Q6AVD0 · YSL3_ORYSJ

Function

function

May be involved in the transport of nicotianamine-chelated metals.

GO annotations

all annotationsall molecular functionnucleotide bindingmolecular_functionnucleic acid bindingdna bindingchromatin bindingdna-binding transcription factor activityrna bindingcytoskeletal motor activitycatalytic activitynuclease activitysignaling receptor bindingstructural molecule activitytransporter activitybindingprotein bindingtranslation factor activity, rna bindinglipid bindingkinase activitytransferase activityhydrolase activityoxygen bindingenzyme regulator activitycarbohydrate bindingsignaling receptor activitytranslation regulator activitytranscription regulator activityother molecular functionall biological processcarbohydrate metabolic processgeneration of precursor metabolites and energynucleobase-containing compound metabolic processdna metabolic processtranslationlipid metabolic processtransportresponse to stresscell cyclecell communicationsignal transductioncell-cell signalingmulticellular organism developmentcircadian rhythmbiological_processmetabolic processcatabolic processbiosynthetic processresponse to light stimulusresponse to external stimulustropismresponse to biotic stimulusresponse to abiotic stimulusresponse to endogenous stimulusembryo developmentpost-embryonic developmentfruit ripeningabscissionpollinationflower developmentcellular processprogrammed cell deathphotosynthesiscellular component organizationcell growthprotein metabolic processcellular homeostasissecondary metabolic processreproductive processcell differentiationprotein modification processgrowthepigenetic regulation of gene expressionresponse to chemicalanatomical structure developmentregulation of molecular functionother biological processall cellular componentcellular_componentextracellular regioncell wallintracellular anatomical structurenucleusnuclear envelopenucleoplasmnucleoluscytoplasmmitochondrionlysosomeendosomevacuoleperoxisomeendoplasmic reticulumgolgi apparatuscytosolribosomecytoskeletonplasma membranechloroplastplastidthylakoidmembraneexternal encapsulating structureother cellular component
Cell color indicative of number of GO terms
AspectTerm
Cellular Componentmembrane
Molecular Functionoligopeptide transmembrane transporter activity

Keywords

Names & Taxonomy

Protein names

  • Recommended name
    Probable metal-nicotianamine transporter YSL3
  • Alternative names
    • Protein YELLOW STRIPE LIKE 3 (OsYSL3)

Gene names

    • Name
      YSL3
    • ORF names
      OJ1171_H02.13
    • Ordered locus names
      Os05g0251900, LOC_Os05g16280

Organism names

  • Taxonomic identifier
  • Strain
    • cv. Nipponbare
  • Taxonomic lineage
    Eukaryota > Viridiplantae > Streptophyta > Embryophyta > Tracheophyta > Spermatophyta > Magnoliopsida > Liliopsida > Poales > Poaceae > BOP clade > Oryzoideae > Oryzeae > Oryzinae > Oryza > Oryza sativa

Accessions

  • Primary accession
    Q6AVD0
  • Secondary accessions
    • Q25CI3

Proteomes

Genome annotation databases

Subcellular Location

Membrane
; Multi-pass membrane protein

Features

Showing features for transmembrane.

TypeIDPosition(s)Description
Transmembrane29-49Helical
Transmembrane58-78Helical
Transmembrane97-117Helical
Transmembrane142-162Helical
Transmembrane204-224Helical
Transmembrane265-285Helical
Transmembrane309-329Helical
Transmembrane372-392Helical
Transmembrane404-424Helical
Transmembrane448-468Helical
Transmembrane490-510Helical
Transmembrane553-573Helical
Transmembrane595-615Helical
Transmembrane628-648Helical

Keywords

PTM/Processing

Features

Showing features for chain.

TypeIDPosition(s)Description
ChainPRO_00003638661-683Probable metal-nicotianamine transporter YSL3

Proteomic databases

Interaction

Protein-protein interaction databases

Structure

Family & Domains

Sequence similarities

Belongs to the YSL (TC 2.A.67.2) family.

Keywords

Phylogenomic databases

Family and domain databases

Sequence & Isoform

Align isoforms (2)
  • Sequence status
    Complete

This entry describes 2 isoforms produced by Alternative splicing.

Q6AVD0-1

This isoform has been chosen as the canonical sequence. All positional information in this entry refers to it. This is also the sequence that appears in the downloadable versions of the entry.

  • Length
    683
  • Mass (Da)
    75,022
  • Last updated
    2009-02-10 v2
  • MD5 Checksum
    69AED4E112909DE0AACB36B8AB757388
MDAMIGDPMSATSVEAVFEKQPSPEFRELVTPRAMAVAVVLSVVICFVGMRIQMTAGIVPALNMPASILSFFLLKWLIRLLQSCGFPMLPFTRQENMFLLTCIITCLNLALTSGFATNIIGMTSTVARSLADDPDPRDIMDHVPIGKWIVYLFLVGMTGVLINVPFNQVMIIDYKLLFPTGTVIAQLINSFHTPEGAYVAKMQVATIFKVFFGSFSWSMFQWFYTAGDDCGFQHFPTFGLGLYKHRFYFDFSATYIGLGMICPHIVNFGLFFGAIISWGFLYPFLETKRGQWYQTDSPTSLNGQNGYKVFISVTLIITDGMINFLTLITTASINFYQLRKEHDLGLANYFKKHPSLNYDDRKRIEVFLANRIPIPVPVAAYITCAAISTIAIPAMFNQIKFYHLAVLYMVIPVVTFCNTYATGLTDWSVAPTYAKFTTFVFAAWIAKPGAVVASLLASGVIVAALHISSQAMQDLKSGHMTLTSPRAMVTGQIFGVAVGSILCPCVFLAFQSTTKPNAPVGSKQSDYPCPFAGLYRAIGVIGTGGVKELPKHCMTFCVVAFCVTVIIDAVVLVSQKRGWSIHRYIPSMTVIALPFFAGSYFTIDMCVGSLLLLAWTRMNAKSAEMLSSAVAAGLICGEGLFTLPSALLNMFKVQPPMCMKFLSGGEEVEAADSFLNNLGTSRT

Q6AVD0-2

  • Name
    2
  • Note
    May be due to a competing acceptor splice site.
  • See also
    sequence in UniParc or sequence clusters in UniRef
  • Differences from canonical

Sequence caution

The sequence AAT93878.1 differs from that shown. Reason: Erroneous gene model prediction
The sequence BAF16945.1 differs from that shown. Reason: Erroneous gene model prediction

Features

Showing features for alternative sequence, sequence conflict.

Type
IDPosition(s)Description
Alternative sequenceVSP_036328308-350in isoform 2
Sequence conflict451in Ref. 1; BAE91883

Keywords

Sequence databases

Nucleotide SequenceProtein SequenceMolecule TypeStatus
AB190913
EMBL· GenBank· DDBJ
BAE91883.1
EMBL· GenBank· DDBJ
mRNA
AC104274
EMBL· GenBank· DDBJ
AAT93878.1
EMBL· GenBank· DDBJ
Genomic DNA Sequence problems.
AP008211
EMBL· GenBank· DDBJ
BAF16945.1
EMBL· GenBank· DDBJ
Genomic DNA Sequence problems.
AP014961
EMBL· GenBank· DDBJ
BAS93030.1
EMBL· GenBank· DDBJ
Genomic DNA

Genome annotation databases

Similar Proteins

Disclaimer

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