Q5BEP0 · YSH1_EMENI
- ProteinEndoribonuclease ysh1
- Geneysh1
- StatusUniProtKB reviewed (Swiss-Prot)
- Amino acids884 (go to sequence)
- Protein existenceInferred from homology
- Annotation score3/5
Function
function
Component of the cleavage factor I (CF I) involved in pre-mRNA 3'-end processing.
Features
Showing features for binding site, active site.
Type | ID | Position(s) | Description | ||
---|---|---|---|---|---|
Binding site | 83 | Zn2+ 1 (UniProtKB | ChEBI) | |||
Binding site | 85 | Zn2+ 1 (UniProtKB | ChEBI) | |||
Binding site | 87 | Zn2+ 2 (UniProtKB | ChEBI) | |||
Binding site | 88 | Zn2+ 2 (UniProtKB | ChEBI) | |||
Binding site | 174 | Zn2+ 1 (UniProtKB | ChEBI) | |||
Binding site | 195 | Zn2+ 1 (UniProtKB | ChEBI) | |||
Binding site | 195 | Zn2+ 2 (UniProtKB | ChEBI) | |||
Active site | 446 | Proton donor | |||
Binding site | 468 | Zn2+ 2 (UniProtKB | ChEBI) | |||
GO annotations
Aspect | Term | |
---|---|---|
Cellular Component | mRNA cleavage and polyadenylation specificity factor complex | |
Molecular Function | 5'-3' RNA exonuclease activity | |
Molecular Function | metal ion binding | |
Molecular Function | RNA binding | |
Molecular Function | RNA endonuclease activity | |
Biological Process | mRNA processing |
Keywords
- Molecular function
- Biological process
- Ligand
Enzyme and pathway databases
Names & Taxonomy
Protein names
- Recommended nameEndoribonuclease ysh1
- EC number
- Alternative names
Gene names
Organism names
- Strain
- Taxonomic lineageEukaryota > Fungi > Dikarya > Ascomycota > Pezizomycotina > Eurotiomycetes > Eurotiomycetidae > Eurotiales > Aspergillaceae > Aspergillus > Aspergillus subgen. Nidulantes
Accessions
- Primary accessionQ5BEP0
- Secondary accessions
Proteomes
Organism-specific databases
Subcellular Location
PTM/Processing
Features
Showing features for chain.
Type | ID | Position(s) | Description | ||
---|---|---|---|---|---|
Chain | PRO_0000238902 | 1-884 | Endoribonuclease ysh1 | ||
Interaction
Protein-protein interaction databases
Structure
Family & Domains
Features
Showing features for region, compositional bias.
Type | ID | Position(s) | Description | ||
---|---|---|---|---|---|
Region | 595-626 | Disordered | |||
Compositional bias | 605-619 | Basic and acidic residues | |||
Region | 678-705 | Disordered | |||
Compositional bias | 684-695 | Basic residues | |||
Region | 734-780 | Disordered | |||
Compositional bias | 762-780 | Polar residues | |||
Sequence similarities
Belongs to the metallo-beta-lactamase superfamily. RNA-metabolizing metallo-beta-lactamase-like family. CPSF2/YSH1 subfamily.
Phylogenomic databases
Family and domain databases
Sequence
- Sequence statusComplete
- Length884
- Mass (Da)97,685
- Last updated2005-04-26 v1
- MD5 Checksum8C84B972BF067EB81CDC38DC6AA7DFA4
Features
Showing features for compositional bias.
Type | ID | Position(s) | Description | ||
---|---|---|---|---|---|
Compositional bias | 605-619 | Basic and acidic residues | |||
Compositional bias | 684-695 | Basic residues | |||
Compositional bias | 762-780 | Polar residues | |||
Keywords
- Technical term
Sequence databases
Nucleotide Sequence | Protein Sequence | Molecule Type | Status | |
---|---|---|---|---|
AACD01000015 EMBL· GenBank· DDBJ | EAA65558.1 EMBL· GenBank· DDBJ | Genomic DNA | ||
BN001308 EMBL· GenBank· DDBJ | CBF88384.1 EMBL· GenBank· DDBJ | Genomic DNA |