Q5QM25 · IRX9L_ORYSJ

Function

function

Probable beta-1,4-xylosyltransferase involved in xylan biosynthesis in cell walls.

GO annotations

all annotationsall molecular functionnucleotide bindingmolecular_functionnucleic acid bindingdna bindingchromatin bindingdna-binding transcription factor activityrna bindingcytoskeletal motor activitycatalytic activitynuclease activitysignaling receptor bindingstructural molecule activitytransporter activitybindingprotein bindingtranslation factor activity, rna bindinglipid bindingkinase activitytransferase activityhydrolase activityoxygen bindingenzyme regulator activitycarbohydrate bindingsignaling receptor activitytranslation regulator activitytranscription regulator activityother molecular functionall biological processcarbohydrate metabolic processgeneration of precursor metabolites and energynucleobase-containing compound metabolic processdna metabolic processtranslationlipid metabolic processtransportresponse to stresscell cyclecell communicationsignal transductioncell-cell signalingmulticellular organism developmentcircadian rhythmbiological_processmetabolic processcatabolic processbiosynthetic processresponse to light stimulusresponse to external stimulustropismresponse to biotic stimulusresponse to abiotic stimulusresponse to endogenous stimulusembryo developmentpost-embryonic developmentfruit ripeningabscissionpollinationflower developmentcellular processprogrammed cell deathphotosynthesiscellular component organizationcell growthprotein metabolic processcellular homeostasissecondary metabolic processreproductive processcell differentiationprotein modification processgrowthepigenetic regulation of gene expressionresponse to chemicalanatomical structure developmentregulation of molecular functionother biological processall cellular componentcellular_componentextracellular regioncell wallintracellular anatomical structurenucleusnuclear envelopenucleoplasmnucleoluscytoplasmmitochondrionlysosomeendosomevacuoleperoxisomeendoplasmic reticulumgolgi apparatuscytosolribosomecytoskeletonplasma membranechloroplastplastidthylakoidmembraneexternal encapsulating structureother cellular component
Cell color indicative of number of GO terms
AspectTerm
Cellular ComponentGolgi membrane
Molecular Functiongalactosylgalactosylxylosylprotein 3-beta-glucuronosyltransferase activity
Molecular Functionxylosyltransferase activity
Biological Processcell wall organization
Biological Processglucuronoxylan biosynthetic process
Biological Processplant-type secondary cell wall biogenesis
Biological Processxylan biosynthetic process

Keywords

Enzyme and pathway databases

Names & Taxonomy

Protein names

  • Recommended name
    Probable beta-1,4-xylosyltransferase IRX9L
  • EC number
  • Alternative names
    • OsGT43F
    • Probable glucuronosyltransferase Os01g0675500
    • Protein IRREGULAR XYLEM 9 homolog L
      (OsIRX9L
      )

Gene names

    • Name
      IRX9L
    • Synonyms
      GT43F
    • ORF names
      OJ1117_G01.11
      , OsJ_02989
      , P0485G01.45
    • Ordered locus names
      Os01g0675500
      , LOC_Os01g48440

Organism names

  • Taxonomic identifier
  • Strain
    • cv. Nipponbare
  • Taxonomic lineage
    Eukaryota > Viridiplantae > Streptophyta > Embryophyta > Tracheophyta > Spermatophyta > Magnoliopsida > Liliopsida > Poales > Poaceae > BOP clade > Oryzoideae > Oryzeae > Oryzinae > Oryza > Oryza sativa

Accessions

  • Primary accession
    Q5QM25
  • Secondary accessions
    • A0A023ND33
    • Q5QM24

Proteomes

Genome annotation databases

Subcellular Location

Golgi apparatus membrane
; Single-pass type II membrane protein

Features

Showing features for topological domain, transmembrane.

TypeIDPosition(s)Description
Topological domain1-85Cytoplasmic
Transmembrane86-106Helical; Signal-anchor for type II membrane protein
Topological domain107-446Lumenal

Keywords

PTM/Processing

Features

Showing features for chain, modified residue (large scale data), glycosylation.

TypeIDPosition(s)SourceDescription
ChainPRO_00004075541-446UniProtProbable beta-1,4-xylosyltransferase IRX9L
Modified residue (large scale data)14PTMeXchangePhosphoserine
Glycosylation185UniProtN-linked (GlcNAc...) asparagine
Glycosylation258UniProtN-linked (GlcNAc...) asparagine
Glycosylation361UniProtN-linked (GlcNAc...) asparagine
Glycosylation411UniProtN-linked (GlcNAc...) asparagine

Keywords

Proteomic databases

PTM databases

Expression

Gene expression databases

Interaction

Protein-protein interaction databases

Structure

Family & Domains

Features

Showing features for region.

TypeIDPosition(s)Description
Region1-26Disordered

Sequence similarities

Belongs to the glycosyltransferase 43 family.

Keywords

Phylogenomic databases

Family and domain databases

Sequence & Isoform

Align isoforms (2)
  • Sequence status
    Complete

This entry describes 2 isoforms produced by Alternative splicing.

Q5QM25-1

This isoform has been chosen as the canonical sequence. All positional information in this entry refers to it. This is also the sequence that appears in the downloadable versions of the entry.

  • Length
    446
  • Mass (Da)
    50,318
  • Last updated
    2005-01-04 v1
  • Checksum
    4D10B0198285AD1E
MSRRNAGAMQREGSVKDWEEFDPSPSPKLAYSQSYVAMRGLLTSVASLDLVLMSSSLKSAWAAISSHKHARSLERSRSKGMSLKRAMLQLLVCFMVGIFIGFTPPFSVDLPGKIASENGRLPFDGDAIDRRQMVERQGTKLEPFVAEAESEASSEPQVEEGPPVPAMLDDEADFVEASPIVHSVNDSGIVVRKHLIIITTTSVRPHQAYYLNRLAHVLKDVPPPLLWIVAEWPYQSRETAEILRSSGIMYRHLICNRNTTNIRKIVVCQKNNAIFHIKKHRLDGIVHFADEERAYSADLFEEMRKIRRFGTWPVAIHVGTKYRVVLEGPVCKGNQVTGWHTNQRRGVSRRFPIGFSGFAFNSTILWDPQRWNSPTLESIIVHSGGRGGLQESRFIEKLVEDESQMEGLGDNCTRVMVWNFELEPPQVNYPIGWLLQRNLDAVVPIT

Q5QM25-2

  • Name
    2
  • See also
    sequence in UniParc or sequence clusters in UniRef
  • Differences from canonical
    • 391-408: ESRFIEKLVEDESQMEGL → LNTPFQDLVSSVNLLHNY
    • 409-446: Missing

Computationally mapped potential isoform sequences

There is 1 potential isoform mapped to this entry

View all
EntryEntry nameGene nameLength
A0A0P0V6K3A0A0P0V6K3_ORYSJOs01g0675500255

Sequence caution

The sequence BAD73381.1 differs from that shown. Reason: Erroneous initiation Truncated N-terminus.
The sequence BAD73528.1 differs from that shown. Reason: Erroneous initiation Truncated N-terminus.

Features

Showing features for sequence conflict, alternative sequence.

TypeIDPosition(s)Description
Sequence conflict311in Ref. 7; AK069674
Alternative sequenceVSP_040955391-408in isoform 2
Alternative sequenceVSP_040956409-446in isoform 2

Keywords

Sequence databases

Nucleotide SequenceProtein SequenceMolecule TypeStatus
KJ206903
EMBL· GenBank· DDBJ
AHW98786.1
EMBL· GenBank· DDBJ
mRNA
AP003264
EMBL· GenBank· DDBJ
BAD73380.1
EMBL· GenBank· DDBJ
Genomic DNA
AP003264
EMBL· GenBank· DDBJ
BAD73381.1
EMBL· GenBank· DDBJ
Genomic DNA Different initiation
AP003374
EMBL· GenBank· DDBJ
BAD73527.1
EMBL· GenBank· DDBJ
Genomic DNA
AP003374
EMBL· GenBank· DDBJ
BAD73528.1
EMBL· GenBank· DDBJ
Genomic DNA Different initiation
AP008207
EMBL· GenBank· DDBJ
BAF05760.1
EMBL· GenBank· DDBJ
Genomic DNA
AP014957
EMBL· GenBank· DDBJ
BAS73653.1
EMBL· GenBank· DDBJ
Genomic DNA
CM000138
EMBL· GenBank· DDBJ
EAZ13068.1
EMBL· GenBank· DDBJ
Genomic DNA
AK062112
EMBL· GenBank· DDBJ
-mRNA No translation available.
AK069674
EMBL· GenBank· DDBJ
-mRNA No translation available.

Genome annotation databases

Similar Proteins

Disclaimer

Any medical or genetic information present in this entry is provided for research, educational and informational purposes only. It is not in any way intended to be used as a substitute for professional medical advice, diagnosis, treatment or care. Our staff consists of biologists and biochemists that are not trained to give medical advice.
We'd like to inform you that we have updated our Privacy Notice to comply with Europe’s new General Data Protection Regulation (GDPR) that applies since 25 May 2018.
FeedbackHelp