Q6JAA4 · Q6JAA4_DANRE

Function

GO annotations

all annotationsall molecular functionvirus receptor activitydna bindingrna bindingcytoskeletal motor activitycatalytic activitygtpase activitystructural molecule activitytransporter activitycytoskeletal protein bindinglipid bindingcyclase activityantioxidant activityoxidoreductase activitytransferase activityhydrolase activitylyase activityisomerase activityligase activityprotein tag activitycargo receptor activityhistone bindingprotein folding chaperonetranslation regulator activitynutrient reservoir activityreceptor ligand activitymolecular transducer activitymolecular adaptor activitytoxin activitycell adhesion mediator activitymolecular function regulator activityvirus coreceptor activitycatalytic activity, acting on a proteincatalytic activity, acting on dnacatalytic activity, acting on rnamolecular carrier activitytranscription regulator activitygeneral transcription initiation factor activitymolecular sensor activitymolecular sequestering activityatp-dependent activityother molecular functionall biological processmitotic cell cyclecytokinesiscytoplasmic translationimmune system processmuscle system processcirculatory system processrenal system processrespiratory system processcarbohydrate metabolic processgeneration of precursor metabolites and energydna replicationdna repairdna recombinationchromatin organizationdna-templated transcriptionregulation of dna-templated transcriptiontrna metabolic processprotein foldingprotein glycosylationamino acid metabolic processmodified amino acid metabolic processlipid metabolic processvitamin metabolic processsulfur compound metabolic processintracellular protein transportnucleocytoplasmic transportautophagyinflammatory responsemitochondrion organizationcytoskeleton organizationmicrotubule-based movementperoxisome organizationlysosome organizationchromosome segregationcell adhesionestablishment or maintenance of cell polarityprogrammed cell deathphotosynthesismrna metabolic processsnrna metabolic processvesicle-mediated transportreproductive processdigestive system processsignalingcell differentiationprotein catabolic processextracellular matrix organizationregulatory ncrna-mediated gene silencingtelomere organizationcell junction organizationwound healingribosome biogenesiscilium organizationanatomical structure developmentcell motilitynervous system processendocrine processprotein maturationtransmembrane transportnucleobase-containing small molecule metabolic processhepaticobiliary system processmembrane organizationprotein-containing complex assemblycell wall organization or biogenesisnitrogen cycle metabolic processprotein localization to plasma membranedefense response to other organismdetoxificationmeiotic nuclear divisionmitotic nuclear divisionmitochondrial gene expressioncarbohydrate derivative metabolic processother biological processall cellular componentnuclear chromosomeextracellular regionextracellular spacecell wallnucleusnuclear envelopenucleoplasmchromosomenucleolusmitochondrionlysosomeendosomevacuoleperoxisomeendoplasmic reticulumgolgi apparatuslipid dropletmicrotubule organizing centercytosolribosomecytoskeletonplasma membraneciliumplastidthylakoidexternal encapsulating structureextracellular matrixcytoplasmic vesicleorganelleother cellular component
Cell color indicative of number of GO terms
AspectTerm
Molecular Functionchromatin binding
Molecular FunctionDNA-binding transcription factor activity, RNA polymerase II-specific
Molecular FunctionRNA polymerase II cis-regulatory region sequence-specific DNA binding
Biological Processregulation of DNA-templated transcription
Biological Processregulation of gene expression
Biological Processregulation of transcription by RNA polymerase II
Biological Processskeletal muscle tissue development

Keywords

Names & Taxonomy

Protein names

  • Submitted names
    • CCCTC-binding factor
    • Transcriptional repressor CTCF

Gene names

    • Name
      ctcf
    • Synonyms
      im:7152666

Organism names

  • Taxonomic identifier
  • Strain
    • Tuebingen
  • Taxonomic lineage
    Eukaryota > Metazoa > Chordata > Craniata > Vertebrata > Euteleostomi > Actinopterygii > Neopterygii > Teleostei > Ostariophysi > Cypriniformes > Danionidae > Danioninae > Danio

Accessions

  • Primary accession
    Q6JAA4
  • Secondary accessions
    • B3DKQ0
    • E7F7B5

Proteomes

    • Identifier
    • Component
      Alternate scaffold 18, Chromosome 18

Organism-specific databases

Expression

Gene expression databases

Family & Domains

Features

Showing features for region, domain, compositional bias.

Type
IDPosition(s)Description
Region198-248Disordered
Domain306-333C2H2-type
Domain334-361C2H2-type
Domain362-390C2H2-type
Domain391-418C2H2-type
Domain419-446C2H2-type
Domain447-475C2H2-type
Domain477-505C2H2-type
Domain507-534C2H2-type
Domain535-562C2H2-type
Domain563-586C2H2-type
Domain595-622C2H2-type
Region617-667Disordered
Compositional bias651-667Acidic residues
Region682-721Disordered

Keywords

Phylogenomic databases

Family and domain databases

Sequence

  • Sequence status
    Complete
  • Length
    798
  • Mass (Da)
    89,954
  • Last updated
    2004-07-05 v1
  • Checksum
    29AFDF15F7969186
MEGGPTEAVVEDAGDAFKAKECKTYQRRREDEEVGAELLQAAVIEQAQAEVEPVVEAQQQLVESVVSVNSSVDMMMMETLDPALLQMKTEVMEAAVGAPVAVAGAAHEATVTTVDDTQIITLQVVNMEEQQLGLGELQLVQVPVSAVPVTAATVEELQGTLVDATAMPKDGEPVICHTLPLPEGFQVVKVGANGEVETVEQDELQPQDDQPPHQEEEEEMAEPQNEDPAWSKDPDYTPPVKKVKKTKKSKLRYNTEGDKDMDVSVYDFEEEQQEGLLSEVNAEKVVGNMKPPKPTKIKKKGVKKTFQCELCSYTCPRRSNLDRHMKSHTDERPHKCHLCGRAFRTVTLLRNHLNTHTGTRPHKCTDCDMAFVTSGELVRHRRYKHTHEKPFKCSMCDYASVEVSKLKRHIRSHTGERPFQCSLCSYASRDTYKLKRHMRTHSGEKPYECYICHARFTQSGTMKMHILQKHTENVAKFHCPHCDTVIARKSDLGVHLRKQHSYIEQGRKCRYCDAVFHERYALIQHQKSHKNEKRFKCDQCDYACRQERHMVMHKRTHTGEKPYACSQCEKTFRQKQLLDMHFRRYHDPNFVPTSFVCTKCGKTFTRRNTMARHAENCTGMDSADGENGTPPKRGRGGRKRKMRSRKDDDDDDDSDEHGEPDLDDIDEEDEDDLLDEDQMGLLDQAPPSVPIPAPAEPPIKRKRGRPPKNAPKVSPTKSITKTTTAAAIIQVEDESTGAIENIIVKKEPEGTDAVVAAQPIIEEVEAVEADVETVQLTVPEAAPNGDLTPEMILSMMDR

Features

Showing features for compositional bias.

TypeIDPosition(s)Description
Compositional bias651-667Acidic residues

Keywords

Sequence databases

Nucleotide SequenceProtein SequenceMolecule TypeStatus
BX088593
EMBL· GenBank· DDBJ
-Genomic DNA No translation available.
BC163931
EMBL· GenBank· DDBJ
AAI63931.1
EMBL· GenBank· DDBJ
mRNA
BC163935
EMBL· GenBank· DDBJ
AAI63935.1
EMBL· GenBank· DDBJ
mRNA
AY547282
EMBL· GenBank· DDBJ
AAT11782.1
EMBL· GenBank· DDBJ
mRNA

Genome annotation databases

Similar Proteins

Disclaimer

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