Q3U5S6 · Q3U5S6_MOUSE
- ProteinSyndecan
- GeneSdc4
- StatusUniProtKB unreviewed (TrEMBL)
- Organism
- Amino acids198 (go to sequence)
- Protein existenceEvidence at protein level
- Annotation score3/5
Function
function
Cell surface proteoglycan.
GO annotations
all annotations | all molecular function | virus receptor activity | dna binding | rna binding | cytoskeletal motor activity | catalytic activity | gtpase activity | structural molecule activity | transporter activity | cytoskeletal protein binding | lipid binding | cyclase activity | antioxidant activity | oxidoreductase activity | transferase activity | hydrolase activity | lyase activity | isomerase activity | ligase activity | protein tag activity | cargo receptor activity | histone binding | protein folding chaperone | translation regulator activity | nutrient reservoir activity | receptor ligand activity | molecular transducer activity | molecular adaptor activity | toxin activity | cell adhesion mediator activity | molecular function regulator activity | virus coreceptor activity | catalytic activity, acting on a protein | catalytic activity, acting on dna | catalytic activity, acting on rna | molecular carrier activity | transcription regulator activity | general transcription initiation factor activity | molecular sensor activity | molecular sequestering activity | atp-dependent activity | other molecular function | all biological process | mitotic cell cycle | cytokinesis | cytoplasmic translation | immune system process | muscle system process | circulatory system process | renal system process | respiratory system process | carbohydrate metabolic process | generation of precursor metabolites and energy | dna replication | dna repair | dna recombination | chromatin organization | dna-templated transcription | regulation of dna-templated transcription | trna metabolic process | protein folding | protein glycosylation | amino acid metabolic process | modified amino acid metabolic process | lipid metabolic process | vitamin metabolic process | sulfur compound metabolic process | intracellular protein transport | nucleocytoplasmic transport | autophagy | inflammatory response | mitochondrion organization | cytoskeleton organization | microtubule-based movement | peroxisome organization | lysosome organization | chromosome segregation | cell adhesion | establishment or maintenance of cell polarity | programmed cell death | photosynthesis | mrna metabolic process | snrna metabolic process | vesicle-mediated transport | reproductive process | digestive system process | signaling | cell differentiation | protein catabolic process | extracellular matrix organization | regulatory ncrna-mediated gene silencing | telomere organization | cell junction organization | wound healing | ribosome biogenesis | cilium organization | anatomical structure development | cell motility | nervous system process | endocrine process | protein maturation | transmembrane transport | nucleobase-containing small molecule metabolic process | hepaticobiliary system process | membrane organization | protein-containing complex assembly | cell wall organization or biogenesis | nitrogen cycle metabolic process | protein localization to plasma membrane | defense response to other organism | detoxification | meiotic nuclear division | mitotic nuclear division | mitochondrial gene expression | carbohydrate derivative metabolic process | other biological process | all cellular component | nuclear chromosome | extracellular region | extracellular space | cell wall | nucleus | nuclear envelope | nucleoplasm | chromosome | nucleolus | mitochondrion | lysosome | endosome | vacuole | peroxisome | endoplasmic reticulum | golgi apparatus | lipid droplet | microtubule organizing center | cytosol | ribosome | cytoskeleton | plasma membrane | cilium | plastid | thylakoid | external encapsulating structure | extracellular matrix | cytoplasmic vesicle | organelle | other cellular component | |||
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Aspect | Term | |
---|---|---|
Cellular Component | cell surface | |
Cellular Component | costamere | |
Cellular Component | focal adhesion | |
Cellular Component | membrane | |
Molecular Function | fibronectin binding | |
Molecular Function | identical protein binding | |
Molecular Function | protein kinase C binding | |
Molecular Function | thrombospondin receptor activity | |
Biological Process | negative regulation of T cell proliferation | |
Biological Process | positive regulation of exosomal secretion | |
Biological Process | positive regulation of extracellular exosome assembly | |
Biological Process | positive regulation of focal adhesion assembly | |
Biological Process | positive regulation of stress fiber assembly | |
Biological Process | ureteric bud development |
Names & Taxonomy
Protein names
- Recommended nameSyndecan
Gene names
Organism names
- Organism
- Strain
- Taxonomic lineageEukaryota > Metazoa > Chordata > Craniata > Vertebrata > Euteleostomi > Mammalia > Eutheria > Euarchontoglires > Glires > Rodentia > Myomorpha > Muroidea > Muridae > Murinae > Mus > Mus
Accessions
- Primary accessionQ3U5S6
Organism-specific databases
Subcellular Location
UniProt Annotation
GO Annotation
Membrane ; Single-pass type I membrane protein
Features
Showing features for transmembrane.
Type | ID | Position(s) | Description | |||
---|---|---|---|---|---|---|
Transmembrane | 146-170 | Helical | ||||
Sequence: VLAALIVGGVVGILFAVFLILLLVY |
Keywords
- Cellular component
PTM/Processing
Features
Showing features for signal, chain.
Type | ID | Position(s) | Description | |||
---|---|---|---|---|---|---|
Signal | 1-23 | |||||
Sequence: MAPACLLAPLLLLLLGGFPLVPG | ||||||
Chain | PRO_5014309195 | 24-198 | Syndecan | |||
Sequence: ESIRETEVIDPQDLLEGRYFSGALPDDEDAGGSDDFELSGSGDLDDTEEPRPFPEVIEPLVPLDNHIPENAQPGIRVPSEPKELEENEVIPKRAPSDVGDDMSNKVSMSSTAQGSNIFERTEVLAALIVGGVVGILFAVFLILLLVYRMKKKDEGSYDLGKKPIYKKAPTNEFYA |
Keywords
- PTM
Proteomic databases
Expression
Gene expression databases
Structure
Family & Domains
Features
Showing features for region, compositional bias, domain.
Type | ID | Position(s) | Description | |||
---|---|---|---|---|---|---|
Region | 42-76 | Disordered | ||||
Sequence: YFSGALPDDEDAGGSDDFELSGSGDLDDTEEPRPF | ||||||
Compositional bias | 51-66 | Acidic residues | ||||
Sequence: EDAGGSDDFELSGSGD | ||||||
Region | 94-130 | Disordered | ||||
Sequence: AQPGIRVPSEPKELEENEVIPKRAPSDVGDDMSNKVS | ||||||
Compositional bias | 102-122 | Basic and acidic residues | ||||
Sequence: SEPKELEENEVIPKRAPSDVG | ||||||
Domain | 169-187 | Neurexin/syndecan/glycophorin C | ||||
Sequence: VYRMKKKDEGSYDLGKKPI |
Sequence similarities
Belongs to the syndecan proteoglycan family.
Keywords
- Domain
Phylogenomic databases
Family and domain databases
Sequence
- Sequence statusComplete
- Length198
- Mass (Da)21,482
- Last updated2005-10-11 v1
- Checksum4246963EC6A25915
Features
Showing features for compositional bias.
Type | ID | Position(s) | Description | |||
---|---|---|---|---|---|---|
Compositional bias | 51-66 | Acidic residues | ||||
Sequence: EDAGGSDDFELSGSGD | ||||||
Compositional bias | 102-122 | Basic and acidic residues | ||||
Sequence: SEPKELEENEVIPKRAPSDVG |
Sequence databases
Nucleotide Sequence | Protein Sequence | Molecule Type | Status | |
---|---|---|---|---|
AK134326 EMBL· GenBank· DDBJ | BAE22099.1 EMBL· GenBank· DDBJ | mRNA | ||
AK153445 EMBL· GenBank· DDBJ | BAE32000.1 EMBL· GenBank· DDBJ | mRNA | ||
AK159215 EMBL· GenBank· DDBJ | BAE34904.1 EMBL· GenBank· DDBJ | mRNA | ||
AK164952 EMBL· GenBank· DDBJ | BAE37978.1 EMBL· GenBank· DDBJ | mRNA |