Q6NNI3 · LSH1_ARATH
- ProteinProtein LIGHT-DEPENDENT SHORT HYPOCOTYLS 1
- GeneLSH1
- StatusUniProtKB reviewed (Swiss-Prot)
- Amino acids190 (go to sequence)
- Protein existenceEvidence at protein level
- Annotation score4/5
Function
function
Probable transcription regulator that acts as a developmental regulator by promoting cell growth in response to continuous red (cR), far-red (cFR) and blue (cB) light in a phytochrome-dependent manner, at least during seedling development.
GO annotations
all annotations | all molecular function | nucleotide binding | molecular_function | nucleic acid binding | dna binding | chromatin binding | dna-binding transcription factor activity | rna binding | cytoskeletal motor activity | catalytic activity | nuclease activity | signaling receptor binding | structural molecule activity | transporter activity | binding | protein binding | translation factor activity, rna binding | lipid binding | kinase activity | transferase activity | hydrolase activity | oxygen binding | enzyme regulator activity | carbohydrate binding | signaling receptor activity | translation regulator activity | transcription regulator activity | other molecular function | all biological process | carbohydrate metabolic process | generation of precursor metabolites and energy | nucleobase-containing compound metabolic process | dna metabolic process | translation | lipid metabolic process | transport | response to stress | cell cycle | cell communication | signal transduction | cell-cell signaling | multicellular organism development | circadian rhythm | biological_process | metabolic process | catabolic process | biosynthetic process | response to light stimulus | response to external stimulus | tropism | response to biotic stimulus | response to abiotic stimulus | response to endogenous stimulus | embryo development | post-embryonic development | fruit ripening | abscission | pollination | flower development | cellular process | programmed cell death | photosynthesis | cellular component organization | cell growth | protein metabolic process | cellular homeostasis | secondary metabolic process | reproductive process | cell differentiation | protein modification process | growth | epigenetic regulation of gene expression | response to chemical | anatomical structure development | regulation of molecular function | other biological process | all cellular component | cellular_component | extracellular region | cell wall | intracellular anatomical structure | nucleus | nuclear envelope | nucleoplasm | nucleolus | cytoplasm | mitochondrion | lysosome | endosome | vacuole | peroxisome | endoplasmic reticulum | golgi apparatus | cytosol | ribosome | cytoskeleton | plasma membrane | chloroplast | plastid | thylakoid | membrane | external encapsulating structure | other cellular component | |||
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Aspect | Term | |
---|---|---|
Cellular Component | nucleus | |
Molecular Function | DNA binding | |
Biological Process | mRNA transcription | |
Biological Process | post-embryonic plant morphogenesis | |
Biological Process | response to blue light | |
Biological Process | response to far red light | |
Biological Process | response to light stimulus | |
Biological Process | response to red light | |
Biological Process | unidimensional cell growth |
Keywords
- Molecular function
- Biological process
Names & Taxonomy
Protein names
- Recommended nameProtein LIGHT-DEPENDENT SHORT HYPOCOTYLS 1
- Alternative names
Gene names
Organism names
- Strain
- Taxonomic lineageEukaryota > Viridiplantae > Streptophyta > Embryophyta > Tracheophyta > Spermatophyta > Magnoliopsida > eudicotyledons > Gunneridae > Pentapetalae > rosids > malvids > Brassicales > Brassicaceae > Camelineae > Arabidopsis
Accessions
- Primary accessionQ6NNI3
Proteomes
Organism-specific databases
Genome annotation databases
Subcellular Location
PTM/Processing
Features
Showing features for chain.
Type | ID | Position(s) | Description | ||
---|---|---|---|---|---|
Chain | PRO_0000425288 | 1-190 | Protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 1 | ||
Proteomic databases
Expression
Tissue specificity
Expressed in hypocotyls, shoot apices and lateral root primordia and, weakly, in vascular tissues.
Gene expression databases
Structure
Family & Domains
Features
Showing features for compositional bias, region, domain, motif.
Type | ID | Position(s) | Description | ||
---|---|---|---|---|---|
Compositional bias | 1-25 | Polar residues | |||
Region | 1-28 | Disordered | |||
Domain | 25-152 | ALOG | |||
Region | 145-190 | Disordered | |||
Motif | 150-154 | Nuclear localization signal | |||
Compositional bias | 159-190 | Polar residues | |||
Sequence similarities
Belongs to the plant homeotic and developmental regulators ALOG protein family.
Phylogenomic databases
Family and domain databases
Sequence
- Sequence statusComplete
- Length190
- Mass (Da)21,653
- Last updated2004-07-05 v1
- Checksum0E2CEB0949FA3A4F
Features
Showing features for compositional bias.
Type | ID | Position(s) | Description | ||
---|---|---|---|---|---|
Compositional bias | 1-25 | Polar residues | |||
Compositional bias | 159-190 | Polar residues | |||
Keywords
- Technical term
Sequence databases
Nucleotide Sequence | Protein Sequence | Molecule Type | Status | |
---|---|---|---|---|
AY319947 EMBL· GenBank· DDBJ | AAQ82901.1 EMBL· GenBank· DDBJ | mRNA | ||
AF262039 EMBL· GenBank· DDBJ | - | Genomic DNA | No translation available. | |
CP002688 EMBL· GenBank· DDBJ | AED93805.1 EMBL· GenBank· DDBJ | Genomic DNA | ||
BT010821 EMBL· GenBank· DDBJ | AAR24188.1 EMBL· GenBank· DDBJ | mRNA | ||
BT011304 EMBL· GenBank· DDBJ | AAR92340.1 EMBL· GenBank· DDBJ | mRNA |