Q6H6V4 · ARFF_ORYSJ
- ProteinAuxin response factor 6
- GeneARF6
- StatusUniProtKB reviewed (Swiss-Prot)
- Amino acids908 (go to sequence)
- Protein existenceEvidence at protein level
- Annotation score3/5
Function
function
Auxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs).
Features
Showing features for dna binding.
Type | ID | Position(s) | Description | ||
---|---|---|---|---|---|
DNA binding | 134-236 | TF-B3 | |||
GO annotations
Aspect | Term | |
---|---|---|
Cellular Component | nucleus | |
Molecular Function | DNA binding | |
Biological Process | auxin-activated signaling pathway | |
Biological Process | regulation of DNA-templated transcription |
Keywords
- Molecular function
- Biological process
Names & Taxonomy
Protein names
- Recommended nameAuxin response factor 6
- Alternative names
Gene names
Organism names
- Strain
- Taxonomic lineageEukaryota > Viridiplantae > Streptophyta > Embryophyta > Tracheophyta > Spermatophyta > Magnoliopsida > Liliopsida > Poales > Poaceae > BOP clade > Oryzoideae > Oryzeae > Oryzinae > Oryza > Oryza sativa
Accessions
- Primary accessionQ6H6V4
- Secondary accessions
Proteomes
Genome annotation databases
Subcellular Location
PTM/Processing
Features
Showing features for chain, modified residue (large scale data).
Type | ID | Position(s) | Source | Description | ||
---|---|---|---|---|---|---|
Chain | PRO_0000299260 | 1-908 | UniProt | Auxin response factor 6 | ||
Modified residue (large scale data) | 16 | PTMeXchange | Phosphoserine | |||
Proteomic databases
Expression
Tissue specificity
Expressed in roots, culms, leaves and young panicles.
Interaction
Structure
Family & Domains
Features
Showing features for region, domain.
Type | ID | Position(s) | Description | ||
---|---|---|---|---|---|
Region | 1-21 | Disordered | |||
Region | 525-556 | Disordered | |||
Domain | 777-861 | PB1 | |||
Domain
Interactions between auxin response factors (ARFs) and Aux/IAA proteins occur through their C-terminal dimerization domains III and IV.
Sequence similarities
Belongs to the ARF family.
Phylogenomic databases
Family and domain databases
Sequence
- Sequence statusComplete
- Length908
- Mass (Da)100,847
- Last updated2004-07-19 v1
- Checksum581072770ED932C3
Keywords
- Technical term
Sequence databases
Nucleotide Sequence | Protein Sequence | Molecule Type | Status | |
---|---|---|---|---|
AP004093 EMBL· GenBank· DDBJ | BAD25169.1 EMBL· GenBank· DDBJ | Genomic DNA | ||
AP004863 EMBL· GenBank· DDBJ | BAD25545.1 EMBL· GenBank· DDBJ | Genomic DNA | ||
AP008208 EMBL· GenBank· DDBJ | BAF07907.1 EMBL· GenBank· DDBJ | Genomic DNA | ||
AP014958 EMBL· GenBank· DDBJ | BAS77143.1 EMBL· GenBank· DDBJ | Genomic DNA | ||
CM000139 EMBL· GenBank· DDBJ | EAZ21860.1 EMBL· GenBank· DDBJ | Genomic DNA | ||
AK070569 EMBL· GenBank· DDBJ | BAG92035.1 EMBL· GenBank· DDBJ | mRNA | ||
AB071294 EMBL· GenBank· DDBJ | BAB85914.1 EMBL· GenBank· DDBJ | mRNA |