Q6LLW5 · NUDC_PHOPR
- ProteinNAD-capped RNA hydrolase NudC
- GenenudC
- StatusUniProtKB reviewed (Swiss-Prot)
- Amino acids266 (go to sequence)
- Protein existenceInferred from homology
- Annotation score4/5
Function
function
mRNA decapping enzyme that specifically removes the nicotinamide adenine dinucleotide (NAD) cap from a subset of mRNAs by hydrolyzing the diphosphate linkage to produce nicotinamide mononucleotide (NMN) and 5' monophosphate mRNA. The NAD-cap is present at the 5'-end of some mRNAs and stabilizes RNA against 5'-processing. Has preference for mRNAs with a 5'-end purine. Catalyzes the hydrolysis of a broad range of dinucleotide pyrophosphates.
Catalytic activity
- a 5'-end NAD+-phospho-ribonucleoside in mRNA + H2O = a 5'-end phospho-adenosine-phospho-ribonucleoside in mRNA + beta-nicotinamide D-ribonucleotide + 2 H+This reaction proceeds in the forward direction.
Cofactor
Protein has several cofactor binding sites:
Mn2+ (UniProtKB | Rhea| CHEBI:29035 )
Note: Divalent metal cations. Mg2+ or Mn2+.
Note: Binds 1 zinc ion per subunit.
Features
Showing features for binding site.
Type | ID | Position(s) | Description | ||
---|---|---|---|---|---|
Binding site | 74 | substrate | |||
Binding site | 103 | Zn2+ (UniProtKB | ChEBI) | |||
Binding site | 106 | Zn2+ (UniProtKB | ChEBI) | |||
Binding site | 121 | Zn2+ (UniProtKB | ChEBI) | |||
Binding site | 124 | Zn2+ (UniProtKB | ChEBI) | |||
Binding site | 129 | substrate | |||
Binding site | 163 | a divalent metal cation 1 (UniProtKB | ChEBI) | |||
Binding site | 179 | a divalent metal cation 2 (UniProtKB | ChEBI) | |||
Binding site | 179 | a divalent metal cation 3 (UniProtKB | ChEBI) | |||
Binding site | 183 | a divalent metal cation 1 (UniProtKB | ChEBI) | |||
Binding site | 183 | a divalent metal cation 3 (UniProtKB | ChEBI) | |||
Binding site | 197-204 | substrate | |||
Binding site | 224 | a divalent metal cation 1 (UniProtKB | ChEBI) | |||
Binding site | 224 | a divalent metal cation 3 (UniProtKB | ChEBI) | |||
Binding site | 246 | substrate | |||
GO annotations
Aspect | Term | |
---|---|---|
Cellular Component | cytosol | |
Molecular Function | magnesium ion binding | |
Molecular Function | manganese ion binding | |
Molecular Function | NAD+ diphosphatase activity | |
Molecular Function | NADH pyrophosphatase activity | |
Molecular Function | RNA NAD-cap (NMN-forming) hydrolase activity | |
Molecular Function | zinc ion binding | |
Biological Process | NAD catabolic process | |
Biological Process | NADH metabolic process | |
Biological Process | NADP catabolic process |
Keywords
- Molecular function
- Ligand
Enzyme and pathway databases
Names & Taxonomy
Protein names
- Recommended nameNAD-capped RNA hydrolase NudC
- EC number
- Short namesDeNADding enzyme NudC
- Alternative names
Gene names
Organism names
- Strain
- Taxonomic lineageBacteria > Pseudomonadota > Gammaproteobacteria > Vibrionales > Vibrionaceae > Photobacterium
Accessions
- Primary accessionQ6LLW5
Proteomes
Subcellular Location
UniProt Annotation
GO Annotation
PTM/Processing
Features
Showing features for chain.
Type | ID | Position(s) | Description | ||
---|---|---|---|---|---|
Chain | PRO_1000071960 | 1-266 | NAD-capped RNA hydrolase NudC | ||
Interaction
Structure
Family & Domains
Features
Showing features for domain, motif.
Type | ID | Position(s) | Description | ||
---|---|---|---|---|---|
Domain | 130-253 | Nudix hydrolase | |||
Motif | 164-185 | Nudix box | |||
Sequence similarities
Belongs to the Nudix hydrolase family. NudC subfamily.
Phylogenomic databases
Family and domain databases
Sequence
- Sequence statusComplete
- Length266
- Mass (Da)29,872
- Last updated2004-07-05 v1
- MD5 Checksum50DFAD514BB7810EC0A42CBE378A0CB7
Keywords
- Technical term
Sequence databases
Nucleotide Sequence | Protein Sequence | Molecule Type | Status | |
---|---|---|---|---|
CR378674 EMBL· GenBank· DDBJ | CAG21713.1 EMBL· GenBank· DDBJ | Genomic DNA |