Q5VYV7 · SLX4I_HUMAN
- ProteinProtein SLX4IP
- GeneSLX4IP
- StatusUniProtKB reviewed (Swiss-Prot)
- Organism
- Amino acids408 (go to sequence)
- Protein existenceEvidence at protein level
- Annotation score3/5
Function
Enzyme and pathway databases
Names & Taxonomy
Protein names
- Recommended nameProtein SLX4IP
- Alternative names
Gene names
Organism names
- Organism
- Taxonomic lineageEukaryota > Metazoa > Chordata > Craniata > Vertebrata > Euteleostomi > Mammalia > Eutheria > Euarchontoglires > Primates > Haplorrhini > Catarrhini > Hominidae > Homo
Accessions
- Primary accessionQ5VYV7
- Secondary accessions
Proteomes
Organism-specific databases
Disease & Variants
Involvement in disease
Features
Showing features for natural variant.
Type | ID | Position(s) | Description | |||
---|---|---|---|---|---|---|
Natural variant | VAR_035277 | 317 | in dbSNP:rs6077853 | |||
Sequence: R → Q |
Variants
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The viewer provides 441 variants from UniProt as well as other sources including ClinVar and dbSNP.
Organism-specific databases
Miscellaneous
Genetic variation databases
PTM/Processing
Features
Showing features for chain, cross-link, modified residue, modified residue (large scale data).
Type | ID | Position(s) | Source | Description | |||
---|---|---|---|---|---|---|---|
Chain | PRO_0000306119 | 1-408 | UniProt | Protein SLX4IP | |||
Sequence: MASKKFAVKCGNFAVLVDLHILPQGSNKDTSWFSEQKKEEVCLLLKETIDSRVQEYLEVRKQHRPSNAEFTRSNPLSLKGYGFQITAYFLKRGIRLRCIRSTQNAELCVFPDRFVVCVSQLAFSRDLLASQNEDLTERVLHGVSDYFAECAESSLPPSAKLRRNALKEIVKRTETKSSVTSKSQTRRDTVETSSDSVIAEIARRRNDGQASSSPPSESMGQAKDSIKAAESHWGLPVQKLEKVNQTQPEDTSGQQKPHPGERLKTGLLSRSPVCSCESASPCPKQSPRVAKTQQKRRNCSSAEDFDHHGRVSLGSDRLVPREIIVEKSKAVRVLPASELSDPGLLLKQDLAKTTSKEELHVLESLSSRHLMKNNPGQAQQTGLATNTERLSTIQNSPTKKRKKYERGH | |||||||
Cross-link | 61 | UniProt | Glycyl lysine isopeptide (Lys-Gly) (interchain with G-Cter in SUMO2) | ||||
Sequence: K | |||||||
Cross-link | 79 | UniProt | Glycyl lysine isopeptide (Lys-Gly) (interchain with G-Cter in SUMO2) | ||||
Sequence: K | |||||||
Modified residue | 130 | UniProt | Phosphoserine | ||||
Sequence: S | |||||||
Cross-link | 167 | UniProt | Glycyl lysine isopeptide (Lys-Gly) (interchain with G-Cter in SUMO2) | ||||
Sequence: K | |||||||
Cross-link | 176 | UniProt | Glycyl lysine isopeptide (Lys-Gly) (interchain with G-Cter in SUMO2) | ||||
Sequence: K | |||||||
Modified residue | 213 | UniProt | Phosphoserine | ||||
Sequence: S | |||||||
Modified residue (large scale data) | 213 | PRIDE | Phosphoserine | ||||
Sequence: S | |||||||
Cross-link | 239 | UniProt | Glycyl lysine isopeptide (Lys-Gly) (interchain with G-Cter in SUMO2) | ||||
Sequence: K | |||||||
Cross-link | 242 | UniProt | Glycyl lysine isopeptide (Lys-Gly) (interchain with G-Cter in SUMO2) | ||||
Sequence: K | |||||||
Cross-link | 256 | UniProt | Glycyl lysine isopeptide (Lys-Gly) (interchain with G-Cter in SUMO2) | ||||
Sequence: K | |||||||
Modified residue (large scale data) | 269 | PRIDE | Phosphoserine | ||||
Sequence: S | |||||||
Modified residue (large scale data) | 271 | PRIDE | Phosphoserine | ||||
Sequence: S | |||||||
Modified residue (large scale data) | 280 | PRIDE | Phosphoserine | ||||
Sequence: S | |||||||
Cross-link | 291 | UniProt | Glycyl lysine isopeptide (Lys-Gly) (interchain with G-Cter in SUMO2) | ||||
Sequence: K | |||||||
Cross-link | 347 | UniProt | Glycyl lysine isopeptide (Lys-Gly) (interchain with G-Cter in SUMO2) | ||||
Sequence: K | |||||||
Cross-link | 356 | UniProt | Glycyl lysine isopeptide (Lys-Gly) (interchain with G-Cter in SUMO2) | ||||
Sequence: K | |||||||
Cross-link | 372 | UniProt | Glycyl lysine isopeptide (Lys-Gly) (interchain with G-Cter in SUMO2) | ||||
Sequence: K | |||||||
Modified residue | 392 | UniProt | Phosphothreonine | ||||
Sequence: T | |||||||
Modified residue (large scale data) | 396 | PRIDE | Phosphoserine | ||||
Sequence: S | |||||||
Cross-link | 399 | UniProt | Glycyl lysine isopeptide (Lys-Gly) (interchain with G-Cter in SUMO2) | ||||
Sequence: K |
Keywords
- PTM
Proteomic databases
PTM databases
Expression
Interaction
Subunit
Interacts with SLX4/BTBD12; subunit of different structure-specific endonucleases.
Binary interactions
Type | Entry 1 | Entry 2 | Number of experiments | Intact | |
---|---|---|---|---|---|
BINARY | Q5VYV7 | SLX4 Q8IY92 | 4 | EBI-2370881, EBI-2370740 |
Protein-protein interaction databases
Miscellaneous
Structure
Family & Domains
Features
Showing features for region, compositional bias.
Type | ID | Position(s) | Description | |||
---|---|---|---|---|---|---|
Region | 173-226 | Disordered | ||||
Sequence: TETKSSVTSKSQTRRDTVETSSDSVIAEIARRRNDGQASSSPPSESMGQAKDSI | ||||||
Compositional bias | 176-196 | Polar residues | ||||
Sequence: KSSVTSKSQTRRDTVETSSDS | ||||||
Compositional bias | 206-220 | Polar residues | ||||
Sequence: NDGQASSSPPSESMG | ||||||
Region | 243-313 | Disordered | ||||
Sequence: VNQTQPEDTSGQQKPHPGERLKTGLLSRSPVCSCESASPCPKQSPRVAKTQQKRRNCSSAEDFDHHGRVSL | ||||||
Compositional bias | 271-296 | Polar residues | ||||
Sequence: SPVCSCESASPCPKQSPRVAKTQQKR | ||||||
Compositional bias | 297-313 | Basic and acidic residues | ||||
Sequence: RNCSSAEDFDHHGRVSL | ||||||
Region | 365-408 | Disordered | ||||
Sequence: LSSRHLMKNNPGQAQQTGLATNTERLSTIQNSPTKKRKKYERGH | ||||||
Compositional bias | 367-394 | Polar residues | ||||
Sequence: SRHLMKNNPGQAQQTGLATNTERLSTIQ |
Sequence similarities
Belongs to the SLX4IP family.
Phylogenomic databases
Family and domain databases
Sequence
- Sequence statusComplete
- Length408
- Mass (Da)45,552
- Last updated2004-12-07 v1
- Checksum4CBC9DF90E3B14E9
Computationally mapped potential isoform sequences
There is 1 potential isoform mapped to this entry
Entry | Entry name | Gene name | Length | ||
---|---|---|---|---|---|
H0YD23 | H0YD23_HUMAN | SLX4IP | 78 |
Sequence caution
Features
Showing features for compositional bias.
Type | ID | Position(s) | Description | |||
---|---|---|---|---|---|---|
Compositional bias | 176-196 | Polar residues | ||||
Sequence: KSSVTSKSQTRRDTVETSSDS | ||||||
Compositional bias | 206-220 | Polar residues | ||||
Sequence: NDGQASSSPPSESMG | ||||||
Compositional bias | 271-296 | Polar residues | ||||
Sequence: SPVCSCESASPCPKQSPRVAKTQQKR | ||||||
Compositional bias | 297-313 | Basic and acidic residues | ||||
Sequence: RNCSSAEDFDHHGRVSL | ||||||
Compositional bias | 367-394 | Polar residues | ||||
Sequence: SRHLMKNNPGQAQQTGLATNTERLSTIQ |
Keywords
- Technical term
Sequence databases
Nucleotide Sequence | Protein Sequence | Molecule Type | Status | |
---|---|---|---|---|
AL133340 EMBL· GenBank· DDBJ | - | Genomic DNA | No translation available. | |
AL353599 EMBL· GenBank· DDBJ | - | Genomic DNA | No translation available. | |
AL035456 EMBL· GenBank· DDBJ | - | Genomic DNA | No translation available. | |
BC020787 EMBL· GenBank· DDBJ | AAH20787.1 EMBL· GenBank· DDBJ | mRNA | Sequence problems. | |
BC026094 EMBL· GenBank· DDBJ | AAH26094.1 EMBL· GenBank· DDBJ | mRNA | Sequence problems. |