Q682D3 · XRCC2_ARATH

Function

function

Involved in the homologous recombination repair (HRR) pathway of double-stranded DNA, thought to repair chromosomal fragmentation, translocations and deletions.

GO annotations

all annotationsall molecular functionnucleotide bindingmolecular_functionnucleic acid bindingdna bindingchromatin bindingdna-binding transcription factor activityrna bindingcytoskeletal motor activitycatalytic activitynuclease activitysignaling receptor bindingstructural molecule activitytransporter activitybindingprotein bindingtranslation factor activity, rna bindinglipid bindingkinase activitytransferase activityhydrolase activityoxygen bindingenzyme regulator activitycarbohydrate bindingsignaling receptor activitytranslation regulator activitytranscription regulator activityother molecular functionall biological processcarbohydrate metabolic processgeneration of precursor metabolites and energynucleobase-containing compound metabolic processdna metabolic processtranslationlipid metabolic processtransportresponse to stresscell cyclecell communicationsignal transductioncell-cell signalingmulticellular organism developmentcircadian rhythmbiological_processmetabolic processcatabolic processbiosynthetic processresponse to light stimulusresponse to external stimulustropismresponse to biotic stimulusresponse to abiotic stimulusresponse to endogenous stimulusembryo developmentpost-embryonic developmentfruit ripeningabscissionpollinationflower developmentcellular processprogrammed cell deathphotosynthesiscellular component organizationcell growthprotein metabolic processcellular homeostasissecondary metabolic processreproductive processcell differentiationprotein modification processgrowthepigenetic regulation of gene expressionresponse to chemicalanatomical structure developmentregulation of molecular functionother biological processall cellular componentcellular_componentextracellular regioncell wallintracellular anatomical structurenucleusnuclear envelopenucleoplasmnucleoluscytoplasmmitochondrionlysosomeendosomevacuoleperoxisomeendoplasmic reticulumgolgi apparatuscytosolribosomecytoskeletonplasma membranechloroplastplastidthylakoidmembraneexternal encapsulating structureother cellular component
Cell color indicative of number of GO terms
AspectTerm
Cellular ComponentRad51B-Rad51C-Rad51D-XRCC2 complex
Cellular Componentreplication fork
Molecular FunctionATP binding
Molecular FunctionATP-dependent DNA damage sensor activity
Molecular FunctionDNA binding
Biological Processdouble-strand break repair via homologous recombination
Biological Processreciprocal meiotic recombination

Keywords

Names & Taxonomy

Protein names

  • Recommended name
    DNA repair protein XRCC2 homolog
  • Alternative names
    • X-ray repair cross-complementing protein 2 homolog (AtXRCC2)

Gene names

    • Name
      XRCC2
    • ORF names
      T12B11.11
    • Ordered locus names
      At5g64520

Organism names

  • Taxonomic identifier
  • Strain
    • cv. Columbia
  • Taxonomic lineage
    Eukaryota > Viridiplantae > Streptophyta > Embryophyta > Tracheophyta > Spermatophyta > Magnoliopsida > eudicotyledons > Gunneridae > Pentapetalae > rosids > malvids > Brassicales > Brassicaceae > Camelineae > Arabidopsis

Accessions

  • Primary accession
    Q682D3
  • Secondary accessions
    • Q8GVF2
    • Q9FLG6

Proteomes

Organism-specific databases

Genome annotation databases

Subcellular Location

Keywords

PTM/Processing

Features

Showing features for chain.

TypeIDPosition(s)Description
ChainPRO_00001229501-372DNA repair protein XRCC2 homolog

Proteomic databases

PTM databases

Expression

Gene expression databases

Interaction

Protein-protein interaction databases

Structure

Family & Domains

Sequence similarities

Belongs to the RecA family. RAD51 subfamily.

Phylogenomic databases

Family and domain databases

Sequence & Isoform

Align isoforms (2)
  • Sequence status
    Complete

This entry describes 2 isoforms produced by Alternative splicing.

Q682D3-1

This isoform has been chosen as the canonical sequence. All positional information in this entry refers to it. This is also the sequence that appears in the downloadable versions of the entry.

  • Name
    1
  • Synonyms
    alpha
  • See also
    sequence in UniParc or sequence clusters in UniRef
  • Length
    372
  • Mass (Da)
    42,361
  • Last updated
    2004-11-09 v2
  • Checksum
    8B3C86FF530ED788
MGDDEARSWIRGDETAKQMLSRVLKDRAFLLIPPLHRVPLRAGNVVEITGASTSAKTQILIQAAISCILPKTWNGIHYGGLGKLVLFLDLDCRFDVLRLSQMLKHRLLQANWLGNGAWWQLEESNVKSCKSAEEKTKTVFDEELYASCMKRFLYVRCYDSLELLSSLKTLHYRIQQQEACGSQVGVLMIDSIGAFHWTDRLSSSLALETHNRKSLSLTNVVETIVQELKKLLLVHSLVVLATKGTIYEEKYPANENNRKVSSNDHFSGNVASKAQQPPFREFMPSSWQAFVTHKIIIRKSADYQSLQTGQQNLLAYSLEWLQPQLSRIDRFIVDDVRKLTTIKPFYSKLLLIYIVIPASSSHAVWYCHCLVT

Q682D3-2

  • Name
    2
  • Synonyms
    beta
  • See also
    sequence in UniParc or sequence clusters in UniRef
  • Differences from canonical
    • 168-168: K → KYFTVLQ
    • 259-289: KVSSNDHFSGNVASKAQQPPFREFMPSSWQA → SPQTTIFQGMLQVKLSNLHFVNSCLLLGRHL
    • 290-372: Missing

Computationally mapped potential isoform sequences

There are 10 potential isoforms mapped to this entry

View all
EntryEntry nameGene nameLength
A0A178UJL6A0A178UJL6_ARATHXRCC2364
A0A1P8BBI8A0A1P8BBI8_ARATHXRCC2291
A0A1P8BBG4A0A1P8BBG4_ARATHXRCC2370
A0A1P8BBG6A0A1P8BBG6_ARATHXRCC2212
A0A1P8BBH3A0A1P8BBH3_ARATHXRCC2378
A0A1P8BBF0A0A1P8BBF0_ARATHXRCC2314
A0A1P8BBF2A0A1P8BBF2_ARATHXRCC2342
A0A1P8BBF9A0A1P8BBF9_ARATHXRCC2348
F4KDQ6F4KDQ6_ARATHXRCC2342
A0A2H1ZE99A0A2H1ZE99_ARATHXRCC2348

Sequence caution

The sequence BAB11419.1 differs from that shown. Reason: Erroneous gene model prediction

Features

Showing features for alternative sequence.

TypeIDPosition(s)Description
Alternative sequenceVSP_011866168in isoform 2
Alternative sequenceVSP_011867259-289in isoform 2
Alternative sequenceVSP_011868290-372in isoform 2

Keywords

Sequence databases

Nucleotide SequenceProtein SequenceMolecule TypeStatus
AJ421043
EMBL· GenBank· DDBJ
CAD12880.1
EMBL· GenBank· DDBJ
mRNA
AB010076
EMBL· GenBank· DDBJ
BAB11419.1
EMBL· GenBank· DDBJ
Genomic DNA Sequence problems.
CP002688
EMBL· GenBank· DDBJ
AED97911.1
EMBL· GenBank· DDBJ
Genomic DNA
AK175434
EMBL· GenBank· DDBJ
BAD43197.1
EMBL· GenBank· DDBJ
mRNA

Genome annotation databases

Similar Proteins

Disclaimer

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