Q67UE8 · LYP4_ORYSJ
- ProteinLysM domain-containing GPI-anchored protein LYP4
- GeneLYP4
- StatusUniProtKB reviewed (Swiss-Prot)
- Amino acids401 (go to sequence)
- Protein existenceEvidence at protein level
- Annotation score4/5
Function
function
Functions in innate immunity. Functions as a pattern recognition receptor (PRR), sensing bacterial peptidoglycan (PGN) and fungal chitin at the cell surface. Involved in resistance against the bacterial pathogen Xanthomonas oryzae pv. oryzae (Xoo) and the fungal pathogen Magnaporthe oryzae. Binds PGN and fungal chitin in vitro (PubMed:22872757).
Involved in microbe-associated molecular patterns (MAMPs) perception and participates in the activation of defense genes against the bacterial pathogen Xanthomonas oryzae pv. oryzicola (Xoc) or the fungal pathogen Magnaporthe oryzae (PubMed:23299421).
Involved in microbe-associated molecular patterns (MAMPs) perception and participates in the activation of defense genes against the bacterial pathogen Xanthomonas oryzae pv. oryzicola (Xoc) or the fungal pathogen Magnaporthe oryzae (PubMed:23299421).
Miscellaneous
Plants silencing LYP4 exhibit significant compromised defense responses and enhanced susceptibility toward the bacterial pathogen Xanthomonas oryzae and the fungal pathogen Magnaporthe oryzae.
GO annotations
all annotations | all molecular function | nucleotide binding | molecular_function | nucleic acid binding | dna binding | chromatin binding | dna-binding transcription factor activity | rna binding | cytoskeletal motor activity | catalytic activity | nuclease activity | signaling receptor binding | structural molecule activity | transporter activity | binding | protein binding | translation factor activity, rna binding | lipid binding | kinase activity | transferase activity | hydrolase activity | oxygen binding | enzyme regulator activity | carbohydrate binding | signaling receptor activity | translation regulator activity | transcription regulator activity | other molecular function | all biological process | carbohydrate metabolic process | generation of precursor metabolites and energy | nucleobase-containing compound metabolic process | dna metabolic process | translation | lipid metabolic process | transport | response to stress | cell cycle | cell communication | signal transduction | cell-cell signaling | multicellular organism development | circadian rhythm | biological_process | metabolic process | catabolic process | biosynthetic process | response to light stimulus | response to external stimulus | tropism | response to biotic stimulus | response to abiotic stimulus | response to endogenous stimulus | embryo development | post-embryonic development | fruit ripening | abscission | pollination | flower development | cellular process | programmed cell death | photosynthesis | cellular component organization | cell growth | protein metabolic process | cellular homeostasis | secondary metabolic process | reproductive process | cell differentiation | protein modification process | growth | epigenetic regulation of gene expression | response to chemical | anatomical structure development | regulation of molecular function | other biological process | all cellular component | cellular_component | extracellular region | cell wall | intracellular anatomical structure | nucleus | nuclear envelope | nucleoplasm | nucleolus | cytoplasm | mitochondrion | lysosome | endosome | vacuole | peroxisome | endoplasmic reticulum | golgi apparatus | cytosol | ribosome | cytoskeleton | plasma membrane | chloroplast | plastid | thylakoid | membrane | external encapsulating structure | other cellular component | |||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
Aspect | Term | |
---|---|---|
Cellular Component | plasma membrane | |
Cellular Component | side of membrane | |
Biological Process | innate immune response |
Keywords
- Molecular function
- Biological process
Enzyme and pathway databases
Names & Taxonomy
Protein names
- Recommended nameLysM domain-containing GPI-anchored protein LYP4
- Alternative names
Gene names
Organism names
- Strain
- Taxonomic lineageEukaryota > Viridiplantae > Streptophyta > Embryophyta > Tracheophyta > Spermatophyta > Magnoliopsida > Liliopsida > Poales > Poaceae > BOP clade > Oryzoideae > Oryzeae > Oryzinae > Oryza > Oryza sativa
Accessions
- Primary accessionQ67UE8
Proteomes
Genome annotation databases
Subcellular Location
PTM/Processing
Features
Showing features for signal, chain, disulfide bond, glycosylation, lipidation, propeptide.
Type | ID | Position(s) | Description | |||
---|---|---|---|---|---|---|
Signal | 1-23 | |||||
Sequence: MPPPLLLLLLLAAAAAAVAPARS | ||||||
Chain | PRO_5010141336 | 24-373 | LysM domain-containing GPI-anchored protein LYP4 | |||
Sequence: KSTLESCSSSTACPALLSYTLYADLKLAELAALFSADPLAILAANSIDFAVPDPADRILPAGLPLRVPVPCACSDGIRRVTTVRYVARPGDTLASVASSVYGGLTTPDWISDSNGILGAKPDAAVDAGTTLFVPLHCACFGGVDNGLPAVYLTYVAGKGDTVAAVAQRYRTTATDLMSVNDMATPELAAGDIIVVPLPACTSSFPAFTADYGLAVANGTYAVTANRCVQCSCGPGNLDLFCVPAPLADSTCSSMQCANSSMMLGNFTLLMTSSGCSVTSCSYGGFVNGTILTTLTTALKPQCPGPHQYPPLIPPPTSSFFETYLGPSPTPMASEGGVMAGMAPTSTPAAS | ||||||
Disulfide bond | 30↔96 | |||||
Sequence: CSSSTACPALLSYTLYADLKLAELAALFSADPLAILAANSIDFAVPDPADRILPAGLPLRVPVPCAC | ||||||
Disulfide bond | 36↔162 | |||||
Sequence: CPALLSYTLYADLKLAELAALFSADPLAILAANSIDFAVPDPADRILPAGLPLRVPVPCACSDGIRRVTTVRYVARPGDTLASVASSVYGGLTTPDWISDSNGILGAKPDAAVDAGTTLFVPLHCAC | ||||||
Disulfide bond | 94↔160 | |||||
Sequence: CACSDGIRRVTTVRYVARPGDTLASVASSVYGGLTTPDWISDSNGILGAKPDAAVDAGTTLFVPLHC | ||||||
Disulfide bond | 96↔162 | |||||
Sequence: CSDGIRRVTTVRYVARPGDTLASVASSVYGGLTTPDWISDSNGILGAKPDAAVDAGTTLFVPLHCAC | ||||||
Disulfide bond | 223↔255 | |||||
Sequence: CTSSFPAFTADYGLAVANGTYAVTANRCVQCSC | ||||||
Glycosylation | 240 | N-linked (GlcNAc...) asparagine | ||||
Sequence: N | ||||||
Disulfide bond | 250↔279 | |||||
Sequence: CVQCSCGPGNLDLFCVPAPLADSTCSSMQC | ||||||
Glycosylation | 281 | N-linked (GlcNAc...) asparagine | ||||
Sequence: N | ||||||
Glycosylation | 288 | N-linked (GlcNAc...) asparagine | ||||
Sequence: N | ||||||
Glycosylation | 310 | N-linked (GlcNAc...) asparagine | ||||
Sequence: N | ||||||
Lipidation | 373 | GPI-anchor amidated serine | ||||
Sequence: S | ||||||
Propeptide | PRO_0000440896 | 374-401 | Removed in mature form | |||
Sequence: SGPPPAGRHVVGDVLGAFALCLVGNLLW |
Keywords
- PTM
Proteomic databases
PTM databases
Expression
Tissue specificity
Expressed in roots and leaves.
Induction
Induced by infection with the bacterial pathogen Xanthomonas oryzae pv. oryzae.
Structure
Family & Domains
Features
Showing features for domain.
Type | ID | Position(s) | Description | |||
---|---|---|---|---|---|---|
Domain | 106-156 | LysM 1 | ||||
Sequence: VRYVARPGDTLASVASSVYGGLTTPDWISDSNGILGAKPDAAVDAGTTLFV | ||||||
Domain | 175-218 | LysM 2 | ||||
Sequence: LTYVAGKGDTVAAVAQRYRTTATDLMSVNDMATPELAAGDIIVV |
Keywords
- Domain
Phylogenomic databases
Family and domain databases
Sequence
- Sequence statusComplete
- Sequence processingThe displayed sequence is further processed into a mature form.
- Length401
- Mass (Da)40,680
- Last updated2004-10-11 v1
- Checksum5C5B4951625AD2C0
Keywords
- Technical term
Sequence databases
Nucleotide Sequence | Protein Sequence | Molecule Type | Status | |
---|---|---|---|---|
AP005393 EMBL· GenBank· DDBJ | BAD38015.1 EMBL· GenBank· DDBJ | Genomic DNA | ||
AP005559 EMBL· GenBank· DDBJ | BAD38221.1 EMBL· GenBank· DDBJ | Genomic DNA | ||
AP008215 EMBL· GenBank· DDBJ | BAF25249.1 EMBL· GenBank· DDBJ | Genomic DNA | ||
AP014965 EMBL· GenBank· DDBJ | BAT08391.1 EMBL· GenBank· DDBJ | Genomic DNA | ||
CM000146 EMBL· GenBank· DDBJ | EEE69832.1 EMBL· GenBank· DDBJ | Genomic DNA | ||
AK059479 EMBL· GenBank· DDBJ | BAG87005.1 EMBL· GenBank· DDBJ | mRNA | ||
AK106042 EMBL· GenBank· DDBJ | BAG97526.1 EMBL· GenBank· DDBJ | mRNA |