityrna bindingcytoskeletal motor activitycatalytic activitynuclease activitysignaling receptor bindingstructural molecule activitytransporter activitybindingprotein bindingtranslation factor activity, rna bindinglipid bindingkinase activitytransferase activityhydrolase activityoxygen bindingenzyme regulator activitycarbohydrate bindingsignaling receptor activitytranslation regulator activitytranscription regulator activityother molecular functionall biological processcarbohydrate metabolic processgeneration of precursor metabolites and energynucleobase-containing compound metabolic processdna metabolic processtranslationlipid metabolic processtransportresponse to stresscell cyclecell communicationsignal transductioncell-cell signalingmulticellular organism developmentcircadian rhythmbiological_processmetabolic processcatabolic processbiosynthetic processresponse to light stimulusresponse to external stimulustropismresponse to biotic stimulusresponse to abiotic stimulusresponse to endogenous stimulusembryo developmentpost-embryonic developmentfruit ripeningabscissionpollinationflower developmentcellular processprogrammed cell deathphotosynthesiscellular component organizationcell growthprotein metabolic processcellular homeostasissecondary metabolic processreproductive processcell differentiationprotein modification processgrowthepigenetic regulation of gene expressionresponse to chemicalanatomical structure developmentregulation of molecular functionother biological processall cellular componentcellular_componentextracellular regioncell wallintracellular anatomical structurenucleusnuclear envelopenucleoplasmnucleoluscytoplasmmitochondrionlysosomeendosomevacuoleperoxisomeendoplasmic reticulumgolgi apparatuscytosolribosomecytoskeletonplasma membranechloroplastplastidthylakoidmembraneexternal encapsulating structureother cellular component
Cell color indicative of number of GO terms
AspectTerm
Cellular Componentnucleus
Molecular FunctionDNA binding
Biological ProcessmRNA transcription
Biological Processpost-embryonic plant morphogenesis
Biological Processresponse to blue light
Biological Processresponse to far red light
Biological Processresponse to light stimulus
Biological Processresponse to red light
Biological Processunidimensional cell growth

Keywords

Names & Taxonomy

Protein names

  • Recommended name
    Protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 1
  • Alternative names
    • Protein ORGAN BOUNDARY 2

Gene names

    • Name
      LSH1
    • Synonyms
      OBO2
    • ORF names
      F24J2.30
    • Ordered locus names
      At5g28490

Organism names

  • Taxonomic identifier
  • Strain
    • cv. Columbia
  • Taxonomic lineage
    Eukaryota > Viridiplantae > Streptophyta > Embryophyta > Tracheophyta > Spermatophyta > Magnoliopsida > eudicotyledons > Gunneridae > Pentapetalae > rosids > malvids > Brassicales > Brassicaceae > Camelineae > Arabidopsis

Accessions

  • Primary accession
    Q6NNI3

Proteomes

Organism-specific databases

Genome annotation databases

Subcellular Location

Keywords

PTM/Processing

Features

Showing features for chain.

TypeIDPosition(s)Description
ChainPRO_00004252881-190Protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 1

Proteomic databases

Expression

Tissue specificity

Expressed in hypocotyls, shoot apices and lateral root primordia and, weakly, in vascular tissues.

Gene expression databases

Interaction

Protein-protein interaction databases

Structure

Family & Domains

Features

Showing features for compositional bias, region, domain, motif.

Type
IDPosition(s)Description
Compositional bias1-25Polar residues
Region1-28Disordered
Domain25-152ALOG
Region145-190Disordered
Motif150-154Nuclear localization signal
Compositional bias159-190Polar residues

Sequence similarities

Phylogenomic databases

Family and domain databases

Sequence

  • Sequence status
    Complete
  • Length
    190
  • Mass (Da)
    21,653
  • Last updated
    2004-07-05 v1
  • Checksum
    0E2CEB0949FA3A4F
MDLISHQPNKNPNSSTQLTPPSSSRYENQKRRDWNTFCQYLRNHRPPLSLPSCSGAHVLEFLRYLDQFGKTKVHHQNCAFFGLPNPPAPCPCPLRQAWGSLDALIGRLRAAYEENGGPPEANPFGSRAVRLFLREVRDFQAKARGVSYEKKRKRVNRQKPQTQPPLQLQQQQQQPQQGQSMMANYSGATV

Features

Showing features for compositional bias.

TypeIDPosition(s)Description
Compositional bias1-25Polar residues
Compositional bias159-190Polar residues

Keywords

Sequence databases

Nucleotide SequenceProtein SequenceMolecule TypeStatus
AY319947
EMBL· GenBank· DDBJ
AAQ82901.1
EMBL· GenBank· DDBJ
mRNA
AF262039
EMBL· GenBank· DDBJ
-Genomic DNA No translation available.
CP002688
EMBL· GenBank· DDBJ
AED93805.1
EMBL· GenBank· DDBJ
Genomic DNA
BT010821
EMBL· GenBank· DDBJ
AAR24188.1
EMBL· GenBank· DDBJ
mRNA
BT011304
EMBL· GenBank· DDBJ
AAR92340.1
EMBL· GenBank· DDBJ
mRNA

Genome annotation databases

Similar Proteins

Disclaimer

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