Q497V5 · SRBD1_MOUSE

  • Protein
    S1 RNA-binding domain-containing protein 1
  • Gene
    Srbd1
  • Status
    UniProtKB reviewed (Swiss-Prot)
  • Amino acids
  • Protein existence
    Evidence at transcript level
  • Annotation score
    3/5

Function

GO annotations

all annotationsall molecular functionvirus receptor activitydna bindingrna bindingcytoskeletal motor activitycatalytic activitygtpase activitystructural molecule activitytransporter activitycytoskeletal protein bindinglipid bindingcyclase activityantioxidant activityoxidoreductase activitytransferase activityhydrolase activitylyase activityisomerase activityligase activityprotein tag activitycargo receptor activityhistone bindingprotein folding chaperonetranslation regulator activitynutrient reservoir activityreceptor ligand activitymolecular transducer activitymolecular adaptor activitytoxin activitycell adhesion mediator activitymolecular function regulator activityvirus coreceptor activitycatalytic activity, acting on a proteincatalytic activity, acting on dnacatalytic activity, acting on rnamolecular carrier activitytranscription regulator activitygeneral transcription initiation factor activitymolecular sensor activitymolecular sequestering activityatp-dependent activityother molecular functionall biological processmitotic cell cyclecytokinesiscytoplasmic translationimmune system processmuscle system processcirculatory system processrenal system processrespiratory system processcarbohydrate metabolic processgeneration of precursor metabolites and energydna replicationdna repairdna recombinationchromatin organizationdna-templated transcriptionregulation of dna-templated transcriptiontrna metabolic processprotein foldingprotein glycosylationamino acid metabolic processmodified amino acid metabolic processlipid metabolic processvitamin metabolic processsulfur compound metabolic processintracellular protein transportnucleocytoplasmic transportautophagyinflammatory responsemitochondrion organizationcytoskeleton organizationmicrotubule-based movementperoxisome organizationlysosome organizationchromosome segregationcell adhesionestablishment or maintenance of cell polarityprogrammed cell deathphotosynthesismrna metabolic processsnrna metabolic processvesicle-mediated transportreproductive processdigestive system processsignalingcell differentiationprotein catabolic processextracellular matrix organizationregulatory ncrna-mediated gene silencingtelomere organizationcell junction organizationwound healingribosome biogenesiscilium organizationanatomical structure developmentcell motilitynervous system processendocrine processprotein maturationtransmembrane transportnucleobase-containing small molecule metabolic processhepaticobiliary system processmembrane organizationprotein-containing complex assemblycell wall organization or biogenesisnitrogen cycle metabolic processprotein localization to plasma membranedefense response to other organismdetoxificationmeiotic nuclear divisionmitotic nuclear divisionmitochondrial gene expressioncarbohydrate derivative metabolic processother biological processall cellular componentnuclear chromosomeextracellular regionextracellular spacecell wallnucleusnuclear envelopenucleoplasmchromosomenucleolusmitochondrionlysosomeendosomevacuoleperoxisomeendoplasmic reticulumgolgi apparatuslipid dropletmicrotubule organizing centercytosolribosomecytoskeletonplasma membraneciliumplastidthylakoidexternal encapsulating structureextracellular matrixcytoplasmic vesicleorganelleother cellular component
Cell color indicative of number of GO terms
AspectTerm
Molecular FunctionmRNA binding
Molecular Functionstructural constituent of ribosome
Biological Processnucleobase-containing compound metabolic process
Biological Processtranslation

Keywords

Names & Taxonomy

Protein names

  • Recommended name
    S1 RNA-binding domain-containing protein 1

Gene names

    • Name
      Srbd1

Organism names

  • Taxonomic identifier
  • Strain
    • C57BL/6J
  • Taxonomic lineage
    Eukaryota > Metazoa > Chordata > Craniata > Vertebrata > Euteleostomi > Mammalia > Eutheria > Euarchontoglires > Glires > Rodentia > Myomorpha > Muroidea > Muridae > Murinae > Mus > Mus

Accessions

  • Primary accession
    Q497V5

Proteomes

Organism-specific databases

PTM/Processing

Features

Showing features for chain, cross-link, modified residue.

TypeIDPosition(s)Description
ChainPRO_00002843581-982S1 RNA-binding domain-containing protein 1
Cross-link84Glycyl lysine isopeptide (Lys-Gly) (interchain with G-Cter in SUMO2)
Cross-link130Glycyl lysine isopeptide (Lys-Gly) (interchain with G-Cter in SUMO2)
Cross-link161Glycyl lysine isopeptide (Lys-Gly) (interchain with G-Cter in SUMO2)
Cross-link162Glycyl lysine isopeptide (Lys-Gly) (interchain with G-Cter in SUMO2)
Cross-link942Glycyl lysine isopeptide (Lys-Gly) (interchain with G-Cter in SUMO2)
Modified residue951Phosphoserine

Keywords

Proteomic databases

PTM databases

Interaction

Protein-protein interaction databases

Miscellaneous

Structure

Family & Domains

Features

Showing features for region, compositional bias, coiled coil, domain.

TypeIDPosition(s)Description
Region1-153Disordered
Compositional bias30-49Basic and acidic residues
Compositional bias50-67Basic residues
Compositional bias68-84Basic and acidic residues
Compositional bias139-153Polar residues
Coiled coil256-283
Domain906-979S1 motif

Keywords

Phylogenomic databases

Family and domain databases

Sequence & Isoform

Align isoforms (2)
  • Sequence status
    Complete

This entry describes 2 isoforms produced by Alternative splicing.

Q497V5-1

This isoform has been chosen as the canonical sequence. All positional information in this entry refers to it. This is also the sequence that appears in the downloadable versions of the entry.

  • Length
    982
  • Mass (Da)
    110,281
  • Last updated
    2018-10-10 v3
  • Checksum
    917DF85563A61B3B
MPSLRKRVKIQAENAEPKDECSFFSELSSGSEEDNKEDSIWEPQKKVPRNRRQPASKGSKRKQGPRAKKSSQQVDDESKDVAVKEELNSPVAIVDADLEEKSHKLQTTKTLKTAAKKQKKPVPRAKKRLKVDEETSQASPLEGGGSNVETPSTSACGNVCKKEESEDSFTFGQSPVKRIRTESCPQGRPARVPDGVSDIKEEVEMNWDVVQVLSERTNIEPWVCANIIRLFNDDNTIPFIVRYRKELINNLDADFLREVRQTLDELRDVAKKVHSRIQKIKKEGKMSECLLQALLNCKTFEELEHVSAPYKMGSKGTKAQRAKQLGLEGAAWTLLENPGQLNLLSYIKPDVKGLSELNDIETGVQHILADMIAKDKDTLDFIRGLCKHRYICIQSSLAKVSSKKVNEKEVDKFQLYQNFSCNIRTIHHHQILAINRGENLKILTVKVNISDGVKNEFCRWCIQNRWRPRGFARPELMKILHNSLDDSFKRLIVPLLCREFRAKLTSDAEKQSVMMFGQNLRQLLLTSPVPGRTLMGVDPGYKHGCKLAIISPTSQILHTDVVYLHCGQGFREAEKIKRLLLHFNCRTVVIGNGTACRETEAYFADLIMKNYFAPLDVVYCIVSEAGASIYSVSPEANKEMPGLDPNLRSAVSIARRVQDPLAELVKFDPKHIGVGMYQHDVSQTLLKATLDSVVEECVSFVGVDINICSEVLLRHIAGLNANRAKNIIEWREKNGPFINREQLKKVKGLGPKSFQQCAGFVRINQDYIRTFCSSQHTDSSGQSQETAMVTNEKLGKKKNKADATLIPNPLDQTCIHPESYDIAVRFLSFIGGTMCEIGKPEMQQKINVSLGKEGIEETAERLQTTVHTLQVIIDGLSQPKTFDIRTDFDKPDFKRSIVCLEDLQVGTVLTGKVENATLFGVFVDIGVGKAGLIPIRFITEAKLSKTKRRRSLGLGPGEKVEVKVLNVDIPRSRISLDLLRVL

Q497V5-2

  • Name
    2
  • See also
    sequence in UniParc or sequence clusters in UniRef
  • Differences from canonical

Computationally mapped potential isoform sequences

There are 4 potential isoforms mapped to this entry

View all
EntryEntry nameGene nameLength
B7ZWI4B7ZWI4_MOUSESrbd1195
B7ZWI7B7ZWI7_MOUSESrbd1170
F8WGW3F8WGW3_MOUSESrbd1981
Q8CHZ0Q8CHZ0_MOUSESrbd1280

Features

Showing features for alternative sequence, compositional bias.

TypeIDPosition(s)Description
Alternative sequenceVSP_0244621-370in isoform 2
Compositional bias30-49Basic and acidic residues
Compositional bias50-67Basic residues
Compositional bias68-84Basic and acidic residues
Compositional bias139-153Polar residues
Alternative sequenceVSP_024464773in isoform 2

Keywords

Sequence databases

Nucleotide SequenceProtein SequenceMolecule TypeStatus
AC154185
EMBL· GenBank· DDBJ
-Genomic DNA No translation available.
AC154542
EMBL· GenBank· DDBJ
-Genomic DNA No translation available.
BC100359
EMBL· GenBank· DDBJ
AAI00360.1
EMBL· GenBank· DDBJ
mRNA

Similar Proteins

Disclaimer

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